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hypothetical_protein_GMAR_ORF41

Euk-Vir

Golden_Marseillevirus

hypothetical_protein_GMAR_ORF41__YP_009310158__Golden_Marseillevirus__1720526

Identity

Accession:
YP_009310158 ↗
Protein ID:
hypothetical_protein_GMAR_ORF41
Kingdom:
euk

Quality

69.4 mean pLDDT

Taxonomy

Bamfordvirae› Nucleocytoviricota› Megaviricetes› Pimascovirales› Marseilleviridae› Marseillevirus› Golden_Marseillevirus

TaxID: 1720526

Cluster

Singleton — not in a non-trivial cluster

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 6-65
PDB
Domain cluster: representative
Pfam (2)
AccessionNameScoreE-valueQ covHMM cov
PF00646.39 best F-box 26.8 4.80e-06 68.3% 69.8%
PF12937.13 F-box-like 30.7 2.90e-07 61.7% 63.8%
CATH (25)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3v7dD01 1.20.1280.50 Mainly Alpha › Up-down Bundle › Monooxygenase › 0.70 60.0 5.15e-01 100.0% 81.0%
6m90A01 1.20.1280.50 Mainly Alpha › Up-down Bundle › Monooxygenase › 0.69 60.0 5.13e-01 100.0% 79.8%
2ovrB01 1.20.1280.50 Mainly Alpha › Up-down Bundle › Monooxygenase › 0.69 59.0 5.21e-01 100.0% 65.5%
4by6B00 2.30.30.1020 Mainly Beta › Roll › SH3 type barrels. › CCR4-NOT complex subunit 2/3/5, C-terminal domain 0.67 60.0 4.35e-01 100.0% 48.8%
1fs2A00 3.80.10.10 Alpha Beta › Alpha-Beta Horseshoe › Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) › Ribonuclease Inhibitor 0.64 59.0 3.79e-01 100.0% 29.0%
1b0bA00 1.10.490.10 Mainly Alpha › Orthogonal Bundle › Globin-like › Globins 0.63 44.0 3.42e-01 83.3% 31.9%
3l2oB01 1.20.1280.50 Mainly Alpha › Up-down Bundle › Monooxygenase › 0.62 53.0 4.70e-01 96.7% 90.9%
2jx0A00 1.20.120.330 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Nucleotidyltransferases domain 2 0.61 46.0 3.61e-01 81.7% 71.8%
2zfuA01 1.10.10.2150 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Ribosomal RNA-processing protein 8, N-terminal domain 0.60 40.0 4.26e-01 70.0% 100.0%
7qaqA01 3.40.50.11710 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Cyclodipeptide synthase 0.60 41.0 2.88e-01 73.3% 22.5%
4xaxB02 1.20.58.1290 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › CarD-like, C-terminal domain 0.59 52.0 4.44e-01 100.0% 71.7%
2xcjA00 1.10.260.40 Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains 0.59 39.0 3.47e-01 96.7% 47.6%
2xvtC00 1.10.150.510 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Receptor activity modifying family 0.58 42.0 3.84e-01 76.7% 67.1%
3onjA00 1.20.58.400 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › t-snare proteins 0.58 41.0 3.55e-01 75.0% 78.4%
3vldA02 1.25.40.580 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › 0.57 47.0 3.55e-01 91.7% 58.8%
1vq8V00 1.10.287.310 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.57 48.0 4.69e-01 91.7% 100.0%
3ajmB02 1.20.120.330 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Nucleotidyltransferases domain 2 0.56 40.0 3.27e-01 80.0% 81.2%
3l6aA01 1.25.40.180 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › 0.54 44.0 3.22e-01 100.0% 31.1%
5hayA02 1.25.40.440 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Nucleoporin, helical domain, central subdomain 0.54 42.0 3.94e-01 90.0% 97.5%
3bemB00 3.40.109.10 Alpha Beta › 3-Layer(aba) Sandwich › NADH Oxidase › NADH Oxidase 0.52 44.0 3.08e-01 96.7% 67.9%
7miqA02 1.20.1050.10 Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › 0.52 43.0 3.66e-01 96.7% 77.3%
1cp9A01 1.10.439.10 Mainly Alpha › Orthogonal Bundle › Penicillin Amidohydrolase; domain 1 › Penicillin Amidohydrolase, domain 1 0.52 44.0 3.40e-01 100.0% 93.8%
2l9bA00 1.25.40.630 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › 0.52 39.0 3.53e-01 86.7% 69.2%
3ibhA02 1.20.1050.10 Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › 0.51 42.0 3.44e-01 93.3% 85.6%
2w9zA01 1.10.472.10 Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like 0.50 41.0 3.36e-01 100.0% 63.9%
ECOD (90)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3221696 207.1.1.0 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats 0.89 63.0 3.70e-01 73.3% 26.0%
3680688 207.1.1.85 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › F-box-like 0.88 61.0 3.57e-01 71.7% 19.8%
