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hypothetical_protein_GMAR_ORF275

Euk-Vir

Golden_Marseillevirus

hypothetical_protein_GMAR_ORF275__YP_009310392__Golden_Marseillevirus__1720526

Identity

Accession:: YP_009310392 ↗
Protein ID:: hypothetical_protein_GMAR_ORF275
Kingdom:: euk

Quality

70.9 mean pLDDT

Taxonomy

Bamfordvirae› Nucleocytoviricota› Megaviricetes› Pimascovirales› Marseilleviridae› Marseillevirus› Golden_Marseillevirus

TaxID: 1720526

Cluster

View cluster (5 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 468-560

PDB

Domain cluster: rep: hypothetical_protein_MEL_023__YP_009094524__Melbournevirus__1560514__D506-590

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF03457.20 best	HA	29.4	1.10e-06	59.1%	89.1%

CATH (1)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3favD00	1.10.287.1060	Mainly Alpha › Orthogonal Bundle › Helix Hairpins › ESAT-6-like	0.67	27.0	2.93e-01	79.6%	46.2%

ECOD (1)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3448849	605.8.1.5 ↗	alpha duplicates or obligate multimers › ROP-like › BAS1536-like › BAS1536-like › Med26	0.53	35.0	4.01e-01	73.1%	96.9%

D2 medium residues 21-103

PDB

D3 medium residues 119-224

PDB

Domain cluster: rep: NC_027299.1__YP_009146220.1__SUFP_046__00046__D4-101

Pfam (3)

Accession	Name	Score	E-value	Q cov	HMM cov
PF10544.16 best	T5orf172	47.0	4.30e-12	88.7%	95.9%
PF01541.31	GIY-YIG	23.8	6.30e-05	70.8%	56.4%
PF13455.13	MUG113	44.3	3.10e-11	69.8%	94.5%

