←Back to structures

hypothetical_protein_DMV_gp2

Euk-Vir

Dracaena_mottle_virus

hypothetical_protein_DMV_gp2__YP_610964__Dracaena_mottle_virus__380669

Identity

Accession:
YP_610964 ↗
Protein ID:
hypothetical_protein_DMV_gp2
Kingdom:
euk

Quality

74.6 mean pLDDT

Taxonomy

Pararnavirae› Artverviricota› Revtraviricetes› Ortervirales› Caulimoviridae› Badnavirus› Dracaena_mottle_virus

TaxID: 380669

Cluster

View cluster (33 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 4-99
PDB
Domain cluster: rep: ORF2__YP_002117530__Cycad_leaf_necrosis_virus__549205__D3-127
CATH (14)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3uuxB01 6.10.280.220 Special › Helix non-globular › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.71 58.0 5.56e-01 88.5% 81.8%
3whjA00 6.10.140.1710 Special › Helix non-globular › Helix Hairpins › 0.69 47.0 4.44e-01 75.0% 59.5%
3craA02 1.10.287.1080 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › MazG-like 0.69 36.0 3.22e-01 81.2% 37.5%
1br0A00 1.20.58.70 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.64 42.0 3.95e-01 74.0% 54.2%
2zxeA02 1.20.1110.10 Mainly Alpha › Up-down Bundle › Calcium-transporting ATPase, transmembrane domain › Calcium-transporting ATPase, transmembrane domain 0.62 47.0 3.08e-01 80.2% 52.9%
1uruA01 1.20.1270.60 Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › Arfaptin homology (AH) domain/BAR domain 0.61 52.0 4.00e-01 93.8% 42.1%
2b5dX01 3.20.110.10 Alpha Beta › Alpha-Beta Barrel › 7-stranded beta/alpha barrel › Glycoside hydrolase 38, N terminal domain 0.61 42.0 2.72e-01 70.8% 23.5%
1x04A00 1.20.1270.60 Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › Arfaptin homology (AH) domain/BAR domain 0.58 49.0 3.91e-01 93.8% 45.0%
4akgA11 1.20.920.20 Mainly Alpha › Up-down Bundle › Histone Acetyltransferase; Chain A › 0.58 42.0 2.95e-01 75.0% 81.9%
3lnrA00 1.20.120.1530 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › 0.57 44.0 3.74e-01 83.3% 71.2%
6g94A00 1.20.950.20 Mainly Alpha › Up-down Bundle › Fumarate Reductase Cytochrome B subunit › Transmembrane di-heme cytochromes, Chain C 0.53 39.0 3.20e-01 77.1% 73.3%
3nnrA00 1.10.357.10 Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 0.51 37.0 2.86e-01 74.0% 86.1%
4cclA02 3.40.366.30 Alpha Beta › 3-Layer(aba) Sandwich › Malonyl-Coenzyme A Acyl Carrier Protein; domain 2 › 50S ribosomal protein L16 arginine hydroxylase; Chain A, Domain 2 0.51 38.0 3.24e-01 80.2% 83.3%
4mn0A00 1.10.238.10 Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › EF-hand 0.50 37.0 2.96e-01 76.0% 71.8%
ECOD (18)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3625044 192.2.1.0 ↗ alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin 0.82 52.0 5.02e-01 71.9% 58.1%
3782049 4177.1.1.27 ↗ alpha duplicates or obligate multimers › BAR/IMD domain-like › BAR/IMD domain-like › BAR/IMD domain-like › BAR_4 0.70 60.0 4.24e-01 91.7% 39.6%
3600606 310.2.1.0 ↗ a+b two layers › RRF/tRNA synthetase additional domain-like › Ribosome recycling factor, RRF › Ribosome recycling factor, RRF 0.67 50.0 4.05e-01 85.4% 42.3%
3699448 3755.3.1.0 ↗ alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin 0.67 58.0 4.77e-01 92.7% 73.9%
3904307 3755.4.1.70 ↗ alpha bundles › YscO-like › Phosphatidylinositol 3-kinase regulatory subunit inter-SH2 domain › Phosphatidylinositol 3-kinase regulatory subunit inter-SH2 domain › KIF9 0.64 54.0 4.82e-01 92.7% 70.4%
5012473 5086.1.1.0 ↗ alpha bundles › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins 0.63 46.0 4.35e-01 75.0% 70.0%
3423798 5069.1.1.7 ↗ alpha bundles › Transmembrane heme-binding four-helical bundle › Transmembrane heme-binding four-helical bundle › Transmembrane di-heme cytochromes › Cytochrom_B561 0.62 46.0 3.71e-01 78.1% 57.8%
3207024 4177.1.1.9 ↗ alpha duplicates or obligate multimers › BAR/IMD domain-like › BAR/IMD domain-like › BAR/IMD domain-like › Snx8_BAR_dom 0.62 53.0 3.92e-01 94.8% 96.9%
3935393 106.1.1.8 ↗ alpha arrays › Globin-like › Globin-like › Globin-like › HisK-N-like 0.60 43.0 3.72e-01 75.0% 83.4%
3168735 4177.1.1.9 ↗ alpha duplicates or obligate multimers › BAR/IMD domain-like › BAR/IMD domain-like › BAR/IMD domain-like › Snx8_BAR_dom 0.60 52.0 3.75e-01 94.8% 84.2%
4016292 192.2.1.18 ↗ alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › ING 0.59 49.0 4.32e-01 88.5% 75.6%
3385713 5069.1.1.2 ↗ alpha bundles › Transmembrane heme-binding four-helical bundle › Transmembrane heme-binding four-helical bundle › Transmembrane di-heme cytochromes › Ni_hydr_CYTB 0.58 41.0 3.16e-01 74.0% 69.3%
3397195 603.1.1.134 ↗ alpha bundles › STAT-like › t-snare proteins › t-snare proteins › Wbp11 0.56 43.0 3.77e-01 79.2% 66.7%
3212426 4323.1.1.1 ↗ alpha bundles › helical bundle domain in vacuolar ATP synthase subunit C › helical bundle domain in vacuolar ATP synthase subunit C › helical bundle domain in vacuolar ATP synthase subunit C › V_ATPase_I 0.55 44.0 3.85e-01 86.5% 57.9%
3440194 601.3.1.4 ↗ alpha bundles › Four-helical up-and-down bundle › Histidine-containing phosphotransfer domain, HPT domain › Histidine-containing phosphotransfer domain, HPT domain › PTPLA 0.53 37.0 2.94e-01 74.0% 68.4%
3349750 3567.1.1.75 ↗ a+b duplicates or obligate multimers › MPER trimer › MPER trimer › MPER trimer › PTPLA 0.53 37.0 2.94e-01 74.0% 70.0%
4011501 632.2.1.0 ↗ alpha bundles › immunoglobulin/albumin-binding domain-like › Bacterial immunoglobulin/albumin-binding domains › Bacterial immunoglobulin/albumin-binding domains 0.52 38.0 3.42e-01 79.2% 93.8%
3782630 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.52 37.0 2.59e-01 75.0% 37.4%