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hypothetical_protein_HhV6Bgp009

Euk-Vir

Human_betaherpesvirus_6B

hypothetical_protein_HhV6Bgp009__NP_050186__Human_betaherpesvirus_6B__32604

Identity

Accession:
NP_050186 ↗
Protein ID:
hypothetical_protein_HhV6Bgp009
Kingdom:
euk

Quality

78.2 mean pLDDT

Taxonomy

Heunggongvirae› Peploviricota› Herviviricetes› Herpesvirales› Orthoherpesviridae› Roseolovirus› Human_betaherpesvirus_6B

TaxID: 32604

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 9-41
PDB
Domain cluster: representative
CATH (8)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1fc6A02 2.30.42.10 Mainly Beta › Roll › Pdz3 Domain › PDZ domain 0.62 45.0 3.36e-01 81.8% 91.3%
5mybA02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.61 48.0 3.64e-01 100.0% 77.1%
4zg5A00 3.40.1210.10 Alpha Beta › 3-Layer(aba) Sandwich › Stationary-phase Survival Protein Sure Homolog; Chain: A, › Survival protein SurE-like phosphatase/nucleotidase 0.58 41.0 2.55e-01 78.8% 54.3%
2o95B00 3.40.140.10 Alpha Beta › 3-Layer(aba) Sandwich › Cytidine Deaminase; domain 2 › Cytidine Deaminase, domain 2 0.58 42.0 2.75e-01 78.8% 27.3%
4qpiB00 2.60.120.20 Mainly Beta › Sandwich › Jelly Rolls › 0.58 41.0 2.58e-01 87.9% 12.0%
1wjqA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.54 38.0 3.19e-01 90.9% 91.0%
1wjrA00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.53 38.0 2.78e-01 90.9% 71.7%
4c5eC02 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.52 37.0 2.91e-01 90.9% 69.8%
ECOD (5)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4890564 101.1.2.869 ↗ alpha arrays › HTH › HTH › winged helix domain › IML1_N 0.58 43.0 3.55e-01 100.0% 74.1%
3690613 216.1.1.0 ↗ a+b two layers › UBC-like › UBC-like › UBC-like 0.58 40.0 2.79e-01 78.8% 71.9%
5053718 223.3.1.3 ↗ a+b three layers › Profilin-like › a+b domain in beta-lactamase/transpeptidase-like proteins › a+b domain in beta-lactamase/transpeptidase-like proteins › Transpeptidase 0.56 42.0 2.52e-01 100.0% 35.5%
5059561 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.53 37.0 2.85e-01 81.8% 59.0%
4957597 101.1.2.14 ↗ alpha arrays › HTH › HTH › winged helix domain › HTH_5 0.50 35.0 2.79e-01 81.8% 86.7%
D2 medium residues 93-400_453-485
PDB
Domain cluster: rep: U7__NP_042898__Human_betaherpesvirus_6A__32603__D746-1090
CATH (11)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3qweA00 1.20.1270.60 Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › Arfaptin homology (AH) domain/BAR domain 0.74 27.0 3.15e-01 73.6% 44.2%
4e40A00 1.20.1260.80 Mainly Alpha › Up-down Bundle › Ferritin › 0.70 33.0 3.96e-01 73.3% 63.3%
2k19A00 1.20.1440.140 Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › 0.69 16.0 3.27e-01 83.0% 72.4%
3m7gA02 1.10.8.1010 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › 0.66 19.0 4.12e-01 90.3% 100.0%
3wmeA01 1.20.1560.10 Mainly Alpha › Up-down Bundle › ABC transporter transmembrane region fold › ABC transporter type 1, transmembrane domain 0.65 31.0 3.24e-01 89.7% 47.3%
3ukmA01 1.10.287.70 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.63 25.0 2.92e-01 82.4% 47.2%
4gc0A02 1.20.1250.20 Mainly Alpha › Up-down Bundle › Growth Hormone; Chain: A; › MFS general substrate transporter like domains 0.62 34.0 4.18e-01 92.7% 80.5%
