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hypothetical_protein_HhV6Bgp083

Euk-Vir

Human_betaherpesvirus_6B

hypothetical_protein_HhV6Bgp083__NP_050258__Human_betaherpesvirus_6B__32604

Identity

Accession:
NP_050258 ↗
Protein ID:
hypothetical_protein_HhV6Bgp083
Kingdom:
euk

Quality

77.7 mean pLDDT

Taxonomy

Heunggongvirae› Peploviricota› Herviviricetes› Herpesvirales› Orthoherpesviridae› Roseolovirus› Human_betaherpesvirus_6B

TaxID: 32604

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 23-75
PDB
Domain cluster: representative
CATH (23)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2wdqC00 1.20.1300.10 Mainly Alpha › Up-down Bundle › 3 helical TM bundles of succinate and fumarate reductases › Fumarate reductase/succinate dehydrogenase, transmembrane subunit 0.79 67.0 5.09e-01 94.3% 47.1%
4b1bA00 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.78 67.0 3.91e-01 96.2% 20.4%
4dyqA01 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.77 57.0 4.50e-01 83.0% 39.8%
2yfqB01 1.10.8.1210 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › 0.77 46.0 4.70e-01 96.2% 61.5%
1z0jB00 4.10.860.20 Few Secondary Structures › Irregular › DNA Excision Repair, Uvrb; Chain A › Rabenosyn, Rab binding domain 0.74 52.0 5.30e-01 73.6% 84.3%
4b6xA00 1.20.58.90 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.73 53.0 4.84e-01 77.4% 87.0%
4bpxD00 1.20.930.80 Mainly Alpha › Up-down Bundle › Transcription Elongation Factor S-II; Chain A › 0.70 58.0 3.88e-01 94.3% 47.9%
2qf9A01 1.20.1260.10 Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle 0.68 57.0 4.01e-01 90.6% 35.9%
3n2oA03 1.20.58.930 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.68 54.0 4.38e-01 84.9% 61.5%
3dkqA02 4.10.860.20 Few Secondary Structures › Irregular › DNA Excision Repair, Uvrb; Chain A › Rabenosyn, Rab binding domain 0.67 42.0 4.46e-01 73.6% 72.3%
3n5lA03 1.20.58.90 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.66 52.0 5.08e-01 86.8% 87.7%
1oaiA00 1.10.8.10 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Ubiquitin-associated (UBA) domain 0.65 45.0 4.39e-01 100.0% 66.1%
2o5rA05 1.10.10.350 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › 0.65 44.0 3.77e-01 71.7% 42.4%
1vzsA01 1.10.246.110 Mainly Alpha › Orthogonal Bundle › Serum Albumin; Chain A, Domain 1 › Mitochondrial ATP synthase-coupling factor 6 0.64 55.0 5.23e-01 98.1% 84.1%
2xzmO02 1.10.287.10 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › S15/NS1, RNA-binding 0.63 53.0 4.81e-01 92.5% 77.1%
2hepA00 1.10.287.540 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin 0.62 41.0 4.49e-01 77.4% 85.7%
2p11A02 1.10.286.50 Mainly Alpha › Orthogonal Bundle › GTP Cyclohydrolase I; Chain A, domain 1 › 0.62 53.0 4.83e-01 100.0% 100.0%
2ld7B00 1.20.1160.11 Mainly Alpha › Up-down Bundle › Paired amphipathic helix 2 (pah2 repeat) › Paired amphipathic helix 0.61 40.0 3.63e-01 81.1% 46.7%
2bduA02 1.10.150.340 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Pyrimidine 5'-nucleotidase (UMPH-1), N-terminal domain 0.61 53.0 4.81e-01 100.0% 91.9%
4fqnC00 1.20.1160.20 Mainly Alpha › Up-down Bundle › Paired amphipathic helix 2 (pah2 repeat) › 0.61 42.0 3.67e-01 77.4% 45.9%
2yevA02 1.10.287.70 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.59 45.0 4.07e-01 84.9% 59.5%
5dukB00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.57 37.0 3.49e-01 98.1% 52.2%
2di0A01 1.10.8.10 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Ubiquitin-associated (UBA) domain 0.54 33.0 3.46e-01 94.3% 67.4%
ECOD (14)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3283655 3812.1.1.0 ↗ alpha bundles › Type III secretion protein YscE › Type III secretion protein YscE › Type III secretion protein YscE 0.76 55.0 5.73e-01 77.4% 88.0%
3457711 3846.1.1.0 ↗ alpha bundles › IcmR › IcmR › IcmR 0.76 61.0 6.12e-01 90.6% 94.5%
3451532 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.73 47.0 4.54e-01 86.8% 58.3%
4648077 2006.1.6.38 ↗ a/b three-layered sandwiches › HAD domain-like › HAD domain-related › vWA-like › DUF444 0.72 50.0 3.09e-01 83.0% 13.8%
4934293 4993.1.1.0 ↗ extended segments › Glu-tRNAGln amidotransferase C subunit › Glu-tRNAGln amidotransferase C subunit › Glu-tRNAGln amidotransferase C subunit 0.70 53.0 4.59e-01 81.1% 57.5%
3711112 4198.1.1.0 ↗ alpha arrays › TerB-like › TerB-like › TerB-like 0.67 54.0 3.88e-01 86.8% 80.0%
4976411 2004.1.1.0 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.67 55.0 3.17e-01 90.6% 50.4%
4513812 3922.1.1.0 ↗ alpha bundles › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3 0.65 52.0 4.60e-01 86.8% 64.0%
3579011 601.25.1.3 ↗ alpha bundles › Four-helical up-and-down bundle › TrmE connector domain › TrmE connector domain › TrmE_N 0.64 52.0 3.43e-01 88.7% 38.1%
3472546 4274.1.1.0 ↗ extended segments › Transmembrane helices in MalF N-terminal region › Transmembrane helices in MalF N-terminal region › Transmembrane helices in MalF N-terminal region 0.62 48.0 4.33e-01 86.8% 63.7%
4983939 5059.1.1.1 ↗ alpha bundles › Drug/Metabolite transporter › Drug/Metabolite transporter › Drug/Metabolite transporter › EamA 0.62 52.0 3.80e-01 92.5% 87.6%
5061885 298.2.1.0 ↗ a+b two layers › FwdE/GAPDH domain-like › FwdE-like › FwdE-like 0.60 48.0 3.21e-01 88.7% 28.6%
4971101 301.6.1.0 ↗ a+b three layers › Bacillus chorismate mutase-like › Tubulin C-terminal domain-like › Tubulin C-terminal domain-like 0.58 48.0 3.39e-01 94.3% 66.3%
3264735 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.56 45.0 4.48e-01 88.7% 83.6%