D4 medium residues 244-315

PDB

Domain cluster: representative

CATH (31)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
2p5tA00	1.10.8.130	Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 ›	0.72	50.0	4.66e-01	73.6%	63.0%
2fupA00	1.20.58.300	Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › FlgN-like	0.71	62.0	5.12e-01	97.2%	71.7%
2uyyA02	1.10.1040.10	Mainly Alpha › Orthogonal Bundle › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2	0.70	63.0	5.28e-01	100.0%	98.4%
2fu2A00	1.20.1440.50	Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › Ta0600-like	0.67	38.0	3.75e-01	75.0%	51.3%
3fhnA01	6.10.280.210	Special › Helix non-globular › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Dsl1p vesicle tethering complex, Tip20p subunit, domain A	0.65	59.0	4.35e-01	100.0%	41.8%
1skvA00	1.10.287.660	Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin	0.65	48.0	5.02e-01	86.1%	87.5%
4gouA03	1.20.900.10	Mainly Alpha › Up-down Bundle › Dbl Homology Domain; Chain A › Dbl homology (DH) domain	0.65	51.0	3.77e-01	87.5%	73.1%
1kgqA01	1.10.166.10	Mainly Alpha › Orthogonal Bundle › Tetrahydrodipicolinate-N-succinyltransferase; Chain A, domain 1 › Tetrahydrodipicolinate-N-succinyltransferase, N-terminal domain	0.64	48.0	4.94e-01	81.9%	87.1%
1kfdA02	1.20.1060.10	Mainly Alpha › Up-down Bundle › Taq DNA Polymerase; Chain T, domain 4 › Taq DNA Polymerase; Chain T, domain 4	0.64	44.0	4.45e-01	86.1%	73.2%
2qywA00	1.20.58.400	Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › t-snare proteins	0.62	54.0	5.02e-01	100.0%	90.5%
4kzsA02	6.10.140.1870	Special › Helix non-globular › Helix Hairpins ›	0.62	52.0	5.32e-01	98.6%	97.1%
1ldjA02	1.20.1310.10	Mainly Alpha › Up-down Bundle › 5 helical Cullin repeat like › Cullin Repeats	0.62	55.0	4.62e-01	100.0%	72.4%
4hz4A02	1.20.1050.10	Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 ›	0.61	51.0	4.56e-01	98.6%	73.2%
2ic6A00	1.20.58.90	Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 ›	0.61	47.0	4.80e-01	86.1%	85.9%
3k3oA02	1.20.58.1360	Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 ›	0.60	47.0	4.58e-01	88.9%	84.5%
2odmA00	1.10.287.750	Mainly Alpha › Orthogonal Bundle › Helix Hairpins › SO2669-like	0.60	55.0	5.34e-01	100.0%	93.7%
3m9vA01	1.10.540.10	Mainly Alpha › Orthogonal Bundle › Butyryl-Coa Dehydrogenase, subunit A; domain 1 › Acyl-CoA dehydrogenase/oxidase, N-terminal domain	0.60	42.0	3.50e-01	73.6%	77.2%
2gtsA00	1.10.287.850	Mainly Alpha › Orthogonal Bundle › Helix Hairpins › HP0062-like domain	0.59	47.0	4.65e-01	87.5%	88.3%
1gnlA01	1.20.1270.20	Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 ›	0.59	46.0	3.69e-01	83.3%	71.2%
3c18A02	1.20.120.330	Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Nucleotidyltransferases domain 2	0.59	50.0	4.20e-01	91.7%	87.3%
4ip8A00	1.10.132.110	Mainly Alpha › Orthogonal Bundle › Topoisomerase I; Chain A, domain 4 › Serum amyloid A protein	0.58	47.0	4.15e-01	95.8%	60.0%
3vprA02	1.10.357.10	Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2	0.58	52.0	4.11e-01	100.0%	57.2%
2c2aA01	1.10.287.130	Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Signal transduction histidine kinase, dimerisation/phosphotransfer (DHp) domain	0.57	44.0	4.15e-01	86.1%	67.8%
1j1jA02	1.20.58.200	Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Translin; domain 2	0.57	49.0	4.70e-01	98.6%	83.5%
2vy1A00	1.10.4180.10	Mainly Alpha › Orthogonal Bundle › Protein LEAFY › Protein LEAFY	0.56	46.0	3.62e-01	94.4%	82.8%
1rv2D04	1.10.287.690	Mainly Alpha › Orthogonal Bundle › Helix Hairpins › B family DNA polymerase, finger domain	0.55	42.0	4.27e-01	87.5%	87.1%
3favD00	1.10.287.1060	Mainly Alpha › Orthogonal Bundle › Helix Hairpins › ESAT-6-like	0.54	43.0	4.21e-01	86.1%	91.0%
2bnlC00	1.10.490.10	Mainly Alpha › Orthogonal Bundle › Globin-like › Globins	0.54	45.0	3.74e-01	93.1%	64.2%
3sqnA03	1.10.1790.30	Mainly Alpha › Orthogonal Bundle › PTS-regulatory domain, PRD ›	0.54	39.0	3.41e-01	98.6%	47.5%
2ddhA01	1.10.540.10	Mainly Alpha › Orthogonal Bundle › Butyryl-Coa Dehydrogenase, subunit A; domain 1 › Acyl-CoA dehydrogenase/oxidase, N-terminal domain	0.51	42.0	3.57e-01	90.3%	62.7%
2ra1A01	1.20.58.790	Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 ›	0.51	44.0	4.03e-01	100.0%	94.9%

