Back to structures

hypothetical_protein_EhV452

Euk-Vir

Emiliania_huxleyi_virus_86

hypothetical_protein_EhV452__YP_294210__Emiliania_huxleyi_virus_86__181082

Identity

Accession:
YP_294210 ↗
Protein ID:
hypothetical_protein_EhV452
Kingdom:
euk

Quality

67.4 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 134-210
PDB
Domain cluster: representative
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF00505.26 best HMG_box 30.2 7.00e-07 97.4% 82.6%
CATH (16)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
7cyuA01 1.10.30.10 Mainly Alpha › Orthogonal Bundle › DNA Binding (I), subunit A › High mobility group box domain 0.92 66.0 7.63e-01 79.2% 100.0%
3fghA00 1.10.30.10 Mainly Alpha › Orthogonal Bundle › DNA Binding (I), subunit A › High mobility group box domain 0.92 68.0 7.24e-01 89.6% 88.1%
3tmmA01 1.10.30.10 Mainly Alpha › Orthogonal Bundle › DNA Binding (I), subunit A › High mobility group box domain 0.87 73.0 6.36e-01 96.1% 62.4%
1gt0D00 1.10.30.10 Mainly Alpha › Orthogonal Bundle › DNA Binding (I), subunit A › High mobility group box domain 0.86 66.0 6.60e-01 87.0% 78.5%
2cs1A00 1.10.30.10 Mainly Alpha › Orthogonal Bundle › DNA Binding (I), subunit A › High mobility group box domain 0.80 61.0 5.76e-01 88.3% 67.4%
2lefA00 1.10.30.10 Mainly Alpha › Orthogonal Bundle › DNA Binding (I), subunit A › High mobility group box domain 0.79 60.0 5.79e-01 85.7% 72.1%
1v64A00 1.10.30.10 Mainly Alpha › Orthogonal Bundle › DNA Binding (I), subunit A › High mobility group box domain 0.77 61.0 5.45e-01 96.1% 61.1%
2co9A00 1.10.30.10 Mainly Alpha › Orthogonal Bundle › DNA Binding (I), subunit A › High mobility group box domain 0.73 60.0 5.44e-01 94.8% 66.7%
1gnlA01 1.20.1270.20 Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › 0.70 46.0 3.77e-01 94.8% 38.1%
1wtyA00 1.20.120.330 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Nucleotidyltransferases domain 2 0.66 39.0 3.38e-01 89.6% 38.8%
1v63A00 1.10.30.10 Mainly Alpha › Orthogonal Bundle › DNA Binding (I), subunit A › High mobility group box domain 0.64 56.0 5.12e-01 96.1% 83.2%
1knzA01 6.10.280.20 Special › Helix non-globular › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Rotavirus non-structural protein NSP3, N-terminal domain 0.62 49.0 4.46e-01 89.6% 64.7%
2bbwA00 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.60 43.0 3.15e-01 76.6% 85.0%
3u9rB02 3.90.226.10 Alpha Beta › Alpha-Beta Complex › 2-enoyl-CoA Hydratase; Chain A, domain 1 › 2-enoyl-CoA Hydratase; Chain A, domain 1 0.59 47.0 3.32e-01 89.6% 47.1%
1s7zA01 1.20.120.780 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › DNA mimic ocr 0.54 37.0 3.48e-01 72.7% 57.4%
1icrA00 3.40.109.10 Alpha Beta › 3-Layer(aba) Sandwich › NADH Oxidase › NADH Oxidase 0.53 41.0 3.00e-01 84.4% 57.4%
ECOD (41)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3486506 190.1.1.0 alpha arrays › HMG-box-like › HMG-box › HMG-box 0.95 73.0 7.47e-01 87.0% 81.3%
