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hypothetical_protein_CBPV_s2gp2

Euk-Vir

Chronic_bee_paralysis_virus

hypothetical_protein_CBPV_s2gp2__YP_001911140__Chronic_bee_paralysis_virus__180822

Identity

Accession:: YP_001911140 ↗
Protein ID:: hypothetical_protein_CBPV_s2gp2
Kingdom:: euk

Quality

45.5 mean pLDDT

Taxonomy

Chronic_bee_paralysis_virus

TaxID: 180822

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 238-315

PDB

Domain cluster: representative

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF16506.11 best	DiSB-ORF2_chro	52.8	8.60e-14	55.1%	18.1%

CATH (17)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
4bfeA02	2.60.40.10	Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins	0.66	39.0	3.89e-01	91.0%	55.6%
3bp6B02	2.60.40.10	Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins	0.62	40.0	3.88e-01	92.3%	58.0%
4i0kA02	2.60.40.10	Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins	0.60	40.0	3.82e-01	92.3%	57.9%
4f80A02	2.60.40.10	Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins	0.58	40.0	3.83e-01	92.3%	60.2%
3a27A00	3.40.50.150	Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39	0.56	51.0	3.67e-01	100.0%	82.2%
7k0xA03	2.60.40.10	Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins	0.56	36.0	3.64e-01	89.7%	65.4%
2fbjH02	2.60.40.10	Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins	0.55	39.0	3.99e-01	92.3%	79.5%
4frwA02	2.60.40.10	Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins	0.55	37.0	3.51e-01	92.3%	56.2%
4qdjA00	3.40.50.150	Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39	0.54	42.0	3.20e-01	87.2%	78.4%
4ofyD02	2.60.40.10	Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins	0.54	40.0	3.65e-01	91.0%	58.9%
4tllC01	3.40.190.10	Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II	0.53	34.0	2.89e-01	84.6%	38.8%
5f1cA02	2.60.490.10	Mainly Beta › Sandwich › atp-gated p2x4 ion channel fold › atp-gated p2x4 ion channel domain	0.52	44.0	3.12e-01	100.0%	93.3%
2khdA00	3.30.70.860	Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits ›	0.52	40.0	3.62e-01	85.9%	60.2%
1omsA00	3.30.70.1050	Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Trigger factor ribosome-binding domain	0.51	41.0	3.66e-01	88.5%	91.2%
4am6A02	3.90.640.10	Alpha Beta › Alpha-Beta Complex › Actin; Chain A, domain 4 › ATPase, substrate binding domain, subdomain 4	0.51	35.0	2.93e-01	74.4%	94.2%
4qjvB00	3.30.1360.10	Alpha Beta › 2-Layer Sandwich › Gyrase A; domain 2 › RNA polymerase, RBP11-like subunit	0.50	34.0	3.27e-01	89.7%	58.5%
2petA02	2.60.40.10	Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins	0.50	39.0	3.50e-01	91.0%	58.6%

ECOD (9)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3908664	11.1.1.0 ↗	beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like	0.66	39.0	4.49e-01	91.0%	85.2%
5082775	304.126.1.0 ↗	a+b two layers › Alpha-beta plaits › ferredoxin-like domain in vacuolar ATP synthase subunit C › ferredoxin-like domain in vacuolar ATP synthase subunit C	0.54	33.0	3.52e-01	96.2%	68.6%
3620547	304.9.1.1 ↗	a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD › RRM_1	0.54	39.0	3.57e-01	87.2%	56.4%
5022722	304.156.1.0 ↗	a+b two layers › Alpha-beta plaits › DNA translocase FtsK N-terminal domain › DNA translocase FtsK N-terminal domain	0.53	32.0	3.32e-01	89.7%	62.7%
5017209	882.1.1.4 ↗	a+b two layers › Ribosomal protein L5 › Ribosomal protein L5 › Ribosomal protein L5 › RNA_binding	0.53	37.0	3.06e-01	91.0%	38.7%
3604263	882.1.1.4 ↗	a+b two layers › Ribosomal protein L5 › Ribosomal protein L5 › Ribosomal protein L5 › RNA_binding	0.52	37.0	3.03e-01	91.0%	38.9%
3274732	11.1.1.0 ↗	beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like	0.52	33.0	3.18e-01	89.7%	52.6%
3267786	864.1.1.0 ↗	a+b two layers › DLC › DLC › DLC	0.52	34.0	3.44e-01	88.5%	66.3%
4053989	304.9.1.71 ↗	a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD › SNU71_RBD	0.50	37.0	3.16e-01	80.8%	57.9%

D2 high residues 512-580

PDB

Domain cluster: representative

CATH (2)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3x0uB01	1.20.190.10	Mainly Alpha › Up-down Bundle › Delta-Endotoxin; domain 1 › Pesticidal crystal protein, N-terminal domain	0.65	52.0	3.60e-01	88.4%	49.0%
2l6hA00	1.20.120.330	Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Nucleotidyltransferases domain 2	0.64	51.0	3.96e-01	88.4%	77.9%

ECOD (3)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3782312	4177.1.1.1 ↗	alpha duplicates or obligate multimers › BAR/IMD domain-like › BAR/IMD domain-like › BAR/IMD domain-like › FCH	0.76	54.0	3.45e-01	73.9%	77.3%
1734350	4177.1.1.1 ↗	alpha duplicates or obligate multimers › BAR/IMD domain-like › BAR/IMD domain-like › BAR/IMD domain-like › FCH	0.70	50.0	3.21e-01	73.9%	76.5%
3992618	150.1.1.0 ↗	alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › Ferritin/Heme oxygenase › Ferritin	0.57	52.0	3.61e-01	100.0%	81.4%