2fzfA01 1.20.1260.10 Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle 0.60 23.0 3.54e-01 83.9% 80.7%
1eq1A00 1.20.120.20 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Apolipoprotein 0.58 24.0 3.37e-01 85.6% 75.3%
2rd3D00 1.20.910.10 Mainly Alpha › Up-down Bundle › Heme Oxygenase; Chain A › Heme oxygenase-like 0.52 25.0 3.09e-01 94.1% 67.9%
1z72A00 1.20.910.10 Mainly Alpha › Up-down Bundle › Heme Oxygenase; Chain A › Heme oxygenase-like 0.51 24.0 3.01e-01 94.4% 67.6%
ECOD (17)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4888150 1075.4.1.9 ↗ alpha bundles › Type II ABC exporter transmembrane domain fold › Type I ABC exporter transmembrane domain fold › Type I ABC exporter transmembrane domain fold › ABC_tran+ABC_membrane 0.67 33.0 3.37e-01 90.0% 47.1%
3280495 133.2.1.1 ↗ alpha bundles › DH domain-like › Methenyltetrahydrofolate cyclohydrolase-like › Methenyltetrahydrofolate cyclohydrolase-like › FTCD_C 0.66 26.0 3.32e-01 94.4% 59.3%
4276314 3755.3.1.0 ↗ alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin 0.64 28.0 3.52e-01 73.3% 65.0%
3752375 604.12.1.0 ↗ alpha bundles › Spectrin repeat-like › MIT domain › MIT domain 0.62 32.0 4.06e-01 78.3% 82.6%
5054998 5050.1.1.9 ↗ alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › MFS_1 0.62 33.0 4.08e-01 90.9% 81.0%
3840961 1075.4.1.2 ↗ alpha bundles › Type II ABC exporter transmembrane domain fold › Type I ABC exporter transmembrane domain fold › Type I ABC exporter transmembrane domain fold › ABC_membrane_2 0.61 31.0 3.13e-01 90.3% 46.3%
4836806 1063.1.1.1 ↗ alpha complex topology › Tegument protein U14 › Tegument protein U14 › Tegument protein U14 › Herpes_pp85 0.60 48.0 4.56e-01 90.3% 69.5%
3513146 5050.1.1.0 ↗ alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter 0.60 34.0 4.18e-01 93.3% 85.1%
3631798 604.5.1.0 ↗ alpha bundles › Spectrin repeat-like › PhoU-like (Pfam 01895) › PhoU-like (Pfam 01895) 0.57 32.0 3.69e-01 73.3% 71.5%
5050186 5050.1.1.9 ↗ alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › MFS_1 0.57 32.0 4.06e-01 90.3% 88.1%
3224844 5050.1.1.11 ↗ alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › UNC-93 0.57 30.0 3.81e-01 88.6% 82.9%
4417464 3758.1.1.4 ↗ alpha bundles › Bacterial hemolysins-like › Bacterial hemolysins › Bacterial hemolysins › TelA 0.56 30.0 3.50e-01 82.7% 69.4%
4977940 5050.1.1.9 ↗ alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › MFS_1 0.55 29.0 3.72e-01 88.0% 85.0%
5026838 4177.1.1.0 ↗ alpha duplicates or obligate multimers › BAR/IMD domain-like › BAR/IMD domain-like › BAR/IMD domain-like 0.54 37.0 4.36e-01 85.0% 95.5%
3193529 3922.1.1.0 ↗ alpha bundles › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3 0.53 29.0 2.90e-01 73.9% 52.6%
1687153 3962.2.1.1 ↗ alpha arrays › N-terminal helical domain in restriction-modification system methylation subunit-like › Helical domain in type ISP restriction-modification enzymes › Helical domain in type ISP restriction-modification enzymes › ISP_coupler 0.53 25.0 3.63e-01 84.8% 98.7%
3412425 1203.1.2.1 ↗ alpha bundles › Shroom domain 2 › Shroom domain 2 › Human SD2 › ASD2 0.52 28.0 3.87e-01 74.8% 100.0%