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hypothetical_protein_D1R72_gp008

Euk-Vir

Heterosigma_akashiwo_virus_01

hypothetical_protein_D1R72_gp008__YP_009507405__Heterosigma_akashiwo_virus_01__97195

Identity

Accession:
YP_009507405 ↗
Protein ID:
hypothetical_protein_D1R72_gp008
Kingdom:
euk

Quality

60.8 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 2-83
PDB
Domain cluster: representative
CATH (44)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1t72A01 1.20.58.220 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphate transport system protein phou homolog 2; domain 2 0.84 69.0 6.10e-01 87.8% 82.1%
2ptfB02 1.20.58.290 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Hypothetical membrane protein ta0354_69_121. 0.81 55.0 6.31e-01 80.5% 100.0%
1aj3A00 1.20.58.60 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.80 64.0 6.03e-01 85.4% 96.9%
4d8mA01 1.20.190.10 Mainly Alpha › Up-down Bundle › Delta-Endotoxin; domain 1 › Pesticidal crystal protein, N-terminal domain 0.78 71.0 5.19e-01 100.0% 76.4%
1g8xA06 1.20.58.60 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.78 63.0 4.17e-01 87.8% 31.7%
3etvA02 1.20.58.2230 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Retrograde transport protein Dsl1, N-terminal domain 0.77 67.0 4.81e-01 96.3% 40.3%
5nl6B01 1.20.58.60 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.76 61.0 5.39e-01 87.8% 87.6%
1yozA00 1.10.3200.10 Mainly Alpha › Orthogonal Bundle › Hypothetical protein af0941 › AF0941-like 0.75 59.0 5.30e-01 84.1% 77.9%
1hciA03 1.20.58.60 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.75 60.0 5.31e-01 87.8% 89.2%
3axjB01 1.20.58.190 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Translin; domain 1 0.74 67.0 5.42e-01 100.0% 82.6%
3cqcB01 1.20.58.1380 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.73 54.0 5.22e-01 81.7% 70.0%
3lpzA01 1.25.40.10 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain 0.73 61.0 4.08e-01 90.2% 25.2%
2cazE00 1.20.1440.200 Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › Vps28 N-terminal domain 0.73 60.0 5.57e-01 87.8% 89.1%
1b48A02 1.20.1050.10 Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › 0.73 64.0 5.84e-01 98.8% 94.5%
2ra1A03 1.20.58.770 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.72 52.0 5.69e-01 82.9% 100.0%
3eslA01 1.20.58.2070 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.71 57.0 5.88e-01 86.6% 96.0%
4cb8A00 1.25.10.10 Mainly Alpha › Alpha Horseshoe › Leucine-rich Repeat Variant › Leucine-rich Repeat Variant 0.71 60.0 3.74e-01 96.3% 22.3%
1qsdA00 1.20.58.90 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.70 54.0 5.02e-01 82.9% 100.0%
2nwbA02 1.20.58.480 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.68 61.0 4.40e-01 100.0% 73.0%
1zu2A00 1.25.40.10 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain 0.68 52.0 4.23e-01 86.6% 43.0%
1f5xA00 1.20.900.10 Mainly Alpha › Up-down Bundle › Dbl Homology Domain; Chain A › Dbl homology (DH) domain 0.68 59.0 4.42e-01 98.8% 66.8%
4jvyB00 3.30.1370.10 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › K Homology domain, type 1 0.67 46.0 3.46e-01 70.7% 94.7%
4kb2A01 1.10.132.20 Mainly Alpha › Orthogonal Bundle › Topoisomerase I; Chain A, domain 4 › Ribosome-recycling factor 0.66 51.0 4.73e-01 86.6% 92.7%
4f03B02 1.20.1050.10 Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › 0.65 56.0 4.74e-01 100.0% 93.8%
3a98A02 1.20.1270.350 Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › Dedicator of cytokinesis N-terminal subdomain 0.64 44.0 4.37e-01 92.7% 67.8%