3491886 190.1.1.1 alpha arrays › HMG-box-like › HMG-box › HMG-box › HMG_box 0.95 79.0 8.05e-01 89.6% 88.0%
3171915 190.1.1.1 alpha arrays › HMG-box-like › HMG-box › HMG-box › HMG_box 0.95 76.0 7.31e-01 88.3% 75.3%
3470186 190.1.1.1 alpha arrays › HMG-box-like › HMG-box › HMG-box › HMG_box 0.94 73.0 6.86e-01 87.0% 68.9%
3240782 190.1.1.1 alpha arrays › HMG-box-like › HMG-box › HMG-box › HMG_box 0.93 75.0 5.78e-01 88.3% 42.7%
3313375 190.1.1.1 alpha arrays › HMG-box-like › HMG-box › HMG-box › HMG_box 0.93 84.0 7.18e-01 100.0% 63.5%
3323413 190.1.1.1 alpha arrays › HMG-box-like › HMG-box › HMG-box › HMG_box 0.93 84.0 8.08e-01 100.0% 85.9%
2665668 190.1.1.1 alpha arrays › HMG-box-like › HMG-box › HMG-box › HMG_box 0.92 67.0 7.47e-01 80.5% 93.5%
3419147 190.1.1.1 alpha arrays › HMG-box-like › HMG-box › HMG-box › HMG_box 0.92 83.0 7.78e-01 100.0% 81.1%
3398172 190.1.1.1 alpha arrays › HMG-box-like › HMG-box › HMG-box › HMG_box 0.92 76.0 6.74e-01 92.2% 63.8%
3200876 190.1.1.0 alpha arrays › HMG-box-like › HMG-box › HMG-box 0.92 81.0 7.66e-01 93.5% 88.9%
4344838 190.1.1.1 alpha arrays › HMG-box-like › HMG-box › HMG-box › HMG_box 0.91 76.0 7.52e-01 92.2% 83.7%
4102250 190.1.1.1 alpha arrays › HMG-box-like › HMG-box › HMG-box › HMG_box 0.90 69.0 6.82e-01 87.0% 76.2%
3738109 190.1.1.0 alpha arrays › HMG-box-like › HMG-box › HMG-box 0.90 84.0 7.79e-01 100.0% 89.5%
3807764 190.1.1.0 alpha arrays › HMG-box-like › HMG-box › HMG-box 0.90 74.0 7.49e-01 98.7% 88.0%
4015915 190.1.1.3 alpha arrays › HMG-box-like › HMG-box › HMG-box › HMG_box_2 0.89 74.0 7.30e-01 87.0% 88.7%
3738741 190.1.1.1 alpha arrays › HMG-box-like › HMG-box › HMG-box › HMG_box 0.88 72.0 7.09e-01 85.7% 92.5%
3620454 190.1.1.1 alpha arrays › HMG-box-like › HMG-box › HMG-box › HMG_box 0.88 68.0 5.27e-01 87.0% 41.3%
3268169 190.1.1.1 alpha arrays › HMG-box-like › HMG-box › HMG-box › HMG_box 0.87 76.0 6.94e-01 100.0% 73.0%
3878202 190.1.1.1 alpha arrays › HMG-box-like › HMG-box › HMG-box › HMG_box 0.86 76.0 7.39e-01 100.0% 85.9%
3593421 190.1.1.0 alpha arrays › HMG-box-like › HMG-box › HMG-box 0.86 70.0 6.60e-01 90.9% 73.3%
3379763 190.1.1.1 alpha arrays › HMG-box-like › HMG-box › HMG-box › HMG_box 0.85 67.0 6.67e-01 87.0% 80.0%
4863395 190.1.1.1 alpha arrays › HMG-box-like › HMG-box › HMG-box › HMG_box 0.85 67.0 6.89e-01 92.2% 87.7%
3506153 190.1.1.1 alpha arrays › HMG-box-like › HMG-box › HMG-box › HMG_box 0.84 68.0 6.65e-01 90.9% 79.5%
3269300 190.1.1.1 alpha arrays › HMG-box-like › HMG-box › HMG-box › HMG_box 0.83 73.0 7.05e-01 100.0% 84.7%
3711589 190.1.1.0 alpha arrays › HMG-box-like › HMG-box › HMG-box 0.82 66.0 6.70e-01 96.1% 86.7%
3174920 190.1.1.1 alpha arrays › HMG-box-like › HMG-box › HMG-box › HMG_box 0.82 72.0 6.97e-01 94.8% 87.1%
3471666 190.1.1.1 alpha arrays › HMG-box-like › HMG-box › HMG-box › HMG_box 0.79 60.0 6.14e-01 85.7% 82.7%
3741238 190.1.1.1 alpha arrays › HMG-box-like › HMG-box › HMG-box › HMG_box 0.78 62.0 6.53e-01 89.6% 92.9%
