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hypothetical_protein_GMAR_ORF256

Euk-Vir

Golden_Marseillevirus

hypothetical_protein_GMAR_ORF256__YP_009310373__Golden_Marseillevirus__1720526

Identity

Accession:
YP_009310373 ↗
Protein ID:
hypothetical_protein_GMAR_ORF256
Kingdom:
euk

Quality

85.8 mean pLDDT

Taxonomy

Bamfordvirae› Nucleocytoviricota› Megaviricetes› Pimascovirales› Marseilleviridae› Marseillevirus› Golden_Marseillevirus

TaxID: 1720526

Cluster

View cluster (37 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 18-79
PDB
Domain cluster: rep: restriction_endonuclease__YP_009345354__Noumeavirus__1955558__D260-319
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF14311.13 best DUF4379 28.2 2.40e-06 79.0% 80.4%
D2 high residues 247-304
PDB
Domain cluster: rep: restriction_endonuclease__YP_009345354__Noumeavirus__1955558__D260-319
CATH (33)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4bwxA03 1.10.287.3700 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.62 46.0 4.18e-01 79.3% 77.5%
1igqB00 2.30.30.150 Mainly Beta › Roll › SH3 type barrels. › KorB, C-terminal domain 0.62 45.0 4.59e-01 79.3% 77.2%
1aalB00 4.10.410.10 Few Secondary Structures › Irregular › Factor Xa Inhibitor › Pancreatic trypsin inhibitor Kunitz domain 0.60 33.0 3.33e-01 70.7% 52.6%
3rauA00 1.25.40.280 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › alix/aip1 like domains 0.59 45.0 2.85e-01 86.2% 60.3%
5i4eA01 2.30.30.360 Mainly Beta › Roll › SH3 type barrels. › Myosin S1 fragment, N-terminal 0.59 40.0 4.44e-01 72.4% 89.1%
4iupA02 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.58 46.0 4.30e-01 86.2% 86.1%
1g5hB02 3.40.50.800 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Anticodon-binding domain 0.57 47.0 3.90e-01 93.1% 72.9%
2v1qA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.57 43.0 4.31e-01 81.0% 93.3%
4xcmA02 3.90.1720.10 Alpha Beta › Alpha-Beta Complex › endopeptidase fold (from Nostoc punctiforme) › endopeptidase domain like (from Nostoc punctiforme) 0.57 41.0 3.18e-01 75.9% 67.5%
4xr7F02 1.10.287.3700 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.57 42.0 3.66e-01 79.3% 68.9%
2d9tA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.57 43.0 4.67e-01 81.0% 95.9%
1lckA01 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.55 42.0 4.19e-01 81.0% 91.5%
7cfdA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.55 43.0 4.05e-01 86.2% 68.5%
7wa9A01 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.54 45.0 3.55e-01 100.0% 71.6%
2q5iA03 3.40.50.800 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Anticodon-binding domain 0.54 46.0 3.72e-01 100.0% 74.4%
1z1bA01 3.30.160.60 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Classic Zinc Finger 0.54 38.0 3.82e-01 94.8% 75.4%
3zuaA01 3.90.70.10 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases 0.54 43.0 3.32e-01 87.9% 42.0%
3kxtA00 2.30.30.610 Mainly Beta › Roll › SH3 type barrels. › Chromatin protein Cren7 0.54 39.0 4.03e-01 77.6% 91.1%
6bhdA03 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.54 43.0 4.21e-01 87.9% 85.7%
1x6gA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.54 43.0 3.88e-01 87.9% 77.8%
2do3A01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.54 40.0 4.28e-01 84.5% 92.2%
4fw1A02 2.30.30.10 Mainly Beta › Roll › SH3 type barrels. › Integrase, C-terminal domain superfamily, retroviral 0.53 39.0 4.01e-01 77.6% 83.3%
4wi1A02 3.40.50.800 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Anticodon-binding domain 0.53 46.0 3.66e-01 100.0% 64.2%