ECOD (24)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3787587	604.6.1.1 ↗	alpha bundles › Spectrin repeat-like › GAT-like domain › GAT-like domain › GAT	0.74	66.0	5.91e-01	98.6%	88.0%
3754639	150.5.1.106 ↗	alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › ESAT-6 like › ESAT-6 like › LIN9_C	0.72	55.0	5.17e-01	87.5%	68.2%
4384067	632.7.1.37 ↗	alpha bundles › immunoglobulin/albumin-binding domain-like › Heat shock protein 70kD (HSP70), C-terminal subdomain › Heat shock protein 70kD (HSP70), C-terminal subdomain › LETM1_RBD	0.72	59.0	5.10e-01	93.1%	58.2%
320075	632.6.1.1 ↗	alpha bundles › immunoglobulin/albumin-binding domain-like › Plasmid maintenance system epsilon/zeta, antidote epsilon subunit › Plasmid maintenance system epsilon/zeta, antidote epsilon subunit › Epsilon_antitox	0.70	49.0	4.48e-01	73.6%	61.1%
3641527	192.8.1.353 ↗	alpha bundles › Long alpha-hairpin › Eukaryotic DNA topoisomerase I, dispensable insert domain › Eukaryotic DNA topoisomerase I, dispensable insert domain › Med10	0.68	50.0	4.81e-01	84.7%	68.8%
3874415	109.4.1.1341 ↗	alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › COG3_N, COG3_C	0.68	60.0	3.94e-01	100.0%	28.1%
4328718	310.2.1.26 ↗	a+b two layers › RRF/tRNA synthetase additional domain-like › Ribosome recycling factor, RRF › Ribosome recycling factor, RRF › PigN	0.68	60.0	5.05e-01	100.0%	69.6%
3213117	604.6.1.0 ↗	alpha bundles › Spectrin repeat-like › GAT-like domain › GAT-like domain	0.66	59.0	5.41e-01	100.0%	95.8%
5043412	1025.1.1.0 ↗	alpha bundles › Stonustoxin helical domain › Stonustoxin helical domain › Stonustoxin helical domain	0.66	52.0	4.40e-01	86.1%	52.2%
3482082	3476.1.1.0 ↗	alpha arrays › RecQL4 helicase N-terminal domain › RecQL4 helicase N-terminal domain › RecQL4 helicase N-terminal domain	0.65	51.0	5.17e-01	87.5%	84.3%
3724622	145.1.1.0 ↗	alpha arrays › F-box domain › F-box domain › F-box domain	0.64	51.0	5.33e-01	93.1%	96.9%
3504889	604.22.1.1 ↗	alpha bundles › Spectrin repeat-like › tubulin binding cofactor C N-terminal domain › tubulin binding cofactor C N-terminal domain › TBCC_N	0.63	56.0	5.32e-01	100.0%	92.9%
3718498	604.6.1.0 ↗	alpha bundles › Spectrin repeat-like › GAT-like domain › GAT-like domain	0.62	52.0	4.88e-01	93.1%	83.3%
3173378	109.4.1.338 ↗	alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › RIC1	0.62	50.0	3.50e-01	93.1%	26.5%
4497411	109.4.1.1467 ↗	alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › COG3_N, COG3_C, PF31184	0.61	53.0	3.13e-01	100.0%	11.9%
4017711	2004.1.1.71 ↗	a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › IPPT	0.61	44.0	2.83e-01	93.1%	16.4%
3297061	632.1.1.0 ↗	alpha bundles › immunoglobulin/albumin-binding domain-like › Families 57/38 glycoside transferase middle domain › Families 57/38 glycoside transferase middle domain	0.61	48.0	4.11e-01	86.1%	55.7%
3270116	604.6.1.0 ↗	alpha bundles › Spectrin repeat-like › GAT-like domain › GAT-like domain	0.60	46.0	4.28e-01	86.1%	64.2%
3683114	5039.1.1.9 ↗	alpha bundles › Cytochrome c oxidase subunit III-like › Cytochrome c oxidase subunit III-like › Cytochrome c oxidase subunit III-like › DUF4220	0.60	51.0	3.60e-01	98.6%	38.4%
3711476	603.1.1.0 ↗	alpha bundles › STAT-like › t-snare proteins › t-snare proteins	0.59	48.0	4.35e-01	93.1%	84.0%
3662103	6155.1.1.7 ↗	alpha duplicates or obligate multimers › TOG superfamily › SWEET transporter › SWEET transporter › CLPTM1	0.57	49.0	4.47e-01	100.0%	76.0%
3640051	316.1.1.0 ↗	a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase	0.55	46.0	3.32e-01	95.8%	34.2%
5064617	5059.1.1.1 ↗	alpha bundles › Drug/Metabolite transporter › Drug/Metabolite transporter › Drug/Metabolite transporter › EamA	0.54	42.0	3.53e-01	90.3%	52.9%
4021030	601.1.1.0 ↗	alpha bundles › Four-helical up-and-down bundle › alpha-catenin-related › alpha-catenin/vinculin	0.51	43.0	3.17e-01	91.7%	43.8%