4591229 190.1.1.8 alpha arrays › HMG-box-like › HMG-box › HMG-box › NUT 0.76 64.0 6.01e-01 97.4% 74.7%
3738195 190.1.1.0 alpha arrays › HMG-box-like › HMG-box › HMG-box 0.74 56.0 5.38e-01 96.1% 70.0%
54487 601.7.1.0 alpha bundles › Four-helical up-and-down bundle › HEPN › Nucleotidyltransferase substrate binding subunit/domain 0.68 40.0 3.44e-01 89.6% 39.1%
3471257 190.1.1.1 alpha arrays › HMG-box-like › HMG-box › HMG-box › HMG_box 0.68 58.0 5.19e-01 100.0% 66.4%
4137277 4336.1.1.1 alpha duplicates or obligate multimers › YheA/YmcA-like › YheA/YmcA-like › YheA/YmcA-like › Com_YlbF 0.62 53.0 4.60e-01 93.5% 65.2%
4408604 150.5.1.0 alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › ESAT-6 like › ESAT-6 like 0.60 55.0 3.75e-01 98.7% 38.4%
4209030 4336.1.1.1 alpha duplicates or obligate multimers › YheA/YmcA-like › YheA/YmcA-like › YheA/YmcA-like › Com_YlbF 0.59 48.0 4.25e-01 90.9% 65.8%
3882466 192.7.1.0 alpha bundles › Long alpha-hairpin › tRNA-binding arm › tRNA-binding arm 0.59 43.0 3.73e-01 94.8% 51.3%
3945729 604.32.1.0 alpha bundles › Spectrin repeat-like › Recombination protein uvsY › Recombination protein uvsY 0.58 52.0 4.27e-01 100.0% 56.9%
4644218 102.1.1.0 alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like 0.56 45.0 4.38e-01 88.3% 85.9%
3596922 192.2.1.0 alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin 0.54 48.0 3.78e-01 96.1% 46.8%
3686904 2486.1.1.3 a/b three-layered sandwiches › ClpP/crotonase › ClpP/crotonase › ClpP/crotonase › Carboxyl_trans 0.51 42.0 3.24e-01 94.8% 62.1%
D2 medium residues 16-119
PDB
Domain cluster: representative
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF00505.26 best HMG_box 33.4 6.80e-08 71.2% 100.0%
CATH (13)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3fghA00 1.10.30.10 Mainly Alpha › Orthogonal Bundle › DNA Binding (I), subunit A › High mobility group box domain 0.84 54.0 6.55e-01 75.0% 100.0%
1qrvA00 1.10.30.10 Mainly Alpha › Orthogonal Bundle › DNA Binding (I), subunit A › High mobility group box domain 0.83 57.0 6.65e-01 77.9% 100.0%
1gt0D00 1.10.30.10 Mainly Alpha › Orthogonal Bundle › DNA Binding (I), subunit A › High mobility group box domain 0.80 54.0 6.11e-01 81.7% 91.1%
2e6oA00 1.10.30.10 Mainly Alpha › Orthogonal Bundle › DNA Binding (I), subunit A › High mobility group box domain 0.78 54.0 5.86e-01 88.5% 85.1%
2cs1A00 1.10.30.10 Mainly Alpha › Orthogonal Bundle › DNA Binding (I), subunit A › High mobility group box domain 0.77 55.0 5.86e-01 84.6% 83.7%
2lefA00 1.10.30.10 Mainly Alpha › Orthogonal Bundle › DNA Binding (I), subunit A › High mobility group box domain 0.74 50.0 5.46e-01 81.7% 83.7%
3tmmA01 1.10.30.10 Mainly Alpha › Orthogonal Bundle › DNA Binding (I), subunit A › High mobility group box domain 0.74 59.0 5.81e-01 83.7% 79.8%
2co9A00 1.10.30.10 Mainly Alpha › Orthogonal Bundle › DNA Binding (I), subunit A › High mobility group box domain 0.65 47.0 4.75e-01 79.8% 75.5%