2i4lB02 3.40.50.800 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Anticodon-binding domain 0.53 43.0 3.64e-01 93.1% 71.3%
1jcfA03 3.90.640.10 Alpha Beta › Alpha-Beta Complex › Actin; Chain A, domain 4 › ATPase, substrate binding domain, subdomain 4 0.53 40.0 3.74e-01 86.2% 93.4%
5xilA02 3.40.50.800 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Anticodon-binding domain 0.53 44.0 3.55e-01 100.0% 63.3%
4c0dB00 2.30.30.1020 Mainly Beta › Roll › SH3 type barrels. › CCR4-NOT complex subunit 2/3/5, C-terminal domain 0.52 38.0 2.74e-01 81.0% 28.3%
1td6A02 3.30.1790.10 Alpha Beta › 2-Layer Sandwich › hypothetical protein mp506/mpn330, domain 2 › hypothetical protein mp506/mpn330, domain 2 0.52 41.0 3.51e-01 86.2% 79.3%
1adjB02 3.40.50.800 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Anticodon-binding domain 0.52 44.0 3.85e-01 100.0% 78.7%
1httA02 3.40.50.800 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Anticodon-binding domain 0.51 43.0 3.74e-01 100.0% 78.6%
7u32F02 2.30.30.10 Mainly Beta › Roll › SH3 type barrels. › Integrase, C-terminal domain superfamily, retroviral 0.51 39.0 4.08e-01 82.8% 96.1%
1bkbA02 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.51 39.0 3.76e-01 82.8% 83.1%
1te0A03 2.30.42.10 Mainly Beta › Roll › Pdz3 Domain › PDZ domain 0.50 36.0 3.15e-01 79.3% 91.0%
ECOD (39)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3605531 375.1.1.77 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › DUF4379 0.87 80.0 6.98e-01 100.0% 76.2%
3598807 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.87 79.0 7.39e-01 98.3% 89.9%
3592370 150.5.1.0 ↗ alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › ESAT-6 like › ESAT-6 like 0.86 80.0 6.13e-01 100.0% 53.3%
3712524 375.1.1.77 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › DUF4379 0.84 65.0 6.74e-01 82.8% 92.7%
3620947 4.8.1.0 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like 0.66 45.0 4.69e-01 81.0% 76.4%
4778018 1016.1.1.1 ↗ alpha arrays › Dimerization domain in caprin-1 and PAN3 › Dimerization domain in caprin-1 and PAN3 › Dimerization domain in caprin-1 and PAN3 › Pan3_PK 0.61 45.0 4.03e-01 79.3% 75.6%
3260957 214.1.1.0 ↗ a+b two layers › SH2 › SH2 › SH2 0.60 48.0 3.77e-01 89.7% 97.7%
3518287 4.1.1.347 ↗ beta barrels › SH3 › SH3 › SH3 › KOW7_SPT5, KOW6_SPT5 0.60 47.0 3.79e-01 86.2% 53.9%
3502900 376.1.1.20 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-RING_UBOX 0.59 37.0 3.31e-01 84.5% 43.5%
3929043 4.1.1.41 ↗ beta barrels › SH3 › SH3 › SH3 › NOT2_3_5_C 0.59 40.0 2.86e-01 77.6% 24.0%
3739884 1016.1.1.1 ↗ alpha arrays › Dimerization domain in caprin-1 and PAN3 › Dimerization domain in caprin-1 and PAN3 › Dimerization domain in caprin-1 and PAN3 › Pan3_PK 0.59 47.0 3.69e-01 89.7% 72.1%
3514631 1016.1.1.1 ↗ alpha arrays › Dimerization domain in caprin-1 and PAN3 › Dimerization domain in caprin-1 and PAN3 › Dimerization domain in caprin-1 and PAN3 › Pan3_PK 0.58 46.0 3.69e-01 89.7% 79.0%
4979113 620.1.1.6 ↗ alpha bundles › YfiT-like putative metal-dependent hydrolases › YfiT-like putative metal-dependent hydrolases › YfiT-like putative metal-dependent hydrolases › DinB_2 0.58 43.0 3.24e-01 82.8% 52.9%
2321219 1016.1.1.1 ↗ alpha arrays › Dimerization domain in caprin-1 and PAN3 › Dimerization domain in caprin-1 and PAN3 › Dimerization domain in caprin-1 and PAN3 › Pan3_PK 0.58 46.0 3.59e-01 89.7% 61.2%
3553625 376.1.1.1 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-C3HC4 0.57 40.0 4.14e-01 84.5% 80.0%