D5 medium residues 325-391

PDB

Domain cluster: representative

CATH (13)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
2ktaA01	6.10.140.530	Special › Helix non-globular › Helix Hairpins ›	0.68	52.0	5.55e-01	89.6%	100.0%
3fr3B02	1.20.1050.10	Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 ›	0.64	55.0	4.68e-01	100.0%	67.0%
1ydxA02	1.10.287.1120	Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Bipartite methylase S protein	0.63	42.0	3.81e-01	70.1%	51.1%
1ij5A01	1.20.58.90	Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 ›	0.62	41.0	3.97e-01	71.6%	60.5%
2kmfA01	1.20.58.810	Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Photosystem II Pbs27	0.61	54.0	4.72e-01	100.0%	85.3%
2c2aA01	1.10.287.130	Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Signal transduction histidine kinase, dimerisation/phosphotransfer (DHp) domain	0.60	40.0	3.70e-01	71.6%	52.2%
1gvnA00	1.10.8.130	Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 ›	0.60	39.0	3.61e-01	70.1%	50.6%
3ihjA02	1.10.287.1970	Mainly Alpha › Orthogonal Bundle › Helix Hairpins ›	0.59	34.0	4.06e-01	95.5%	94.7%
3icxA01	1.10.287.660	Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin	0.59	40.0	3.93e-01	71.6%	65.3%
1tjlA00	1.20.120.910	Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › DksA, coiled-coil domain	0.57	39.0	3.09e-01	71.6%	33.8%
2qqyA00	1.20.1260.10	Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle	0.52	38.0	3.16e-01	82.1%	44.2%
3lphC00	6.10.140.630	Special › Helix non-globular › Helix Hairpins ›	0.52	35.0	3.74e-01	70.1%	81.0%
1q44A00	3.40.50.300	Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases	0.50	43.0	2.86e-01	97.0%	77.8%

ECOD (13)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
4980175	150.1.1.0 ↗	alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › Ferritin/Heme oxygenase › Ferritin	0.65	45.0	3.52e-01	71.6%	65.0%
3570202	601.4.1.0 ↗	alpha bundles › Four-helical up-and-down bundle › Histidine kinase associated sensor domains › Histidine kinase associated sensor domains	0.60	52.0	4.64e-01	100.0%	76.0%
3804601	140.1.1.11 ↗	alpha bundles › Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › DALR_1	0.59	49.0	4.29e-01	98.5%	71.8%
3982421	605.1.1.1 ↗	alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase › HisKA	0.58	40.0	3.90e-01	71.6%	69.3%
4626953	604.5.1.3 ↗	alpha bundles › Spectrin repeat-like › PhoU-like (Pfam 01895) › PhoU-like (Pfam 01895) › ArAE_1_C	0.58	49.0	4.53e-01	97.0%	88.9%
3282266	5054.1.1.0 ↗	alpha complex topology › Voltage-gated ion channels › Voltage-gated ion channels › Voltage-gated ion channels	0.58	50.0	4.39e-01	100.0%	87.6%
3839108	310.2.1.65 ↗	a+b two layers › RRF/tRNA synthetase additional domain-like › Ribosome recycling factor, RRF › Ribosome recycling factor, RRF › MotA_ExbB	0.57	47.0	3.92e-01	95.5%	88.0%
4010395	622.4.1.26 ↗	alpha bundles › YvfG-like › Mite allergen Der p 5-related › Mite allergen Der p 5-related › HisKA	0.56	39.0	3.86e-01	71.6%	68.6%
3963070	604.1.1.263 ↗	alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat › DUF3375	0.56	45.0	3.64e-01	92.5%	77.1%
3456095	185.1.1.1 ↗	alpha superhelices › Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin-like › Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin/Protein HNS-dependent expression A HdeA › Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin › Tryp_alpha_amyl	0.54	47.0	4.21e-01	100.0%	80.0%
3845878	621.1.1.0 ↗	alpha bundles › Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain › Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain › Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain	0.52	42.0	4.15e-01	94.0%	88.0%
4929363	604.12.1.0 ↗	alpha bundles › Spectrin repeat-like › MIT domain › MIT domain	0.52	43.0	3.70e-01	97.0%	87.0%
4966860	150.1.1.1 ↗	alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › Ferritin/Heme oxygenase › Ferritin › Ferritin	0.51	43.0	3.54e-01	97.0%	93.8%

D6 medium residues 392-464

PDB

Domain cluster: rep: hypothetical_protein_LAU_0030__YP_004346998__Lausannevirus__999883__D437-497

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF03457.20 best	HA	33.9	4.40e-08	84.9%	95.3%