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hypothetical_protein_BNJ_00378
Euk-VirKaumoebavirus_Viruses.
hypothetical_protein_BNJ_00378__YP_009352778__Kaumoebavirus_Viruses.__X
Identity
- Accession:
- YP_009352778 ↗
- Protein ID:
- hypothetical_protein_BNJ_00378
- Kingdom:
- euk
Quality
71.0
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 3-96
D2
high
residues 98-164
Domain cluster:
rep: DNA-directed_RNA_polymerase_II_subunit_RPB5__YP_008052525__Phaeocystis_globosa_virus__251749__D146-209
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF01191.25 best | RNA_pol_Rpb5_C | 47.2 | 2.00e-12 | 98.5% | 82.2% |
CATH (20)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1dzfA02 | 3.90.940.20 | Alpha Beta › Alpha-Beta Complex › Eukaryotic RPB6 RNA polymerase subunit › RPB5-like RNA polymerase subunit | 0.83 | 77.0 | 7.45e-01 | 100.0% | 95.9% |
| 1mbyA00 | 2.40.50.930 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › | 0.71 | 34.0 | 3.33e-01 | 98.5% | 40.0% |
| 2v8qA01 | 3.30.310.80 | Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › Kinase associated domain 1, KA1 | 0.71 | 37.0 | 3.37e-01 | 100.0% | 38.2% |
| 2y1sA00 | 2.30.60.10 | Mainly Beta › Roll › HIV-inactivating Protein, Cyanovirin-n › Cyanovirin-N | 0.63 | 34.0 | 2.93e-01 | 100.0% | 31.5% |
| 1lomA00 | 2.30.60.10 | Mainly Beta › Roll › HIV-inactivating Protein, Cyanovirin-n › Cyanovirin-N | 0.63 | 33.0 | 2.87e-01 | 100.0% | 31.7% |
| 2il5A00 | 3.30.530.20 | Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain | 0.63 | 38.0 | 2.84e-01 | 100.0% | 25.3% |
| 3ci0J02 | 2.10.70.20 | Mainly Beta › Ribbon › Complement Module; domain 1 › gspk-gspi-gspj complex like domains | 0.62 | 40.0 | 4.52e-01 | 98.5% | 90.0% |
| 3q45A01 | 3.30.390.10 | Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain | 0.58 | 39.0 | 3.12e-01 | 98.5% | 37.3% |
| 1wznA02 | 2.20.25.110 | Mainly Beta › Single Sheet › N-terminal domain of TfIIb › S-adenosyl-L-methionine-dependent methyltransferases | 0.57 | 38.0 | 4.11e-01 | 100.0% | 80.4% |
| 1ss4A00 | 3.10.180.10 | Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1 | 0.55 | 40.0 | 3.15e-01 | 100.0% | 35.6% |
| 6e5bN00 | 3.60.20.10 | Alpha Beta › 4-Layer Sandwich › Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 › Aminohydrolase, N-terminal nucleophile (Ntn) domain | 0.55 | 49.0 | 3.50e-01 | 100.0% | 94.5% |
| 4it4E01 | 2.40.30.320 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › | 0.55 | 48.0 | 4.08e-01 | 100.0% | 87.7% |
| 1ryp200 | 3.60.20.10 | Alpha Beta › 4-Layer Sandwich › Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 › Aminohydrolase, N-terminal nucleophile (Ntn) domain | 0.54 | 49.0 | 3.33e-01 | 100.0% | 86.3% |
| 6muwH00 | 3.60.20.10 | Alpha Beta › 4-Layer Sandwich › Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 › Aminohydrolase, N-terminal nucleophile (Ntn) domain | 0.54 | 48.0 | 3.42e-01 | 100.0% | 94.9% |
| 3bm1A00 | 3.40.109.10 | Alpha Beta › 3-Layer(aba) Sandwich › NADH Oxidase › NADH Oxidase | 0.53 | 46.0 | 3.45e-01 | 100.0% | 71.2% |
| 1rypC00 | 3.60.20.10 | Alpha Beta › 4-Layer Sandwich › Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 › Aminohydrolase, N-terminal nucleophile (Ntn) domain | 0.52 | 45.0 | 3.12e-01 | 100.0% | 82.0% |
| 1rypA00 | 3.60.20.10 | Alpha Beta › 4-Layer Sandwich › Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 › Aminohydrolase, N-terminal nucleophile (Ntn) domain | 0.52 | 45.0 | 3.09e-01 | 100.0% | 82.7% |
| 5euvA03 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.52 | 39.0 | 3.53e-01 | 98.5% | 58.5% |
| 2gx5C00 | 3.30.450.40 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › GAF domain | 0.52 | 35.0 | 2.65e-01 | 94.0% | 29.2% |
| 1wtjA02 | 3.30.1370.60 | Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › Malate/L-lactate/L-sulpholactate dehydrogenase, NADPH binding domain | 0.51 | 40.0 | 2.97e-01 | 88.1% | 84.3% |
ECOD (27)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3824571 | 840.1.1.1 ↗ | a+b two layers › RPB5-like RNA polymerase subunit › RPB5-like RNA polymerase subunit › RPB5-like RNA polymerase subunit › RNA_pol_Rpb5_C | 0.90 | 84.0 | 8.05e-01 | 100.0% | 93.3% |
