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hypothetical_protein_BZK12_gp056

Euk-Vir

Lymphocystis_disease_virus_Sa

hypothetical_protein_BZK12_gp056__YP_009342124__Lymphocystis_disease_virus_Sa__1898060

Identity

Accession:
YP_009342124 ↗
Protein ID:
hypothetical_protein_BZK12_gp056
Kingdom:
euk

Quality

51.4 mean pLDDT

Taxonomy

Bamfordvirae› Nucleocytoviricota› Megaviricetes› Pimascovirales› Iridoviridae› Lymphocystivirus› Lymphocystis_disease_virus_Sa

TaxID: 1898060

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 26-107
PDB
D2 high residues 186-286
PDB
Domain cluster: representative
CATH (17)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
6az1E02 2.40.50.740 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Ribosomal protein S4, central domain 0.78 27.0 3.88e-01 75.2% 64.7%
2x5cA01 3.30.70.3590 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.66 39.0 4.10e-01 100.0% 64.8%
4hcsA00 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.62 30.0 3.67e-01 80.2% 70.1%
3d6wB02 2.20.25.10 Mainly Beta › Single Sheet › N-terminal domain of TfIIb › 0.62 26.0 3.79e-01 75.2% 97.4%
2ra9A02 2.30.270.10 Mainly Beta › Roll › duf1285 protein fold › duf1285 protein 0.60 33.0 3.78e-01 90.1% 74.0%
1nr4C00 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.59 29.0 3.48e-01 80.2% 69.7%
1eqtA00 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.59 29.0 3.50e-01 80.2% 70.1%
1zxtA01 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.57 28.0 3.53e-01 80.2% 77.0%
1icwB00 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.57 28.0 3.45e-01 83.2% 72.7%
2ra2B00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.57 29.0 3.60e-01 90.1% 82.8%
5cbeE00 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.56 29.0 3.51e-01 84.2% 78.1%
4erdA00 3.30.70.330 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain 0.54 36.0 3.60e-01 100.0% 63.9%
1jegA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.52 30.0 3.70e-01 97.0% 96.7%
2vknA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.51 30.0 3.54e-01 92.1% 86.4%
1f9qD00 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.51 27.0 3.25e-01 83.2% 77.3%
3vn5A01 3.30.310.10 Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › TATA-Binding Protein 0.51 32.0 3.74e-01 99.0% 92.8%
1rypD00 3.60.20.10 Alpha Beta › 4-Layer Sandwich › Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 › Aminohydrolase, N-terminal nucleophile (Ntn) domain 0.50 44.0 3.35e-01 97.0% 85.9%
ECOD (23)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4943272 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.65 27.0 3.55e-01 77.2% 66.7%
3990001 4.8.1.5 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like › LytTR 0.61 32.0 4.21e-01 84.2% 98.1%
4032637 4.8.1.5 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like › LytTR 0.60 32.0 4.16e-01 87.1% 96.4%
3891033 1170.1.1.1 ↗ beta barrels › IL8-related › IL8-related › IL8 › IL8 0.60 30.0 3.49e-01 83.2% 65.8%
3323055 822.1.1.0 ↗ a+b two layers › GYF/BRK domain-like › GYF domain › GYF domain 0.57 34.0 4.07e-01 76.2% 92.3%
4172704 4.8.1.5 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like › LytTR 0.57 31.0 3.98e-01 86.1% 96.4%
2504393 3899.1.1.2 ↗ beta complex topology › Baseplate structural protein gp8 › Baseplate structural protein gp8 › Baseplate structural protein gp8 › BW3TFN 0.54 41.0 3.46e-01 81.2% 88.3%
1700100 1170.1.1.1 ↗ beta barrels › IL8-related › IL8-related › IL8 › IL8 0.54 29.0 3.55e-01 79.2% 83.6%
3694693 4.8.1.2 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like › Chromo_shadow 0.54 28.0 3.35e-01 82.2% 75.4%
4014812 4.8.1.2 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like › Chromo_shadow 0.54 27.0 3.36e-01 84.2% 78.3%
3296813 898.1.1.1 ↗ a+b two layers › a+b domain in Ribosomal protein L1 › a+b domain in Ribosomal protein L1 › a+b domain in Ribosomal protein L1 › Ribosomal_L1 0.53 43.0 3.89e-01 88.1% 95.7%
3571636 206.1.3.35 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › ATP-grasp › DUF5565 0.53 40.0 3.05e-01 78.2% 72.3%
3422531 7.1.1.7 ↗ beta barrels › PDZ domain › PDZ domain › PDZ domain › PDZ_3 0.53 35.0 3.91e-01 86.1% 92.0%
4650117 502.1.1.1 ↗ a+b two layers › Anti-LPS factor/recA domain › Anti-LPS factor/recA domain › Anti-LPS factor/recA domain › RecA_C 0.53 31.0 3.43e-01 100.0% 72.5%
3911547 1170.1.1.1 ↗ beta barrels › IL8-related › IL8-related › IL8 › IL8 0.52 28.0 3.05e-01 83.2% 60.0%
3416069 331.1.1.0 ↗ a+b two layers › TBP-like › TATA-box binding protein-like › TATA-box binding protein-like 0.52 31.0 3.61e-01 100.0% 85.7%
3772995 304.166.1.9 ↗ a+b two layers › Alpha-beta plaits › Nup54 ferredoxin-like domain › Nup54 ferredoxin-like domain › PF29949 0.52 34.0 3.19e-01 99.0% 53.6%
