←Back to structures

hypothetical_protein_EhV400

Euk-Vir

Emiliania_huxleyi_virus_86

hypothetical_protein_EhV400__YP_294158__Emiliania_huxleyi_virus_86__181082

Identity

Accession:
YP_294158 ↗
Protein ID:
hypothetical_protein_EhV400
Kingdom:
euk

Quality

68.5 mean pLDDT

Taxonomy

Bamfordvirae› Nucleocytoviricota› Megaviricetes› Algavirales› Phycodnaviridae› Coccolithovirus› Emiliania_huxleyi_virus_86

TaxID: 181082

Cluster

View cluster (7 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 36-133
PDB
D2 medium residues 134-194
PDB
Domain cluster: representative
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF08212.19 best Lipocalin_2 31.9 1.70e-07 96.7% 34.9%
CATH (39)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
7vljA01 2.30.39.10 Mainly Beta › Roll › Alpha-1-antitrypsin; domain 1 › Alpha-1-antitrypsin, domain 1 0.66 50.0 4.36e-01 85.2% 53.8%
1sqhA02 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.66 54.0 4.35e-01 96.7% 60.3%
1qz8A01 2.40.10.250 Mainly Beta › Beta Barrel › Thrombin, subunit H › Replicase NSP9 0.62 48.0 4.17e-01 90.2% 82.9%
3k44B00 3.30.2450.30 Alpha Beta › 2-Layer Sandwich › Secreted effector protein pipB2 fold › 0.62 48.0 3.78e-01 88.5% 99.3%
2qx2A00 3.10.570.10 Alpha Beta › Roll › sex pheromone staph- cam373 precursor fold › sex pheromone staph- cam373 precursor domain 0.61 51.0 3.31e-01 100.0% 27.7%
5ib0A00 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.61 50.0 4.03e-01 100.0% 57.7%
4hn3A00 3.10.570.10 Alpha Beta › Roll › sex pheromone staph- cam373 precursor fold › sex pheromone staph- cam373 precursor domain 0.60 50.0 3.24e-01 100.0% 34.0%
3f02B02 2.30.39.10 Mainly Beta › Roll › Alpha-1-antitrypsin; domain 1 › Alpha-1-antitrypsin, domain 1 0.59 47.0 4.03e-01 88.5% 56.0%
5ncsA02 2.30.39.10 Mainly Beta › Roll › Alpha-1-antitrypsin; domain 1 › Alpha-1-antitrypsin, domain 1 0.59 50.0 3.96e-01 100.0% 100.0%
1gpqB00 3.40.1420.10 Alpha Beta › 3-Layer(aba) Sandwich › Inhibitor of vertebrate lysozyme, Ivy › Inhibitor of vertebrate lysozyme 0.59 45.0 3.61e-01 85.2% 68.8%
2k89A00 3.10.20.870 Alpha Beta › Roll › Ubiquitin-like (UB roll) › PFU (PLAA family ubiquitin binding), C-terminal domain 0.58 46.0 4.25e-01 88.5% 80.0%
1mpgA01 3.30.310.20 Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › DNA-3-methyladenine glycosylase AlkA, N-terminal domain 0.58 46.0 3.85e-01 88.5% 49.1%
2k4vA00 3.30.160.370 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Domain of unknown function DUF5064 0.57 42.0 3.48e-01 83.6% 81.6%
8d3mI01 3.90.320.10 Alpha Beta › Alpha-Beta Complex › Lambda Exonuclease; Chain A › 0.57 48.0 3.41e-01 100.0% 44.0%
2fblB00 2.40.320.10 Mainly Beta › Beta Barrel › Hypothetical Protein Pfu-838710-001 › Hypothetical Protein Pfu-838710-001 0.57 45.0 3.45e-01 100.0% 36.5%
4arvA02 3.40.50.1240 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Phosphoglycerate mutase-like 0.56 40.0 3.31e-01 80.3% 98.4%
6fucA01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.55 43.0 4.02e-01 100.0% 66.3%
7mi4A01 3.90.320.10 Alpha Beta › Alpha-Beta Complex › Lambda Exonuclease; Chain A › 0.55 47.0 3.37e-01 100.0% 47.7%
6j5tB01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.54 45.0 3.77e-01 100.0% 56.7%
2pm6A00 1.25.40.1030 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › 0.54 41.0 2.67e-01 88.5% 68.4%
6aikB00 3.40.50.10300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › CoaB-like 0.54 41.0 2.72e-01 88.5% 52.9%
1o97D01 3.40.50.620 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HUPs 0.54 45.0 3.32e-01 100.0% 91.0%