1aabA00 1.10.30.10 Mainly Alpha › Orthogonal Bundle › DNA Binding (I), subunit A › High mobility group box domain 0.65 48.0 5.27e-01 83.7% 97.6%
1v63A00 1.10.30.10 Mainly Alpha › Orthogonal Bundle › DNA Binding (I), subunit A › High mobility group box domain 0.60 46.0 4.69e-01 81.7% 89.1%
2yevA02 1.10.287.70 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.59 33.0 3.85e-01 78.8% 77.0%
2fnqA02 1.20.245.10 Mainly Alpha › Up-down Bundle › Lipoxygenase-1; domain 5 › Lipoxygenase-1; Domain 5 0.55 48.0 3.25e-01 100.0% 50.5%
4m0mA03 1.20.1270.430 Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › 0.50 32.0 3.52e-01 93.3% 82.3%
ECOD (48)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3864894 190.1.1.1 alpha arrays › HMG-box-like › HMG-box › HMG-box › HMG_box 0.90 67.0 7.46e-01 81.7% 94.1%
4673895 190.1.1.1 alpha arrays › HMG-box-like › HMG-box › HMG-box › HMG_box 0.89 66.0 6.81e-01 81.7% 80.0%
4102066 190.1.1.1 alpha arrays › HMG-box-like › HMG-box › HMG-box › HMG_box 0.89 67.0 6.75e-01 80.8% 77.1%
4344838 190.1.1.1 alpha arrays › HMG-box-like › HMG-box › HMG-box › HMG_box 0.87 64.0 7.21e-01 81.7% 98.8%
3854605 190.1.1.1 alpha arrays › HMG-box-like › HMG-box › HMG-box › HMG_box 0.86 68.0 6.67e-01 85.6% 77.3%
3738540 190.1.1.3 alpha arrays › HMG-box-like › HMG-box › HMG-box › HMG_box_2 0.86 65.0 6.92e-01 80.8% 90.0%
3730112 190.1.1.1 alpha arrays › HMG-box-like › HMG-box › HMG-box › HMG_box 0.86 64.0 5.61e-01 77.9% 61.1%
4344839 190.1.1.1 alpha arrays › HMG-box-like › HMG-box › HMG-box › HMG_box 0.85 64.0 6.72e-01 79.8% 85.3%
3506838 190.1.1.1 alpha arrays › HMG-box-like › HMG-box › HMG-box › HMG_box 0.85 61.0 6.41e-01 78.8% 81.1%
3331556 190.1.1.1 alpha arrays › HMG-box-like › HMG-box › HMG-box › HMG_box 0.85 64.0 6.71e-01 80.8% 85.3%
3323413 190.1.1.1 alpha arrays › HMG-box-like › HMG-box › HMG-box › HMG_box 0.83 60.0 6.63e-01 79.8% 91.8%
3689474 190.1.1.1 alpha arrays › HMG-box-like › HMG-box › HMG-box › HMG_box 0.83 61.0 6.23e-01 79.8% 79.0%
3431874 190.1.1.1 alpha arrays › HMG-box-like › HMG-box › HMG-box › HMG_box 0.83 61.0 6.76e-01 84.6% 94.1%
4030562 190.1.1.3 alpha arrays › HMG-box-like › HMG-box › HMG-box › HMG_box_2 0.83 58.0 6.74e-01 72.1% 100.0%
3800788 190.1.1.0 alpha arrays › HMG-box-like › HMG-box › HMG-box 0.83 62.0 7.01e-01 79.8% 100.0%
3738224 190.1.1.3 alpha arrays › HMG-box-like › HMG-box › HMG-box › HMG_box_2 0.81 60.0 6.84e-01 76.0% 100.0%
3419147 190.1.1.1 alpha arrays › HMG-box-like › HMG-box › HMG-box › HMG_box 0.81 59.0 6.31e-01 79.8% 86.7%
3992404 190.1.1.1 alpha arrays › HMG-box-like › HMG-box › HMG-box › HMG_box 0.81 62.0 6.79e-01 84.6% 97.6%
3398172 190.1.1.1 alpha arrays › HMG-box-like › HMG-box › HMG-box › HMG_box 0.80 64.0 6.42e-01 84.6% 81.9%
3593421 190.1.1.0 alpha arrays › HMG-box-like › HMG-box › HMG-box 0.80 60.0 6.43e-01 83.7% 91.1%
3689730 190.1.1.3 alpha arrays › HMG-box-like › HMG-box › HMG-box › HMG_box_2 0.80 59.0 6.50e-01 85.6% 94.1%