| 4838977 | 840.1.1.1 ↗ | a+b two layers › RPB5-like RNA polymerase subunit › RPB5-like RNA polymerase subunit › RPB5-like RNA polymerase subunit › RNA_pol_Rpb5_C | 0.88 | 82.0 | 7.81e-01 | 100.0% | 92.1% |
| 3607644 | 840.1.1.1 ↗ | a+b two layers › RPB5-like RNA polymerase subunit › RPB5-like RNA polymerase subunit › RPB5-like RNA polymerase subunit › RNA_pol_Rpb5_C | 0.87 | 81.0 | 7.80e-01 | 100.0% | 91.9% |
| 3596039 | 840.1.1.0 ↗ | a+b two layers › RPB5-like RNA polymerase subunit › RPB5-like RNA polymerase subunit › RPB5-like RNA polymerase subunit | 0.87 | 79.0 | 7.83e-01 | 98.5% | 95.7% |
| 4861748 | 840.1.1.1 ↗ | a+b two layers › RPB5-like RNA polymerase subunit › RPB5-like RNA polymerase subunit › RPB5-like RNA polymerase subunit › RNA_pol_Rpb5_C | 0.87 | 78.0 | 7.71e-01 | 100.0% | 91.5% |
| 4600910 | 840.1.1.0 ↗ | a+b two layers › RPB5-like RNA polymerase subunit › RPB5-like RNA polymerase subunit › RPB5-like RNA polymerase subunit | 0.87 | 80.0 | 7.92e-01 | 100.0% | 95.7% |
| 4253107 | 840.1.1.1 ↗ | a+b two layers › RPB5-like RNA polymerase subunit › RPB5-like RNA polymerase subunit › RPB5-like RNA polymerase subunit › RNA_pol_Rpb5_C | 0.86 | 79.0 | 7.72e-01 | 100.0% | 93.2% |
| 3033324 | 840.1.1.1 ↗ | a+b two layers › RPB5-like RNA polymerase subunit › RPB5-like RNA polymerase subunit › RPB5-like RNA polymerase subunit › RNA_pol_Rpb5_C | 0.83 | 74.0 | 7.25e-01 | 100.0% | 91.7% |
| 3996443 | 2007.2.3.1 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Flavoproteins/Phosphotyrosine protein phosphatases-like › (Phosphotyrosine protein) phosphatases II › Y_phosphatase | 0.69 | 41.0 | 2.71e-01 | 100.0% | 15.8% |
| 3799203 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.61 | 38.0 | 2.79e-01 | 100.0% | 23.3% |
| 3576300 | 11.1.1.53 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › DOMON | 0.61 | 38.0 | 2.76e-01 | 100.0% | 22.7% |
| 5074621 | 1.1.2.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › double psi | 0.60 | 53.0 | 4.33e-01 | 97.0% | 65.8% |
| 4932944 | 1.1.2.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › double psi | 0.58 | 54.0 | 4.30e-01 | 100.0% | 72.0% |
| 3244285 | 822.1.1.1 ↗ | a+b two layers › GYF/BRK domain-like › GYF domain › GYF domain › GYF | 0.58 | 45.0 | 4.39e-01 | 98.5% | 74.7% |
| 4021561 | 377.1.2.1 ↗ | few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › PARP-type zinc finger › zf-PARP | 0.57 | 42.0 | 3.66e-01 | 98.5% | 50.5% |
| 3583716 | 11.1.1.179 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Ig_3 | 0.57 | 43.0 | 3.83e-01 | 98.5% | 56.8% |
| 5078728 | 1.1.2.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › double psi | 0.57 | 51.0 | 4.05e-01 | 98.5% | 66.9% |
| 4973372 | 1.1.2.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › double psi | 0.57 | 51.0 | 4.14e-01 | 100.0% | 70.4% |
| 5003023 | 1.1.2.16 ↗ | beta barrels › cradle loop barrel › RIFT-related › double psi › MacB_PCD | 0.57 | 52.0 | 4.22e-01 | 100.0% | 69.2% |
| 5026843 | 1.1.2.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › double psi | 0.56 | 51.0 | 3.99e-01 | 100.0% | 56.3% |
| 4982111 | 11.1.4.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Prealbumin-like | 0.55 | 49.0 | 4.22e-01 | 100.0% | 76.2% |
| 3275021 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.54 | 44.0 | 4.04e-01 | 100.0% | 68.2% |
| 3881059 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.54 | 44.0 | 4.30e-01 | 98.5% | 80.0% |
| 3708226 | 210.1.1.1 ↗ | a+b four layers › Ntn/PP2C › Ntn › Proteasome subunits › Proteasome | 0.53 | 47.0 | 3.22e-01 | 100.0% | 78.8% |
| 3479687 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.52 | 46.0 | 3.53e-01 | 98.5% | 62.6% |
| 4135206 | 11.1.1.33 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Arch_flagellin | 0.51 | 46.0 | 3.41e-01 | 98.5% | 52.5% |
| 3473447 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.50 | 42.0 | 3.61e-01 | 100.0% | 77.5% |