3687689 207.1.1.79 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › F-box 0.87 62.0 3.77e-01 75.0% 25.6%
4017103 207.1.1.79 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › F-box 0.86 61.0 3.69e-01 75.0% 28.3%
3171073 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.85 63.0 4.91e-01 76.7% 70.4%
None — 0.85 61.0 3.49e-01 75.0% 19.0%
3991892 207.1.1.85 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › F-box-like 0.83 58.0 3.34e-01 73.3% 18.0%
3189379 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.83 63.0 6.14e-01 98.3% 73.8%
3724474 207.1.1.85 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › F-box-like 0.82 59.0 3.41e-01 75.0% 18.8%
3692319 145.1.1.0 ↗ alpha arrays › F-box domain › F-box domain › F-box domain 0.81 57.0 3.28e-01 73.3% 19.4%
3189161 207.1.1.0 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats 0.81 58.0 3.41e-01 75.0% 31.9%
4022140 207.1.1.85 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › F-box-like 0.80 60.0 3.43e-01 78.3% 22.7%
None — 0.80 56.0 3.29e-01 73.3% 20.4%
3814514 207.1.1.0 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats 0.80 56.0 3.31e-01 73.3% 22.7%
3206932 207.1.1.0 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats 0.79 60.0 3.62e-01 80.0% 16.4%
3691218 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.79 55.0 5.75e-01 73.3% 94.5%
3807610 207.1.1.85 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › F-box-like 0.78 52.0 3.69e-01 70.0% 56.0%
3194542 145.1.1.0 ↗ alpha arrays › F-box domain › F-box domain › F-box domain 0.78 55.0 3.19e-01 75.0% 16.8%
None — 0.77 54.0 3.63e-01 73.3% 42.8%
3639601 207.1.1.85 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › F-box-like 0.77 55.0 3.16e-01 75.0% 18.0%
3272640 207.1.1.79 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › F-box 0.77 54.0 3.42e-01 73.3% 30.7%
None — 0.77 53.0 3.12e-01 71.7% 21.9%
4011424 145.1.1.0 ↗ alpha arrays › F-box domain › F-box domain › F-box domain 0.76 69.0 5.90e-01 98.3% 94.4%
3804513 207.1.1.0 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats 0.75 52.0 3.29e-01 71.7% 33.5%
3256545 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.75 51.0 4.96e-01 70.0% 87.7%
3436851 207.1.1.79 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › F-box 0.75 52.0 3.16e-01 73.3% 24.8%
3460837 2004.1.1.23 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › SNF2-rel_dom 0.74 67.0 4.21e-01 100.0% 30.5%
3837286 145.1.1.1 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box 0.74 68.0 5.86e-01 100.0% 77.8%
3638344 145.1.1.1 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box 0.73 63.0 5.79e-01 100.0% 87.5%
None — 0.73 51.0 3.04e-01 73.3% 22.7%
3320433 145.1.1.1 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box 0.72 61.0 6.19e-01 91.7% 98.3%
None — 0.72 50.0 2.98e-01 73.3% 20.9%
3188576 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.72 63.0 5.59e-01 96.7% 88.2%
3485475 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.71 63.0 5.66e-01 100.0% 83.5%
3536855 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.71 64.0 5.48e-01 100.0% 89.5%
3456290 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.71 60.0 5.70e-01 96.7% 77.1%
3507975 145.1.1.0 ↗ alpha arrays › F-box domain › F-box domain › F-box domain 0.71 63.0 3.97e-01 100.0% 24.2%
3259075 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.71 60.0 5.50e-01 93.3% 92.3%
3809580 207.1.1.0 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats 0.71 50.0 2.97e-01 75.0% 14.7%
3300009 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.70 63.0 5.74e-01 100.0% 90.0%
4011985 145.1.1.0 ↗ alpha arrays › F-box domain › F-box domain › F-box domain 0.70 61.0 5.40e-01 100.0% 86.7%
3422328 145.1.1.1 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box 0.70 62.0 5.52e-01 100.0% 94.1%
3301911 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.70 61.0 5.47e-01 100.0% 89.4%
3601442 145.1.1.0 ↗ alpha arrays › F-box domain › F-box domain › F-box domain 0.69 60.0 5.85e-01 95.0% 100.0%
3425357 145.1.1.0 ↗ alpha arrays › F-box domain › F-box domain › F-box domain 0.69 64.0 5.82e-01 100.0% 89.7%
3304084 207.1.1.0 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats 0.69 50.0 3.02e-01 76.7% 18.1%
3886321 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.69 62.0 5.61e-01 100.0% 87.5%
