←Back to structures
hypothetical_protein_HM89_gp260
Euk-VirPigeonpox_virus
hypothetical_protein_HM89_gp260__YP_009046461__Pigeonpox_virus__10264
Identity
- Accession:
- YP_009046461 ↗
- Protein ID:
- hypothetical_protein_HM89_gp260
- Kingdom:
- euk
Quality
84.3
mean pLDDT
Taxonomy
Bamfordvirae›
Nucleocytoviricota›
Pokkesviricetes›
Chitovirales›
Poxviridae›
Avipoxvirus›
Pigeonpox_virus
TaxID: 10264
Cluster
View cluster (11 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 576-666
Domain cluster:
rep: ankyrin_repeat_protein__YP_009046215__Penguinpox_virus__648998__D344-440
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF09372.16 best | PRANC | 72.3 | 4.80e-20 | 100.0% | 91.8% |
CATH (8)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5lbmA00 | 1.20.58.1000 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Metal-sensitive repressor, helix protomer | 0.65 | 48.0 | 5.01e-01 | 76.9% | 94.0% |
| 8a1gC01 | 1.20.1270.60 | Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › Arfaptin homology (AH) domain/BAR domain | 0.63 | 47.0 | 3.76e-01 | 79.1% | 74.6% |
| 3anwB00 | 1.20.58.2050 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.63 | 48.0 | 4.01e-01 | 82.4% | 55.6% |
| 3rh3A01 | 1.20.120.930 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Uncharacterised protein PF12889, N-terminal DUF3829 | 0.63 | 46.0 | 4.00e-01 | 75.8% | 63.9% |
| 4ymuD00 | 1.10.3720.10 | Mainly Alpha › Orthogonal Bundle › MetI-like fold › MetI-like | 0.61 | 52.0 | 4.04e-01 | 96.7% | 85.6% |
| 4hteA01 | 1.20.58.1730 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.56 | 44.0 | 3.76e-01 | 85.7% | 53.1% |
| 5f7cA02 | 3.20.20.80 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycosidases | 0.53 | 42.0 | 2.97e-01 | 87.9% | 29.2% |
| 2ihr101 | 1.20.58.410 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Release factor | 0.52 | 40.0 | 3.84e-01 | 82.4% | 87.7% |
ECOD (17)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4981743 | 632.11.1.0 ↗ | alpha bundles › immunoglobulin/albumin-binding domain-like › AF1782-like › AF1782-like | 0.68 | 48.0 | 4.38e-01 | 73.6% | 72.5% |
| 3389719 | 632.7.1.0 ↗ | alpha bundles › immunoglobulin/albumin-binding domain-like › Heat shock protein 70kD (HSP70), C-terminal subdomain › Heat shock protein 70kD (HSP70), C-terminal subdomain | 0.64 | 50.0 | 4.64e-01 | 83.5% | 75.7% |
| 5026394 | 605.1.1.0 ↗ | alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase | 0.62 | 46.0 | 4.20e-01 | 75.8% | 62.6% |
| 222984 | 529.1.1.1 ↗ | few secondary structure elements › Anaphylotoxins (complement system) › Anaphylotoxins (complement system) › Anaphylotoxins (complement system) › ANATO | 0.62 | 41.0 | 4.70e-01 | 73.6% | 91.2% |
| 4561607 | 4006.1.1.1 ↗ | alpha bundles › Release factor (Pfam 00472) N-terminal alpha helical domain › Release factor (Pfam 00472) N-terminal alpha helical domain › Release factor (Pfam 00472) N-terminal alpha helical domain › PCRF | 0.58 | 46.0 | 4.17e-01 | 83.5% | 75.0% |
| 3366512 | 4070.1.1.2 ↗ | alpha arrays › FtsH protease domain-like › FtsH protease domain-like › FtsH protease domain-like › Peptidase_M50 | 0.58 | 42.0 | 3.07e-01 | 75.8% | 66.3% |
| 3664015 | 3871.1.1.0 ↗ | alpha duplicates or obligate multimers › PHIST › PHIST › PHIST | 0.57 | 48.0 | 4.15e-01 | 90.1% | 65.0% |
| 3601984 | 601.1.1.0 ↗ | alpha bundles › Four-helical up-and-down bundle › alpha-catenin-related › alpha-catenin/vinculin | 0.56 | 38.0 | 3.49e-01 | 80.2% | 52.5% |