2bm0A03 3.30.70.870 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Elongation Factor G (Translational Gtpase), domain 3 0.53 39.0 4.11e-01 91.8% 98.0%
1r17B01 2.60.40.1280 Mainly Beta › Sandwich › Immunoglobulin-like › 0.53 43.0 3.29e-01 95.1% 43.8%
1s1dA00 2.120.10.100 Mainly Beta › 6 Propeller › Neuraminidase › Apyrase 0.53 45.0 2.90e-01 98.4% 91.5%
3zm6A02 3.40.1190.10 Alpha Beta › 3-Layer(aba) Sandwich › UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase › Mur-like, catalytic domain 0.53 44.0 3.09e-01 98.4% 91.5%
3a7fA01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.52 43.0 3.90e-01 100.0% 69.9%
1x9mA01 3.30.420.10 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H 0.52 37.0 2.54e-01 75.4% 63.7%
2d9xA01 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.52 38.0 3.20e-01 80.3% 90.9%
1vw4H00 3.90.1180.10 Alpha Beta › Alpha-Beta Complex › Ribosomal Protein L13p; Chain: A; › Ribosomal protein L13 0.52 43.0 3.37e-01 100.0% 84.5%
3fetA00 3.40.50.620 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HUPs 0.52 43.0 3.27e-01 100.0% 81.2%
4je0B01 2.60.40.1280 Mainly Beta › Sandwich › Immunoglobulin-like › 0.51 40.0 3.18e-01 93.4% 47.4%
3vwaA01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.51 43.0 3.89e-01 100.0% 74.4%
4hadB02 3.30.360.10 Alpha Beta › 2-Layer Sandwich › Dihydrodipicolinate Reductase; domain 2 › Dihydrodipicolinate Reductase; domain 2 0.51 42.0 3.10e-01 100.0% 63.6%
1kz7C02 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.51 40.0 3.13e-01 86.9% 81.8%
3irpX01 2.60.40.1280 Mainly Beta › Sandwich › Immunoglobulin-like › 0.51 40.0 3.18e-01 95.1% 46.7%
1h10A00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.51 38.0 3.16e-01 83.6% 68.4%
1lgpA00 2.60.200.20 Mainly Beta › Sandwich › Tumour Suppressor Smad4 › 0.50 41.0 3.34e-01 93.4% 47.8%
5cemA01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.50 39.0 3.72e-01 100.0% 72.6%
ECOD (42)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3241736 9.1.1.48 ↗ beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins › Lipocalin_10 0.92 86.0 5.84e-01 100.0% 36.4%
3797694 9.1.1.0 ↗ beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins 0.92 86.0 5.93e-01 100.0% 41.7%
3618840 9.1.1.48 ↗ beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins › Lipocalin_10 0.92 86.0 5.71e-01 100.0% 35.2%
3933857 9.1.1.48 ↗ beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins › Lipocalin_10 0.91 85.0 5.68e-01 100.0% 35.2%
3626756 9.1.1.48 ↗ beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins › Lipocalin_10 0.91 86.0 5.73e-01 100.0% 37.6%
4003224 9.1.1.48 ↗ beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins › Lipocalin_10 0.91 85.0 5.87e-01 100.0% 40.6%
3224530 9.1.1.0 ↗ beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins 0.90 84.0 5.65e-01 100.0% 37.5%
4982318 3501.1.1.1 ↗ a+b two layers › protein PCC1 › protein PCC1 › protein PCC1 › Pcc1 0.69 47.0 4.73e-01 86.9% 71.7%
4574497 213.1.1.27 ↗ a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) › Acetyltransf_7 0.68 59.0 4.79e-01 100.0% 57.5%
4427723 375.1.1.145 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › FdhE_C 0.65 56.0 5.16e-01 98.4% 80.0%
4243735 2484.1.1.36 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DNA_pol_B_2 0.61 47.0 3.23e-01 85.2% 89.1%
None — 0.59 45.0 2.99e-01 90.2% 31.8%
5048565 213.1.1.0 ↗ a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) 0.57 47.0 3.71e-01 100.0% 48.7%
