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hypothetical_protein_GMAR_ORF172

Euk-Vir

Golden_Marseillevirus

hypothetical_protein_GMAR_ORF172__YP_009310289__Golden_Marseillevirus__1720526

Identity

Accession:
YP_009310289 ↗
Protein ID:
hypothetical_protein_GMAR_ORF172
Kingdom:
euk

Quality

75.1 mean pLDDT

Taxonomy

Bamfordvirae› Nucleocytoviricota› Megaviricetes› Pimascovirales› Marseilleviridae› Marseillevirus› Golden_Marseillevirus

TaxID: 1720526

Cluster

View cluster (34 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 19-189
PDB
Domain cluster: representative
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF08975.17 best 2H-phosphodiest 23.5 6.50e-05 50.3% 45.7%
CATH (13)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1iuhA00 3.90.1140.10 Alpha Beta › Alpha-Beta Complex › Cyclic Phosphodiesterase; Chain: A, › Cyclic phosphodiesterase 0.72 67.0 6.52e-01 100.0% 91.3%
1jh6A00 3.90.1140.10 Alpha Beta › Alpha-Beta Complex › Cyclic Phosphodiesterase; Chain: A, › Cyclic phosphodiesterase 0.72 64.0 6.34e-01 99.4% 90.1%
2d4gA00 3.90.1140.10 Alpha Beta › Alpha-Beta Complex › Cyclic Phosphodiesterase; Chain: A, › Cyclic phosphodiesterase 0.71 61.0 6.17e-01 100.0% 93.4%
1wojA00 3.90.1740.10 Alpha Beta › Alpha-Beta Complex › 2',3'-cyclic nucleotide 3'-phosphodiesterase fold › 2',3'-cyclic nucleotide 3'-phosphodiesterase superfamily 0.60 54.0 5.02e-01 95.9% 97.6%
1xxaC00 3.30.1360.40 Alpha Beta › 2-Layer Sandwich › Gyrase A; domain 2 › 0.58 21.0 3.12e-01 81.9% 74.0%
3fvqA03 2.40.50.470 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.58 20.0 3.42e-01 77.2% 91.4%
1b9mA03 2.40.50.100 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › RNA polymerase II/Efflux pump adaptor protein, barrel-sandwich hybrid domain 0.57 24.0 3.58e-01 94.2% 91.5%
5t0oA02 3.30.70.1430 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Multidrug efflux transporter AcrB pore domain 0.55 29.0 3.64e-01 100.0% 83.5%
4bkwA03 3.30.500.40 Alpha Beta › 2-Layer Sandwich › Murine Class I Major Histocompatibility Complex, H2-DB; Chain A, domain 1 › 0.54 27.0 3.06e-01 98.2% 61.1%
1gutA00 2.40.50.100 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › RNA polymerase II/Efflux pump adaptor protein, barrel-sandwich hybrid domain 0.54 22.0 3.37e-01 93.0% 94.0%
1s62A00 3.30.1150.10 Alpha Beta › 2-Layer Sandwich › Fusion Protein Consisting Of Minor Coat Protein, Glycine Rich Linker, Tola, And A His Tag; Chain: A; Domain 2 › 0.53 31.0 3.74e-01 89.5% 91.2%
1kzlA02 2.40.30.20 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › 0.51 27.0 3.42e-01 92.4% 86.1%
3citA00 3.30.450.40 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › GAF domain 0.50 35.0 3.72e-01 90.6% 79.4%
ECOD (37)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3730050 264.1.1.5 ↗ beta barrels › LigT-like › LigT-related › LigT-related › 2H-phosphodiest 0.81 76.0 6.82e-01 100.0% 86.0%
3698263 264.1.1.0 ↗ beta barrels › LigT-like › LigT-related › LigT-related 0.76 71.0 5.84e-01 100.0% 74.6%
5028063 264.1.1.9 ↗ beta barrels › LigT-like › LigT-related › LigT-related › 2_5_RNA_ligase2 0.76 67.0 6.67e-01 100.0% 91.4%
1736491 264.1.1.2 ↗ beta barrels › LigT-like › LigT-related › LigT-related › Corona_NS2A 0.75 60.0 6.45e-01 97.1% 95.9%
5063905 264.1.1.9 ↗ beta barrels › LigT-like › LigT-related › LigT-related › 2_5_RNA_ligase2 0.75 65.0 6.53e-01 100.0% 92.3%
4020982 264.1.1.0 ↗ beta barrels › LigT-like › LigT-related › LigT-related 0.74 69.0 5.89e-01 100.0% 72.0%
3290691 264.1.1.9 ↗ beta barrels › LigT-like › LigT-related › LigT-related › 2_5_RNA_ligase2 0.74 69.0 6.35e-01 100.0% 79.9%
3955687 264.1.1.9 ↗ beta barrels › LigT-like › LigT-related › LigT-related › 2_5_RNA_ligase2 0.74 65.0 6.66e-01 99.4% 97.0%