| 4066758 | 4006.1.1.1 ↗ | alpha bundles › Release factor (Pfam 00472) N-terminal alpha helical domain › Release factor (Pfam 00472) N-terminal alpha helical domain › Release factor (Pfam 00472) N-terminal alpha helical domain › PCRF | 0.56 | 43.0 | 4.22e-01 | 83.5% | 96.0% |
| 4984022 | 3755.3.1.0 ↗ | alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin | 0.54 | 43.0 | 3.99e-01 | 83.5% | 99.1% |
| 4683334 | 4006.1.1.0 ↗ | alpha bundles › Release factor (Pfam 00472) N-terminal alpha helical domain › Release factor (Pfam 00472) N-terminal alpha helical domain › Release factor (Pfam 00472) N-terminal alpha helical domain | 0.54 | 43.0 | 3.98e-01 | 86.8% | 75.0% |
| 4319295 | 4006.1.1.1 ↗ | alpha bundles › Release factor (Pfam 00472) N-terminal alpha helical domain › Release factor (Pfam 00472) N-terminal alpha helical domain › Release factor (Pfam 00472) N-terminal alpha helical domain › PCRF | 0.53 | 43.0 | 4.10e-01 | 86.8% | 85.7% |
| 4594578 | 4006.1.1.1 ↗ | alpha bundles › Release factor (Pfam 00472) N-terminal alpha helical domain › Release factor (Pfam 00472) N-terminal alpha helical domain › Release factor (Pfam 00472) N-terminal alpha helical domain › PCRF | 0.53 | 40.0 | 4.04e-01 | 83.5% | 96.8% |
| 4272021 | 4006.1.1.1 ↗ | alpha bundles › Release factor (Pfam 00472) N-terminal alpha helical domain › Release factor (Pfam 00472) N-terminal alpha helical domain › Release factor (Pfam 00472) N-terminal alpha helical domain › PCRF | 0.52 | 41.0 | 3.98e-01 | 84.6% | 91.0% |
| 4266510 | 4006.1.1.1 ↗ | alpha bundles › Release factor (Pfam 00472) N-terminal alpha helical domain › Release factor (Pfam 00472) N-terminal alpha helical domain › Release factor (Pfam 00472) N-terminal alpha helical domain › PCRF | 0.52 | 42.0 | 4.06e-01 | 87.9% | 87.6% |
| 4200274 | 4006.1.1.1 ↗ | alpha bundles › Release factor (Pfam 00472) N-terminal alpha helical domain › Release factor (Pfam 00472) N-terminal alpha helical domain › Release factor (Pfam 00472) N-terminal alpha helical domain › PCRF | 0.52 | 42.0 | 3.99e-01 | 86.8% | 86.7% |
| 4044992 | 4006.1.1.1 ↗ | alpha bundles › Release factor (Pfam 00472) N-terminal alpha helical domain › Release factor (Pfam 00472) N-terminal alpha helical domain › Release factor (Pfam 00472) N-terminal alpha helical domain › PCRF | 0.50 | 39.0 | 3.80e-01 | 86.8% | 89.5% |
D2
medium
residues 1-96
D3
medium
residues 236-362
Domain cluster:
rep: MN180249.1__QHJ75400.1__X__00002__D85-208
Pfam (4)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF12796.14 best | Ank_2 | 41.9 | 1.70e-10 | 66.1% | 78.9% |
| PF13857.13 | Ank_5 | 32.3 | 1.40e-07 | 44.1% | 96.4% |
| PF00023.37 | Ank | 17.0 | 8.40e-03 | 26.8% | 93.9% |
| PF00023.37 | Ank | 24.0 | 4.80e-05 | 26.8% | 93.9% |
D4
medium
residues 503-568
Domain cluster:
representative
CATH (24)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3keaA00 | 1.25.40.20 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Ankyrin repeat-containing domain | 0.80 | 64.0 | 4.12e-01 | 86.4% | 20.8% |
| 3pubA01 | 1.10.10.2400 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Lepidopteran low molecular weight (30 kD) lipoprotein, N-terminal domain | 0.70 | 50.0 | 4.85e-01 | 89.4% | 67.6% |
| 4q5rA02 | 1.20.1050.10 | Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › | 0.70 | 54.0 | 4.60e-01 | 86.4% | 73.2% |
| 3hugD00 | 1.10.10.1320 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Anti-sigma factor, zinc-finger domain | 0.69 | 50.0 | 5.14e-01 | 95.5% | 83.9% |
| 3c5wA00 | 1.25.10.10 | Mainly Alpha › Alpha Horseshoe › Leucine-rich Repeat Variant › Leucine-rich Repeat Variant | 0.65 | 52.0 | 3.60e-01 | 89.4% | 26.8% |