4591836 190.1.1.1 alpha arrays › HMG-box-like › HMG-box › HMG-box › HMG_box 0.78 56.0 5.48e-01 84.6% 69.1%
164888 190.1.1.1 alpha arrays › HMG-box-like › HMG-box › HMG-box › HMG_box 0.78 54.0 5.86e-01 88.5% 85.1%
3501463 190.1.1.1 alpha arrays › HMG-box-like › HMG-box › HMG-box › HMG_box 0.78 56.0 5.99e-01 84.6% 85.6%
3533358 190.1.1.1 alpha arrays › HMG-box-like › HMG-box › HMG-box › HMG_box 0.78 61.0 6.39e-01 82.7% 91.6%
3617561 190.1.1.1 alpha arrays › HMG-box-like › HMG-box › HMG-box › HMG_box 0.78 61.0 6.11e-01 81.7% 81.9%
3768093 190.1.1.1 alpha arrays › HMG-box-like › HMG-box › HMG-box › HMG_box 0.76 61.0 6.12e-01 84.6% 83.8%
4000466 190.1.1.1 alpha arrays › HMG-box-like › HMG-box › HMG-box › HMG_box 0.74 57.0 6.05e-01 87.5% 93.3%
3506153 190.1.1.1 alpha arrays › HMG-box-like › HMG-box › HMG-box › HMG_box 0.73 54.0 5.92e-01 82.7% 97.6%
3174920 190.1.1.1 alpha arrays › HMG-box-like › HMG-box › HMG-box › HMG_box 0.73 55.0 5.97e-01 78.8% 97.6%
3563314 190.1.1.1 alpha arrays › HMG-box-like › HMG-box › HMG-box › HMG_box 0.73 63.0 6.46e-01 94.2% 98.0%
3918881 190.1.1.3 alpha arrays › HMG-box-like › HMG-box › HMG-box › HMG_box_2 0.72 57.0 6.11e-01 84.6% 95.6%
3177211 190.1.1.1 alpha arrays › HMG-box-like › HMG-box › HMG-box › HMG_box 0.72 53.0 5.81e-01 83.7% 94.1%
3538509 190.1.1.1 alpha arrays › HMG-box-like › HMG-box › HMG-box › HMG_box 0.72 53.0 5.38e-01 83.7% 78.1%
3757366 190.1.1.3 alpha arrays › HMG-box-like › HMG-box › HMG-box › HMG_box_2 0.71 52.0 5.77e-01 81.7% 98.8%
3496552 190.1.1.3 alpha arrays › HMG-box-like › HMG-box › HMG-box › HMG_box_2 0.70 53.0 5.67e-01 82.7% 91.1%
3471676 190.1.1.3 alpha arrays › HMG-box-like › HMG-box › HMG-box › HMG_box_2 0.69 53.0 5.77e-01 84.6% 100.0%
2427 190.1.1.1 alpha arrays › HMG-box-like › HMG-box › HMG-box › HMG_box 0.69 53.0 5.62e-01 82.7% 93.3%
3597925 190.1.1.0 alpha arrays › HMG-box-like › HMG-box › HMG-box 0.68 48.0 5.54e-01 82.7% 100.0%
3519620 190.1.1.0 alpha arrays › HMG-box-like › HMG-box › HMG-box 0.68 54.0 5.32e-01 84.6% 88.2%
3999351 190.1.1.1 alpha arrays › HMG-box-like › HMG-box › HMG-box › HMG_box 0.68 57.0 5.47e-01 90.4% 85.6%
3882429 190.1.1.1 alpha arrays › HMG-box-like › HMG-box › HMG-box › HMG_box 0.67 55.0 4.37e-01 87.5% 44.4%
3486556 190.1.1.0 alpha arrays › HMG-box-like › HMG-box › HMG-box 0.67 52.0 5.63e-01 83.7% 100.0%
3191927 190.1.1.0 alpha arrays › HMG-box-like › HMG-box › HMG-box 0.65 51.0 4.97e-01 83.7% 90.4%
3620454 190.1.1.1 alpha arrays › HMG-box-like › HMG-box › HMG-box › HMG_box 0.64 56.0 4.93e-01 94.2% 94.0%
3916468 190.1.1.1 alpha arrays › HMG-box-like › HMG-box › HMG-box › HMG_box 0.63 48.0 5.06e-01 82.7% 90.5%
2923620 601.55.1.0 alpha bundles › Four-helical up-and-down bundle › anti-complement domain of BBK32 › anti-complement domain of BBK32 0.54 45.0 4.25e-01 90.4% 89.1%
3707118 601.1.1.0 alpha bundles › Four-helical up-and-down bundle › alpha-catenin-related › alpha-catenin/vinculin 0.51 39.0 3.32e-01 82.7% 65.0%