5gj7A01 1.10.540.10 Mainly Alpha › Orthogonal Bundle › Butyryl-Coa Dehydrogenase, subunit A; domain 1 › Acyl-CoA dehydrogenase/oxidase, N-terminal domain 0.64 54.0 4.71e-01 93.9% 76.0%
3k3oA02 1.20.58.1360 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.63 50.0 5.03e-01 87.8% 96.4%
1txuA01 1.10.246.120 Mainly Alpha › Orthogonal Bundle › Serum Albumin; Chain A, Domain 1 › 0.63 50.0 4.80e-01 86.6% 84.0%
4k08A00 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.62 47.0 3.96e-01 81.7% 89.6%
4g1tA01 1.25.40.10 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain 0.62 52.0 4.53e-01 91.5% 65.0%
3zdrA02 1.20.1090.10 Mainly Alpha › Up-down Bundle › Dehydroquinate synthase-like, alpha domain › Dehydroquinate synthase-like - alpha domain 0.62 49.0 3.68e-01 86.6% 91.4%
4dlqA02 1.25.40.610 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › 0.62 53.0 5.11e-01 95.1% 88.4%
3bjdA01 1.10.1240.20 Mainly Alpha › Orthogonal Bundle › Methyltransferase, Methionine Synthase (B12-binding Domains); Chain A, domain 1 › Lytic transglycosylase, superhelical linker domain 0.62 46.0 4.53e-01 80.5% 80.7%
4j8sA00 1.25.40.840 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › CCR4-NOT transcription complex subunit 1 TTP binding domain 0.58 48.0 3.87e-01 96.3% 45.0%
4rflA02 1.20.1090.10 Mainly Alpha › Up-down Bundle › Dehydroquinate synthase-like, alpha domain › Dehydroquinate synthase-like - alpha domain 0.57 50.0 3.79e-01 98.8% 72.4%
2kiwA01 1.10.150.130 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Tyrosine recombinase, N-terminal domain 0.57 38.0 3.83e-01 78.0% 66.3%
1jogA00 1.20.120.330 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Nucleotidyltransferases domain 2 0.57 51.0 4.33e-01 100.0% 90.4%
1hp8A00 1.10.287.1130 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › CytochromE C oxidase copper chaperone 0.57 41.0 4.40e-01 87.8% 94.1%
1e1dA02 1.20.1270.20 Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › 0.56 45.0 4.48e-01 86.6% 86.9%
5domA00 1.10.110.10 Mainly Alpha › Orthogonal Bundle › Hydrophobic Seed Protein › Plant lipid-transfer and hydrophobic proteins 0.55 42.0 4.11e-01 81.7% 86.7%
1jr8A00 1.20.120.310 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › ERV/ALR sulfhydryl oxidase domain 0.53 47.0 4.36e-01 100.0% 81.9%
5uh5D02 1.10.132.30 Mainly Alpha › Orthogonal Bundle › Topoisomerase I; Chain A, domain 4 › RNA polymerase Rpb1 funnel domain 0.53 46.0 3.93e-01 98.8% 71.7%
4v1xA02 3.20.20.140 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Metal-dependent hydrolases 0.51 42.0 2.86e-01 96.3% 29.5%
1oqcA00 1.20.120.310 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › ERV/ALR sulfhydryl oxidase domain 0.50 43.0 3.95e-01 98.8% 75.9%
ECOD (55)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4971843 603.1.1.0 alpha bundles › STAT-like › t-snare proteins › t-snare proteins 0.95 79.0 7.68e-01 86.6% 91.0%
3960319 4121.1.1.1 a+b three layers › CorA soluble domain-like › CorA soluble domain-like › CorA soluble domain-like › CorA 0.94 79.0 5.99e-01 87.8% 63.5%
3314530 604.3.1.0 alpha bundles › Spectrin repeat-like › BAG domain › BAG domain 0.93 78.0 7.23e-01 87.8% 82.0%
3560925 604.1.1.20 alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat › AKNA 0.92 76.0 6.79e-01 86.6% 90.0%
3884746 604.1.1.0 alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat 0.88 73.0 6.07e-01 87.8% 79.3%
5082279 192.29.1.0 alpha bundles › Long alpha-hairpin › bMERB domain (bivalent Mical/EHBP Rab binding) › bMERB domain (bivalent Mical/EHBP Rab binding) 0.84 69.0 6.04e-01 87.8% 69.2%