| 2oduA02 | 1.20.58.60 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.63 | 45.0 | 3.89e-01 | 75.8% | 74.3% |
| 1c5aA00 | 1.20.91.20 | Mainly Alpha › Up-down Bundle › Influenza Virus Matrix Protein; Chain A, domain 1 › Anaphylotoxins (complement system) | 0.62 | 47.0 | 4.74e-01 | 87.9% | 81.5% |
| 1w36B01 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.62 | 55.0 | 3.74e-01 | 100.0% | 28.6% |
| 3mdpA00 | 2.60.120.10 | Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls | 0.62 | 48.0 | 3.87e-01 | 84.8% | 89.3% |
| 2pbiA02 | 1.10.1240.60 | Mainly Alpha › Orthogonal Bundle › Methyltransferase, Methionine Synthase (B12-binding Domains); Chain A, domain 1 › | 0.62 | 48.0 | 4.26e-01 | 87.9% | 58.4% |
| 2rbdA01 | 1.20.1260.10 | Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle | 0.61 | 45.0 | 3.51e-01 | 80.3% | 46.0% |
| 1e3gA00 | 1.10.565.10 | Mainly Alpha › Orthogonal Bundle › Retinoid X Receptor › Retinoid X Receptor | 0.59 | 44.0 | 3.03e-01 | 81.8% | 79.2% |
| 4y97D00 | 1.10.3200.20 | Mainly Alpha › Orthogonal Bundle › Hypothetical protein af0941 › DNA Polymerase alpha, zinc finger | 0.58 | 45.0 | 3.35e-01 | 84.8% | 93.3% |
| 1l7aA00 | 3.40.50.1820 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain | 0.58 | 48.0 | 3.06e-01 | 90.9% | 33.0% |
| 4biuE01 | 1.10.287.130 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Signal transduction histidine kinase, dimerisation/phosphotransfer (DHp) domain | 0.57 | 40.0 | 3.46e-01 | 72.7% | 60.2% |
| 3uitA02 | 1.20.1270.460 | Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › | 0.57 | 39.0 | 3.29e-01 | 75.8% | 61.5% |
| 4f5cA04 | 1.25.50.20 | Mainly Alpha › Alpha Horseshoe › Zincin-like fold › | 0.56 | 47.0 | 3.09e-01 | 100.0% | 75.6% |
| 4e4eA01 | 1.10.287.990 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Fe,Mn superoxide dismutase (SOD) domain | 0.55 | 39.0 | 3.80e-01 | 72.7% | 85.9% |
| 2q9rA01 | 1.20.1590.10 | Mainly Alpha › Up-down Bundle › YP_001051499.1 fold like › YP_001051499.1 domain like | 0.55 | 40.0 | 2.99e-01 | 80.3% | 92.8% |
| 4dbgB02 | 1.10.8.10 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Ubiquitin-associated (UBA) domain | 0.55 | 43.0 | 4.44e-01 | 86.4% | 91.8% |
| 2hujA00 | 1.20.120.440 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › YppE-like | 0.54 | 40.0 | 3.38e-01 | 84.8% | 79.2% |
| 2r7rA03 | 1.10.10.1990 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Viral RNA-directed RNA polymerase, 4-helical domain | 0.52 | 39.0 | 3.77e-01 | 84.8% | 73.7% |
| 3u60A03 | 1.10.8.700 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Bacteriophage clamp loader A subunit, A domain | 0.51 | 37.0 | 3.58e-01 | 77.3% | 100.0% |
| 1j1jA02 | 1.20.58.200 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Translin; domain 2 | 0.51 | 44.0 | 4.11e-01 | 100.0% | 90.6% |
ECOD (24)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3278760 | 223.1.1.36 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains › MLTR_LBD | 0.78 | 64.0 | 4.70e-01 | 89.4% | 41.2% |
| 3283911 | 564.1.1.2 ↗ | alpha arrays › N-terminal, cytoplasmic domain of anti-sigma factors › N-terminal, cytoplasmic domain of anti-sigma factors › N-terminal, cytoplasmic domain of anti-sigma factors › zf-HC2 | 0.74 | 53.0 | 6.00e-01 | 90.9% | 100.0% |
| 3280612 | 564.1.1.2 ↗ | alpha arrays › N-terminal, cytoplasmic domain of anti-sigma factors › N-terminal, cytoplasmic domain of anti-sigma factors › N-terminal, cytoplasmic domain of anti-sigma factors › zf-HC2 | 0.74 | 57.0 | 5.61e-01 | 95.5% | 78.6% |