5058094 264.1.1.1 ↗ beta barrels › LigT-like › LigT-related › LigT-related › LigT_PEase 0.73 66.0 6.61e-01 100.0% 93.7%
3962197 264.1.1.0 ↗ beta barrels › LigT-like › LigT-related › LigT-related 0.73 65.0 6.57e-01 99.4% 94.7%
4972305 264.1.1.7 ↗ beta barrels › LigT-like › LigT-related › LigT-related › AKAP7_NLS 0.73 67.0 6.61e-01 100.0% 92.7%
3698720 264.1.1.7 ↗ beta barrels › LigT-like › LigT-related › LigT-related › AKAP7_NLS 0.73 68.0 6.21e-01 100.0% 82.5%
5062926 264.1.1.9 ↗ beta barrels › LigT-like › LigT-related › LigT-related › 2_5_RNA_ligase2 0.72 60.0 6.17e-01 100.0% 90.9%
3338135 264.1.1.9 ↗ beta barrels › LigT-like › LigT-related › LigT-related › 2_5_RNA_ligase2 0.72 64.0 6.35e-01 100.0% 90.0%
3690734 264.1.1.9 ↗ beta barrels › LigT-like › LigT-related › LigT-related › 2_5_RNA_ligase2 0.72 62.0 6.33e-01 100.0% 93.9%
4965442 264.1.1.9 ↗ beta barrels › LigT-like › LigT-related › LigT-related › 2_5_RNA_ligase2 0.72 61.0 6.31e-01 99.4% 95.6%
276 264.1.1.4 ↗ beta barrels › LigT-like › LigT-related › LigT-related › CPDase 0.72 64.0 6.34e-01 99.4% 90.1%
4937535 264.1.1.1 ↗ beta barrels › LigT-like › LigT-related › LigT-related › LigT_PEase 0.72 65.0 6.49e-01 100.0% 94.3%
4972958 264.1.1.1 ↗ beta barrels › LigT-like › LigT-related › LigT-related › LigT_PEase 0.72 67.0 6.56e-01 100.0% 92.9%
None — 0.72 66.0 6.51e-01 100.0% 92.4%
None — 0.72 61.0 6.19e-01 99.4% 91.7%
4942504 264.1.1.1 ↗ beta barrels › LigT-like › LigT-related › LigT-related › LigT_PEase 0.71 66.0 6.50e-01 100.0% 92.9%
4046553 264.1.1.9 ↗ beta barrels › LigT-like › LigT-related › LigT-related › 2_5_RNA_ligase2 0.71 60.0 6.07e-01 99.4% 91.2%
4031839 264.1.1.9 ↗ beta barrels › LigT-like › LigT-related › LigT-related › 2_5_RNA_ligase2 0.70 60.0 6.05e-01 100.0% 92.9%
4951796 264.1.1.9 ↗ beta barrels › LigT-like › LigT-related › LigT-related › 2_5_RNA_ligase2 0.67 63.0 5.97e-01 100.0% 94.0%
3181856 264.1.1.9 ↗ beta barrels › LigT-like › LigT-related › LigT-related › 2_5_RNA_ligase2 0.65 60.0 5.47e-01 100.0% 92.9%
4019568 264.1.1.9 ↗ beta barrels › LigT-like › LigT-related › LigT-related › 2_5_RNA_ligase2 0.65 60.0 5.80e-01 100.0% 94.2%
5020125 310.3.1.0 ↗ a+b two layers › RRF/tRNA synthetase additional domain-like › General secretion pathway protein M (EpsM) periplasmic domain-related › General secretion pathway protein M (EpsM) periplasmic domain-related 0.62 23.0 3.45e-01 87.7% 78.6%
3385864 2.4.1.0 ↗ beta barrels › OB-fold › MOP-like › MOP-like 0.61 23.0 3.72e-01 93.6% 96.7%
3685834 306.3.1.0 ↗ a+b two layers › Glucose permease domain IIB-like › eIF1-like › eIF1-like 0.57 27.0 3.22e-01 88.9% 63.5%
3290869 304.25.1.1 ↗ a+b two layers › Alpha-beta plaits › Bacterial exopeptidase dimerisation domain › Bacterial exopeptidase dimerisation domain › M20_dimer 0.57 31.0 3.63e-01 88.9% 72.8%
3182852 264.1.1.10 ↗ beta barrels › LigT-like › LigT-related › LigT-related › tRNA_lig_CPD 0.55 49.0 4.68e-01 96.5% 97.0%
3797657 304.55.2.0 ↗ a+b two layers › Alpha-beta plaits › Origin of replication-binding domains › Transposase IS200-like 0.54 30.0 3.62e-01 89.5% 80.9%
1117716 3680.1.1.1 ↗ a+b complex topology › Zinc finger FYVE domain-containing protein 9 C-terminal domain › Zinc finger FYVE domain-containing protein 9 C-terminal domain › Zinc finger FYVE domain-containing protein 9 C-terminal domain › SARA_C 0.54 27.0 3.06e-01 98.2% 61.1%
3838094 3016.1.1.2 ↗ a+b two layers › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases › Aminotran_3 0.53 22.0 2.79e-01 87.1% 60.0%
3394338 3016.1.1.0 ↗ a+b two layers › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases 0.51 22.0 2.74e-01 90.1% 60.0%
4965843 2.4.1.19 ↗ beta barrels › OB-fold › MOP-like › MOP-like › DUF7861 0.51 29.0 3.68e-01 95.3% 97.9%