3920960 604.8.1.2 alpha bundles › Spectrin repeat-like › Smac/diablo › Smac/diablo › Mitofilin 0.84 69.0 5.86e-01 87.8% 80.8%
3434642 109.4.1.420 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR 0.83 72.0 5.35e-01 92.7% 40.5%
3228341 604.1.1.55 alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat › RasGAP_C 0.81 67.0 5.95e-01 89.0% 81.7%
3495915 604.1.1.0 alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat 0.80 65.0 4.51e-01 87.8% 39.6%
3488292 604.1.1.0 alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat 0.80 66.0 5.90e-01 87.8% 94.5%
3940580 604.6.1.14 alpha bundles › Spectrin repeat-like › GAT-like domain › GAT-like domain › RasGAP_C 0.79 65.0 5.76e-01 87.8% 81.7%
3536832 109.4.1.87 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Sec6 0.79 68.0 4.41e-01 93.9% 37.5%
3697260 603.1.1.0 alpha bundles › STAT-like › t-snare proteins › t-snare proteins 0.77 68.0 5.11e-01 100.0% 97.1%
3858904 3285.1.1.16 alpha duplicates or obligate multimers › Alix V domain › Alix V domain › Alix V domain › MBOAT 0.77 70.0 5.37e-01 100.0% 88.3%
4362098 7022.1.1.1 alpha bundles › central core domain of D-alanyl transfer protein › central core domain of D-alanyl transfer protein › central core domain of D-alanyl transfer protein › MBOAT 0.77 70.0 4.40e-01 100.0% 71.0%
3917324 601.4.1.0 alpha bundles › Four-helical up-and-down bundle › Histidine kinase associated sensor domains › Histidine kinase associated sensor domains 0.77 65.0 5.44e-01 92.7% 95.0%
3920401 109.4.1.1759 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › MBOAT 0.75 69.0 4.35e-01 100.0% 74.4%
3418144 7022.1.1.1 alpha bundles › central core domain of D-alanyl transfer protein › central core domain of D-alanyl transfer protein › central core domain of D-alanyl transfer protein › MBOAT 0.75 68.0 4.31e-01 100.0% 71.0%
3648112 7023.1.1.1 alpha bundles › helical ridge domain of D-alanyl transfer protein › helical ridge domain of D-alanyl transfer protein › helical ridge domain of D-alanyl transfer protein › MBOAT 0.75 68.0 5.05e-01 100.0% 83.0%
3958054 633.11.1.0 alpha bundles › Bromodomain-like › Nqo1C-terminal domain-like › Nqo1C-terminal domain-like 0.75 57.0 5.29e-01 86.6% 63.8%
3868 4204.1.1.1 alpha bundles › AF0941-like › AF0941-like › AF0941-like › AF0941-like 0.75 59.0 5.31e-01 84.1% 78.4%
None 0.74 67.0 4.34e-01 100.0% 69.4%
3514683 604.1.1.0 alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat 0.73 58.0 5.32e-01 87.8% 90.9%
3476610 604.1.1.0 alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat 0.73 58.0 5.02e-01 87.8% 81.5%
4657473 140.1.1.7 alpha bundles › Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › DALR_2 0.72 59.0 5.05e-01 92.7% 55.6%
4954682 109.4.1.0 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.71 60.0 5.76e-01 95.1% 78.9%
4429313 140.1.1.4 alpha bundles › Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › tRNA-synt_1e,DALR_2 0.71 61.0 5.16e-01 97.6% 56.4%
3472115 310.2.1.0 a+b two layers › RRF/tRNA synthetase additional domain-like › Ribosome recycling factor, RRF › Ribosome recycling factor, RRF 0.71 56.0 4.88e-01 85.4% 94.4%
None 0.70 61.0 4.59e-01 97.6% 60.5%
3399984 604.1.1.1 alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat › Spectrin 0.70 56.0 4.60e-01 87.8% 68.4%
4967183 4204.1.1.5 alpha bundles › AF0941-like › AF0941-like › AF0941-like › DUF2150 0.70 63.0 4.86e-01 100.0% 85.0%
3609553 109.4.1.0 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.68 56.0 4.14e-01 95.1% 33.3%
4954693 109.4.1.0 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.68 57.0 5.45e-01 95.1% 80.0%