3703564 2484.1.1.1 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › HSP70 0.56 49.0 3.36e-01 100.0% 81.8%
4303957 2006.1.6.15 ↗ a/b three-layered sandwiches › HAD domain-like › HAD domain-related › vWA-like › DUF58 0.55 48.0 3.61e-01 100.0% 90.3%
3869545 220.1.1.125 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_PLEKHM2 0.55 45.0 3.60e-01 98.4% 83.6%
3386302 3186.1.1.1 ↗ a+b two layers › C-terminal domain of FliK › C-terminal domain of FliK › C-terminal domain of FliK › Flg_hook 0.54 45.0 4.17e-01 100.0% 87.1%
3958774 2006.1.6.0 ↗ a/b three-layered sandwiches › HAD domain-like › HAD domain-related › vWA-like 0.54 47.0 3.11e-01 100.0% 69.4%
3954346 2006.1.6.15 ↗ a/b three-layered sandwiches › HAD domain-like › HAD domain-related › vWA-like › DUF58 0.54 47.0 3.07e-01 100.0% 65.4%
3579987 220.1.1.160 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_MADD 0.54 44.0 3.69e-01 93.4% 77.3%
4180620 2008.1.1.4 ↗ a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › Cas_Cas4 0.54 42.0 3.17e-01 93.4% 68.6%
3742185 2003.1.5.26 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_28 0.54 45.0 2.84e-01 100.0% 60.6%
3782755 109.4.1.3316 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PF29173, PF29177 0.53 44.0 2.83e-01 98.4% 34.6%
3874298 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.53 39.0 3.04e-01 82.0% 82.6%
3259128 220.1.1.8 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › GRAM 0.53 41.0 3.35e-01 86.9% 81.6%
3955489 2484.1.1.211 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › OrfB_IS605, Cas12f1-like_TNB 0.53 43.0 3.10e-01 96.7% 61.4%
5003779 2008.1.1.0 ↗ a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like 0.53 40.0 2.73e-01 86.9% 64.9%
3574733 109.3.1.162 ↗ alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat › Ank, Ank_2, Ank_5 0.53 42.0 2.77e-01 88.5% 59.6%
3679706 207.1.1.55 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › LRR_1,LRR_8 0.53 38.0 2.58e-01 82.0% 37.3%
5020380 210.1.3.4 ↗ a+b four layers › Ntn/PP2C › Ntn › Class II glutamine amidotransferases › GATase_6 0.53 36.0 2.62e-01 95.1% 22.5%
3716928 2008.1.1.107 ↗ a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › NERD 0.52 43.0 3.18e-01 100.0% 60.3%
4242672 2008.1.1.0 ↗ a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like 0.52 43.0 3.11e-01 98.4% 36.5%
1122362 109.21.1.3 ↗ alpha superhelices › Repetitive alpha hairpins › Nucleoporin NUP85/Nucleoporin NUP145 C-terminal domain › Nucleoporin NUP85/Nucleoporin NUP145 C-terminal domain › Sec16_C 0.52 43.0 2.71e-01 96.7% 19.6%
3507295 304.166.1.9 ↗ a+b two layers › Alpha-beta plaits › Nup54 ferredoxin-like domain › Nup54 ferredoxin-like domain › PF29949 0.51 42.0 3.72e-01 100.0% 83.0%
3598207 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.51 38.0 3.11e-01 82.0% 78.4%
3882636 214.1.1.11 ↗ a+b two layers › SH2 › SH2 › SH2 › PF27628 0.51 38.0 3.12e-01 83.6% 43.1%
3166499 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.51 44.0 2.50e-01 100.0% 12.0%
3768329 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.51 38.0 3.08e-01 82.0% 80.8%
408239 206.1.1.76 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase, ABC1, Pkinase_fungal 0.51 43.0 2.91e-01 100.0% 25.2%
3062973 4059.1.1.1 ↗ a+b complex topology › Serpins › Serpins › Serpins › Serpin 0.51 43.0 2.77e-01 100.0% 28.0%
4253165 101.1.8.1 ↗ alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.50 38.0 2.93e-01 82.0% 62.1%
3810543 220.1.1.20 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_TFIIH 0.50 37.0 3.11e-01 80.3% 86.4%