| 4126026 | 2004.1.1.494 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › ADDB_N, PF27467 | 0.73 | 57.0 | 3.23e-01 | 98.5% | 7.7% |
| 3486540 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.73 | 61.0 | 4.22e-01 | 92.4% | 28.2% |
| 3187973 | 603.1.1.0 ↗ | alpha bundles › STAT-like › t-snare proteins › t-snare proteins | 0.70 | 59.0 | 3.61e-01 | 92.4% | 15.6% |
| 385330 | 564.1.1.2 ↗ | alpha arrays › N-terminal, cytoplasmic domain of anti-sigma factors › N-terminal, cytoplasmic domain of anti-sigma factors › N-terminal, cytoplasmic domain of anti-sigma factors › zf-HC2 | 0.69 | 50.0 | 5.09e-01 | 95.5% | 81.2% |
| 3695992 | 109.4.1.414 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › MMS19_N | 0.68 | 56.0 | 4.74e-01 | 90.9% | 62.7% |
| 54052 | 4048.1.1.1 ↗ | alpha bundles › Second alpha-helical domain in heme-dependent catalases › Second alpha-helical domain in heme-dependent catalases › Second alpha-helical domain in heme-dependent catalases › Catalase-rel | 0.68 | 58.0 | 5.77e-01 | 97.0% | 91.4% |
| 3610704 | 101.35.1.0 ↗ | alpha arrays › HTH › DNA repair regulatory protein RecX › DNA repair regulatory protein RecX | 0.66 | 50.0 | 4.64e-01 | 80.3% | 68.7% |
| 3960709 | 4048.1.1.1 ↗ | alpha bundles › Second alpha-helical domain in heme-dependent catalases › Second alpha-helical domain in heme-dependent catalases › Second alpha-helical domain in heme-dependent catalases › Catalase-rel | 0.66 | 54.0 | 5.10e-01 | 90.9% | 76.2% |
| 3682134 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.65 | 50.0 | 5.19e-01 | 86.4% | 96.7% |
| 4855172 | 4048.1.1.1 ↗ | alpha bundles › Second alpha-helical domain in heme-dependent catalases › Second alpha-helical domain in heme-dependent catalases › Second alpha-helical domain in heme-dependent catalases › Catalase-rel | 0.65 | 51.0 | 5.26e-01 | 86.4% | 95.0% |
| 3897972 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.64 | 49.0 | 4.79e-01 | 86.4% | 77.3% |
| 4317463 | 604.39.1.3 ↗ | alpha bundles › Spectrin repeat-like › S-component of energy-coupling factor (ECF) transporters › S-component of energy-coupling factor (ECF) transporters › ECF-ribofla_trS | 0.61 | 47.0 | 3.63e-01 | 89.4% | 40.0% |
| 5029950 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.61 | 44.0 | 4.76e-01 | 81.8% | 94.5% |
| 3708406 | 226.1.1.0 ↗ | a+b two layers › POZ domain › POZ domain › POZ domain | 0.60 | 51.0 | 3.72e-01 | 98.5% | 52.3% |
| 4029952 | 4106.1.1.1 ↗ | few secondary structure elements › Zinc hairpin stack › Zinc hairpin stack › Zinc hairpin stack › DHHC | 0.59 | 43.0 | 3.16e-01 | 77.3% | 76.2% |
| 4950305 | 3932.1.1.0 ↗ | alpha bundles › CRISPR/Cas system-associated protein Csm6 6H domain › CRISPR/Cas system-associated protein Csm6 6H domain › CRISPR/Cas system-associated protein Csm6 6H domain | 0.57 | 39.0 | 3.90e-01 | 80.3% | 68.6% |
| 4136919 | 192.2.1.0 ↗ | alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin | 0.55 | 39.0 | 2.94e-01 | 77.3% | 84.9% |
| 5047446 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.53 | 38.0 | 3.23e-01 | 98.5% | 43.3% |
| None | — | 0.53 | 40.0 | 2.55e-01 | 83.3% | 29.2% | |
| 4025468 | 4953.1.1.0 ↗ | beta barrels › L-aspartase C-terminal domain-like › L-aspartase C-terminal domain-like › L-aspartase C-terminal domain-like | 0.52 | 36.0 | 3.13e-01 | 75.8% | 60.8% |
| 4682722 | 237.1.1.5 ↗ | a+b complex topology › ADP-ribosylation › ADP-ribosylation › ADP-ribosylation › RolB_RolC | 0.52 | 40.0 | 2.83e-01 | 81.8% | 77.5% |