3579534 192.29.1.144 alpha bundles › Long alpha-hairpin › bMERB domain (bivalent Mical/EHBP Rab binding) › bMERB domain (bivalent Mical/EHBP Rab binding) › SK_channel 0.67 55.0 4.19e-01 87.8% 54.6%
3487721 109.4.1.0 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.67 56.0 3.23e-01 96.3% 9.7%
4016267 109.4.1.1937 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Npa1, NopRA1, PF26140 0.66 57.0 3.20e-01 100.0% 18.0%
3518802 632.11.1.2 alpha bundles › immunoglobulin/albumin-binding domain-like › AF1782-like › AF1782-like › DOCK_N 0.65 47.0 4.22e-01 95.1% 54.8%
3301471 5067.1.1.17 alpha bundles › Multidrug efflux transporter AcrB transmembrane domain › Multidrug efflux transporter AcrB transmembrane domain › Multidrug efflux transporter AcrB transmembrane domain › AtTam38 0.64 55.0 4.97e-01 93.9% 73.6%
4950248 601.1.1.0 alpha bundles › Four-helical up-and-down bundle › alpha-catenin-related › alpha-catenin/vinculin 0.64 55.0 5.29e-01 100.0% 94.7%
5039845 186.1.1.0 alpha arrays › lambda integrase-N-like › lambda integrase-N › lambda integrase-N 0.64 49.0 4.36e-01 81.7% 60.9%
3846034 604.1.1.1 alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat › Spectrin 0.63 50.0 4.31e-01 87.8% 77.0%
5023246 5079.1.1.1 alpha duplicates or obligate multimers › Magnesium transporter MgtE membrane domain › Magnesium transporter MgtE membrane domain › Magnesium transporter MgtE membrane domain › MgtE 0.62 47.0 3.69e-01 79.3% 50.3%
4059355 185.1.1.1 alpha superhelices › Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin-like › Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin/Protein HNS-dependent expression A HdeA › Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin › Tryp_alpha_amyl 0.62 49.0 4.47e-01 86.6% 84.5%
54687 601.21.1.0 alpha bundles › Four-helical up-and-down bundle › FAD-dependent thiol oxidase › FAD-dependent thiol oxidase 0.61 45.0 4.08e-01 84.1% 57.1%
3505950 633.1.1.0 alpha bundles › Bromodomain-like › Bromodomain › Bromodomain 0.61 46.0 4.54e-01 84.1% 75.6%
3532347 109.4.1.209 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Katanin_con80 0.61 52.0 4.23e-01 100.0% 76.9%
3167402 108.1.1.116 alpha arrays › EF-hand › EF-hand-related › EF-hand › SAGA-Tad1 0.60 45.0 4.41e-01 78.0% 71.1%
3713658 603.1.1.0 alpha bundles › STAT-like › t-snare proteins › t-snare proteins 0.60 47.0 4.81e-01 87.8% 100.0%
4075843 185.1.1.1 alpha superhelices › Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin-like › Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin/Protein HNS-dependent expression A HdeA › Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin › Tryp_alpha_amyl 0.57 45.0 4.19e-01 85.4% 84.6%
3249893 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.56 46.0 4.51e-01 91.5% 96.7%
4401833 101.11.1.1 alpha arrays › HTH › Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 › Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 › PNPase 0.56 41.0 3.91e-01 79.3% 76.0%
4088578 101.35.1.0 alpha arrays › HTH › DNA repair regulatory protein RecX › DNA repair regulatory protein RecX 0.54 39.0 4.28e-01 80.5% 100.0%
4592728 101.11.1.1 alpha arrays › HTH › Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 › Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 › PNPase 0.53 41.0 4.05e-01 85.4% 91.1%
4617196 185.1.1.1 alpha superhelices › Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin-like › Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin/Protein HNS-dependent expression A HdeA › Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin › Tryp_alpha_amyl 0.50 42.0 4.10e-01 91.5% 93.3%
D2 medium residues 132-192
PDB