4172991 4263.2.1.0 ↗ a+b two layers › TTHA1528-like › FtsH Periplasmic Domain › FtsH Periplasmic Domain 0.51 27.0 3.11e-01 86.1% 70.0%
3194005 4.1.1.92 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_9 0.51 31.0 3.53e-01 92.1% 82.7%
3539447 4070.1.1.0 ↗ alpha arrays › FtsH protease domain-like › FtsH protease domain-like › FtsH protease domain-like 0.51 37.0 3.86e-01 95.0% 85.3%
3969863 304.24.1.0 ↗ a+b two layers › Alpha-beta plaits › EF-G C-terminal domain-like › EF-G C-terminal domain-like 0.50 33.0 3.84e-01 75.2% 100.0%
4086511 7.1.1.0 ↗ beta barrels › PDZ domain › PDZ domain › PDZ domain 0.50 37.0 3.68e-01 94.1% 73.6%
3630115 2485.1.1.35 ↗ a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like › MRP_L53 0.50 33.0 3.44e-01 84.2% 72.6%
D3 high residues 297-413
PDB
Domain cluster: representative
CATH (23)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4cqiA00 1.20.58.90 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.62 34.0 3.55e-01 99.1% 57.0%
2o8hA00 1.10.1300.10 Mainly Alpha › Orthogonal Bundle › Catalytic domain of cyclic nucleotide phosphodiesterase 4b2b › 3'5'-cyclic nucleotide phosphodiesterase, catalytic domain 0.62 51.0 3.77e-01 88.9% 88.6%
2v5cA03 1.20.58.460 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Hyaluronidase post-catalytic domain-like 0.62 32.0 3.13e-01 98.3% 43.8%
1lvfB00 1.20.58.90 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.61 32.0 3.44e-01 99.1% 57.7%
3l09A01 1.20.58.1460 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.59 30.0 3.23e-01 100.0% 56.1%
3purA03 1.20.58.1360 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.58 31.0 3.22e-01 95.7% 54.5%
2a5yB03 1.10.8.490 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Ced-4 linker helical domain-like 0.58 37.0 4.31e-01 91.5% 94.9%
1kxpD02 1.10.246.10 Mainly Alpha › Orthogonal Bundle › Serum Albumin; Chain A, Domain 1 › 0.58 31.0 3.51e-01 77.8% 67.0%
1aorA02 1.10.569.10 Mainly Alpha › Orthogonal Bundle › Aldehyde Ferredoxin Oxidoreductase Protein, subunit A; domain 2 › Aldehyde Ferredoxin Oxidoreductase Protein, subunit A, domain 2 0.56 50.0 4.30e-01 98.3% 62.9%
1kmiZ02 1.10.287.500 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin 0.55 34.0 3.28e-01 100.0% 53.7%
3lqhA02 1.20.920.10 Mainly Alpha › Up-down Bundle › Histone Acetyltransferase; Chain A › Bromodomain-like 0.55 41.0 4.27e-01 97.4% 87.7%
2i53A01 1.10.472.10 Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like 0.54 40.0 3.77e-01 77.8% 72.7%
1f5qB01 1.10.472.10 Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like 0.54 35.0 3.60e-01 94.0% 69.7%
1y8aA02 1.10.3870.10 Mainly Alpha › Orthogonal Bundle › AF1437-like domain fold › AF1437-like domain superfamily 0.53 46.0 4.66e-01 96.6% 100.0%
5z7cA01 1.10.3210.10 Mainly Alpha › Orthogonal Bundle › Hypothetical protein af1432 › Hypothetical protein af1432 0.53 38.0 3.39e-01 75.2% 98.9%
1td6A03 1.10.472.40 Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Hypothetical protein mg237 homolog; domain 3 0.53 39.0 4.36e-01 85.5% 98.9%
3fm5A00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.52 34.0 3.36e-01 86.3% 59.2%
2bl2A00 1.20.120.610 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › lithium bound rotor ring of v- atpase 0.52 36.0 3.35e-01 71.8% 85.3%
1qdbA02 1.20.140.10 Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › Butyryl-CoA Dehydrogenase, subunit A, domain 3 0.52 37.0 3.50e-01 72.6% 76.2%
3ddhA02 1.10.150.240 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 0.52 35.0 4.06e-01 91.5% 100.0%
3axjB01 1.20.58.190 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Translin; domain 1 0.51 28.0 2.61e-01 100.0% 36.8%
2f5jB00 1.10.274.30 Mainly Alpha › Orthogonal Bundle › Enzyme I; Chain A, domain 2 › MRG domain 0.51 39.0 3.55e-01 81.2% 82.4%
5wp3B00 1.10.132.20 Mainly Alpha › Orthogonal Bundle › Topoisomerase I; Chain A, domain 4 › Ribosome-recycling factor 0.50 34.0 3.62e-01 96.6% 79.4%
ECOD (4)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3938087 103.4.1.0 ↗ alpha arrays › RuvA-C › Elongation factor TFIIS domain 2/ Kix domain of creb binding protein › Elongation factor TFIIS domain 2/ Kix domain of creb binding protein 0.68 51.0 5.17e-01 77.8% 91.3%
3473769 4177.1.1.2 ↗ alpha duplicates or obligate multimers › BAR/IMD domain-like › BAR/IMD domain-like › BAR/IMD domain-like › BAR 0.62 42.0 3.29e-01 98.3% 31.4%
3933045 603.1.1.0 ↗ alpha bundles › STAT-like › t-snare proteins › t-snare proteins 0.60 33.0 2.83e-01 99.1% 32.8%
3923415 5050.1.1.9 ↗ alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › MFS_1 0.52 44.0 2.94e-01 94.0% 80.0%
D4 high residues 444-540
PDB