3617852 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.69 60.0 5.73e-01 96.7% 94.3%
None — 0.69 49.0 2.94e-01 76.7% 14.0%
3726578 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.69 59.0 5.29e-01 96.7% 83.5%
3669897 207.1.1.0 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats 0.68 48.0 2.90e-01 75.0% 25.0%
3726637 207.1.1.0 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats 0.68 63.0 3.79e-01 100.0% 37.3%
3547224 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.68 57.0 5.00e-01 90.0% 70.6%
3344543 145.1.1.1 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box 0.68 60.0 5.39e-01 100.0% 88.2%
3903968 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.68 59.0 5.45e-01 95.0% 88.0%
3631167 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.68 57.0 5.19e-01 100.0% 88.2%
3655623 145.1.1.1 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box 0.68 60.0 4.83e-01 98.3% 84.3%
None — 0.67 62.0 3.52e-01 100.0% 11.4%
3816886 145.1.1.1 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box 0.67 61.0 3.91e-01 100.0% 33.9%
3363836 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.67 61.0 5.37e-01 100.0% 89.4%
3762363 145.1.1.0 ↗ alpha arrays › F-box domain › F-box domain › F-box domain 0.67 59.0 3.46e-01 100.0% 95.5%
3685535 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.67 59.0 5.38e-01 100.0% 95.0%
3833527 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.67 53.0 5.38e-01 96.7% 88.3%
3239033 145.1.1.1 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box 0.67 45.0 4.86e-01 96.7% 86.0%
3792735 145.1.1.0 ↗ alpha arrays › F-box domain › F-box domain › F-box domain 0.67 59.0 3.59e-01 100.0% 21.1%
3355293 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.66 59.0 4.98e-01 100.0% 94.0%
3711287 145.1.1.0 ↗ alpha arrays › F-box domain › F-box domain › F-box domain 0.66 59.0 4.93e-01 100.0% 62.5%
3320386 145.1.1.1 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box 0.66 58.0 5.07e-01 98.3% 95.6%
3575456 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.66 58.0 5.10e-01 100.0% 91.1%
3613821 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.66 59.0 5.61e-01 100.0% 92.9%
3623404 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.66 59.0 4.78e-01 100.0% 78.3%
3644704 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.66 57.0 5.12e-01 100.0% 89.4%
3477761 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.65 56.0 5.07e-01 100.0% 83.5%
3672250 207.1.1.116 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › LRR_FBXL15 0.65 60.0 4.12e-01 100.0% 41.1%
3273645 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.65 57.0 5.22e-01 100.0% 92.5%
3642624 207.1.1.116 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › LRR_FBXL15 0.65 60.0 4.01e-01 100.0% 32.4%
3439461 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.64 58.0 5.66e-01 98.3% 90.8%
3250931 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.64 53.0 5.03e-01 100.0% 92.0%
3337545 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.64 55.0 5.40e-01 96.7% 96.9%
3939710 145.1.1.1 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box 0.63 59.0 5.73e-01 100.0% 90.8%
3675534 145.1.1.1 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box 0.63 57.0 5.15e-01 100.0% 86.3%
3346715 145.1.1.1 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box 0.63 56.0 5.24e-01 100.0% 93.3%
3208423 109.3.1.168 ↗ alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat › Ank, Ank_2, Ank_3, Ank_5 0.63 56.0 3.25e-01 100.0% 13.1%
3726694 207.1.1.85 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › F-box-like 0.62 56.0 3.33e-01 100.0% 29.3%
3213262 145.1.1.0 ↗ alpha arrays › F-box domain › F-box domain › F-box domain 0.62 56.0 4.63e-01 96.7% 89.0%
4021018 207.1.1.0 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats 0.60 49.0 2.79e-01 90.0% 9.6%
3738910 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.60 50.0 4.59e-01 100.0% 82.4%
3186415 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.60 49.0 4.51e-01 100.0% 88.2%
None — 0.57 50.0 3.01e-01 96.7% 18.3%
3937705 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.55 45.0 2.85e-01 100.0% 27.8%
D2 high residues 67-153
PDB