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hypothetical_protein_BZK12_gp019
Euk-VirLymphocystis_disease_virus_Sa
hypothetical_protein_BZK12_gp019__YP_009342087__Lymphocystis_disease_virus_Sa__1898060
Identity
- Accession:
- YP_009342087 ↗
- Protein ID:
- hypothetical_protein_BZK12_gp019
- Kingdom:
- euk
Quality
72.6
mean pLDDT
Taxonomy
Bamfordvirae›
Nucleocytoviricota›
Megaviricetes›
Pimascovirales›
Iridoviridae›
Lymphocystivirus›
Lymphocystis_disease_virus_Sa
TaxID: 1898060
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 1-49
Domain cluster:
representative
CATH (11)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4fjqA01 | 1.10.600.10 | Mainly Alpha › Orthogonal Bundle › Farnesyl Diphosphate Synthase › Farnesyl Diphosphate Synthase | 0.64 | 57.0 | 3.39e-01 | 100.0% | 73.5% |
| 5anpA00 | 3.10.310.50 | Alpha Beta › Roll › Diaminopimelate Epimerase; Chain A, domain 1 › | 0.64 | 47.0 | 3.46e-01 | 83.7% | 27.6% |
| 1to9A00 | 1.20.910.10 | Mainly Alpha › Up-down Bundle › Heme Oxygenase; Chain A › Heme oxygenase-like | 0.64 | 45.0 | 2.84e-01 | 73.5% | 90.2% |
| 6khjH01 | 1.10.645.10 | Mainly Alpha › Orthogonal Bundle › Cytochrome-c3 Hydrogenase; chain B › Cytochrome-c3 Hydrogenase, chain B | 0.62 | 54.0 | 3.24e-01 | 100.0% | 67.3% |
| 3eslA02 | 1.25.40.930 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › | 0.61 | 46.0 | 3.64e-01 | 87.8% | 37.8% |
| 4jgiA01 | 1.10.1240.10 | Mainly Alpha › Orthogonal Bundle › Methyltransferase, Methionine Synthase (B12-binding Domains); Chain A, domain 1 › Methionine synthase domain | 0.61 | 44.0 | 3.77e-01 | 77.6% | 67.5% |
| 3nbiA01 | 1.10.8.1020 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › RecQ-mediated genome instability protein 1, N-terminal domain | 0.61 | 48.0 | 4.65e-01 | 98.0% | 82.8% |
| 3fy4C03 | 1.10.579.10 | Mainly Alpha › Orthogonal Bundle › DNA Cyclobutane Dipyrimidine Photolyase, subunit A; domain 3 › DNA Cyclobutane Dipyrimidine Photolyase, subunit A, domain 3 | 0.60 | 41.0 | 2.72e-01 | 81.6% | 17.0% |
| 3c8zA02 | 1.20.120.640 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases | 0.57 | 46.0 | 3.91e-01 | 91.8% | 63.9% |
| 3fvvA02 | 1.20.1440.100 | Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › SG protein - dephosphorylation function | 0.53 | 41.0 | 3.76e-01 | 100.0% | 80.0% |
| 1d2mA03 | 6.10.140.240 | Special › Helix non-globular › Helix Hairpins › | 0.50 | 44.0 | 4.00e-01 | 100.0% | 90.9% |
ECOD (9)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3243984 | 524.1.1.0 ↗ | alpha arrays › Ypt/Rab-GAP domain of gyp1p-like › Ypt/Rab-GAP domain of gyp1p › Ypt/Rab-GAP domain of gyp1p | 0.78 | 68.0 | 4.97e-01 | 98.0% | 37.6% |
| 3995291 | 103.1.1.0 ↗ | alpha arrays › RuvA-C › RuvA-C, UBA, CRAL/TRIO-N, HBS1 › UBA-like domain | 0.74 | 60.0 | 5.47e-01 | 89.8% | 67.7% |
| 2472941 | 1074.1.1.1 ↗ | alpha arrays › Alpha helical domain of ribonucleotide reductases › Alpha helical domain of ribonucleotide reductases › Alpha helical domain of ribonucleotide reductases › Ribonuc_red_lgN | 0.70 | 61.0 | 5.30e-01 | 98.0% | 68.0% |
| 3545742 | 5.1.4.1 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 | 0.66 | 55.0 | 3.20e-01 | 100.0% | 11.9% |
| 4517523 | 375.1.1.26 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › Rpr2 | 0.65 | 48.0 | 3.78e-01 | 77.6% | 39.0% |
| 3197897 | 616.1.1.0 ↗ | alpha arrays › S15/NS1 RNA-binding domain › S15/NS1 RNA-binding domain › S15/NS1 RNA-binding domain | 0.63 | 49.0 | 4.64e-01 | 87.8% | 85.0% |
| 5048919 | 103.1.1.0 ↗ | alpha arrays › RuvA-C › RuvA-C, UBA, CRAL/TRIO-N, HBS1 › UBA-like domain | 0.61 | 48.0 | 4.64e-01 | 98.0% | 83.3% |
| 4159554 | 101.1.2.73 ↗ | alpha arrays › HTH › HTH › winged helix domain › RNA_pol_Rpc82 | 0.57 | 47.0 | 3.50e-01 | 98.0% | 95.7% |
| 3853866 | 558.1.1.14 ↗ | alpha duplicates or obligate multimers › Lis-homology dimerization domain › Lis-homology dimerization domain › Lis-homology dimerization domain › HRI2_3H | 0.53 | 43.0 | 3.98e-01 | 100.0% | 90.0% |
D2
high
residues 135-197
D3
medium
residues 56-121