4069569 7502.1.1.1 ↗ a/b three-layered sandwiches › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS › HGTP_anticodon 0.57 44.0 3.75e-01 86.2% 93.9%
2321841 1016.1.1.1 ↗ alpha arrays › Dimerization domain in caprin-1 and PAN3 › Dimerization domain in caprin-1 and PAN3 › Dimerization domain in caprin-1 and PAN3 › Pan3_PK 0.56 45.0 3.45e-01 89.7% 65.5%
2561794 316.1.1.0 ↗ a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase 0.56 45.0 3.26e-01 89.7% 75.4%
3842631 4.1.1.243 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_Myosin-XVIIIa 0.56 44.0 4.10e-01 82.8% 77.1%
4032204 2484.1.1.178 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › SHS2_FTSA+FtsA 0.56 42.0 2.60e-01 84.5% 15.6%
4435043 2484.1.1.178 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › SHS2_FTSA+FtsA 0.55 41.0 2.56e-01 84.5% 15.5%
4980648 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.55 42.0 4.01e-01 87.9% 70.0%
3935130 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.55 42.0 4.29e-01 81.0% 89.1%
4082349 7502.1.1.1 ↗ a/b three-layered sandwiches › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS › HGTP_anticodon 0.54 47.0 3.86e-01 100.0% 71.8%
3211001 376.1.1.20 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-RING_UBOX 0.54 40.0 3.59e-01 84.5% 66.7%
4157435 7502.1.1.1 ↗ a/b three-layered sandwiches › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS › HGTP_anticodon 0.54 45.0 3.80e-01 94.8% 74.0%
4015071 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.54 43.0 4.06e-01 87.9% 72.9%
4011604 4.1.1.13 ↗ beta barrels › SH3 › SH3 › SH3 › MS_channel_2nd 0.53 43.0 3.95e-01 87.9% 72.0%
4011699 4224.1.1.0 ↗ few secondary structure elements › CHY zinc finger › CHY zinc finger › CHY zinc finger 0.53 41.0 4.13e-01 87.9% 81.7%
3570399 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.53 40.0 3.92e-01 93.1% 75.4%
3164004 2484.1.1.245 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › SHS2_FTSA, PilM_2, FtsA 0.53 38.0 2.41e-01 82.8% 15.9%
4025343 206.1.1.1 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase 0.52 43.0 2.62e-01 91.4% 20.7%
4608282 2484.1.1.70 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › FtsA 0.52 34.0 2.12e-01 82.8% 10.4%
4547689 2485.1.1.0 ↗ a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like 0.51 43.0 3.85e-01 100.0% 72.2%
None — 0.51 37.0 2.29e-01 82.8% 68.1%
5051788 12.1.1.0 ↗ beta sandwiches › Glycosyl hydrolase domain-like › Glycosyl hydrolase domain › Glycosyl hydrolase domain 0.51 39.0 3.38e-01 89.7% 91.4%
5066217 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.51 38.0 3.24e-01 79.3% 88.2%
3498865 314.1.1.0 ↗ a+b three layers › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases 0.50 40.0 2.61e-01 96.6% 70.5%
3579861 11.2.1.1 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain › C2 0.50 40.0 3.01e-01 100.0% 58.7%
D3 high residues 462-578
PDB
Domain cluster: rep: IMGVR_UViG_3300021426_000003-3300021426-Ga0224482_1000007218__D192-304
D4 medium residues 89-151
PDB
Domain cluster: rep: SRR1747052_scaffold_19_prodigal-single.1__X__X__00173__D11-79
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF14311.13 best DUF4379 34.3 3.10e-08 79.4% 85.7%
D5 medium residues 152-246
PDB
Domain cluster: rep: SRR1747018_scaffold_15_prodigal-single.1__X__X__00405__D414-500
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF14311.13 best DUF4379 38.3 1.80e-09 55.8% 96.4%
D6 medium residues 323-451
PDB
Domain cluster: rep: putative_restriction_endonuclease__YP_004347215__Lausannevirus__999883__D6-99
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF14311.13 best DUF4379 33.1 7.20e-08 45.7% 91.1%