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hypothetical_protein_IM014_gp133

Euk-Vir

African_swine_fever_virus

hypothetical_protein_IM014_gp133__YP_009927223__African_swine_fever_virus__10497

Identity

Accession:: YP_009927223 ↗
Protein ID:: hypothetical_protein_IM014_gp133
Kingdom:: euk

Quality

71.2 mean pLDDT

Taxonomy

Bamfordvirae› Nucleocytoviricota› Pokkesviricetes› Asfuvirales› Asfarviridae› Asfivirus› African_swine_fever_virus

TaxID: 10497

Cluster

View cluster (32 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 663-828

PDB

Domain cluster: rep: DNA-directed_RNA_polymerase_147_kDa_polypeptide__YP_009329703__BeAn_58058_virus__67082__D598-725

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF05000.23 best	RNA_pol_Rpb1_4	57.1	2.20e-15	65.7%	92.5%

D2 high residues 897-1042

PDB

D3 high residues 1131-1270

PDB

Domain cluster: rep: NP1450L__YP_009703155__African_swine_fever_virus__10497__D1120-1260

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF04990.18 best	RNA_pol_Rpb1_7	30.2	5.80e-07	89.3%	78.7%

D4 medium residues 25-138_197-285

PDB

Domain cluster: rep: putative_RNA_polymerase_largest_subunit__YP_009001703__Anomala_cuprea_entomopoxvirus__62099__D13-74_212-273

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF04997.18 best	RNA_pol_Rpb1_1	60.3	2.90e-16	57.1%	30.8%

D5 medium residues 329-360_414-508

PDB

Domain cluster: rep: DNA-dependent_RNA_polymerase_subunit_rpo147__YP_232980__Vaccinia_virus__10245__D277-311_370-443

Pfam (2)

Accession	Name	Score	E-value	Q cov	HMM cov
PF00623.26 best	RNA_pol_Rpb1_2	111.5	7.20e-32	65.3%	47.0%
PF00623.26	RNA_pol_Rpb1_2	26.6	9.30e-06	26.0%	19.3%

D6 medium residues 361-413

PDB

Domain cluster: rep: DNA-directed_RNA_polymerase_subunit_A__YP_009352525__Kaumoebavirus_Viruses.__X__D343-402

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF00623.26 best	RNA_pol_Rpb1_2	31.5	2.80e-07	100.0%	31.3%

CATH (6)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
4c2mA04	3.30.1490.180	Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › RNA polymerase ii	0.83	76.0	6.62e-01	100.0%	88.3%
2id5A01	3.80.10.10	Alpha Beta › Alpha-Beta Horseshoe › Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) › Ribonuclease Inhibitor	0.57	45.0	2.81e-01	96.2%	20.4%
6rxpA02	3.30.1600.10	Alpha Beta › 2-Layer Sandwich › SIR2/SIRT2 'Small Domain' › SIR2/SIRT2 'Small Domain'	0.54	43.0	3.75e-01	100.0%	70.5%
2xn2A03	2.60.40.1180	Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II	0.53	42.0	3.51e-01	88.7%	96.9%
1iq8A03	3.10.450.90	Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › ArcTGT, C2 domain	0.52	33.0	2.99e-01	77.4%	44.6%
1w4sA00	2.30.30.490	Mainly Beta › Roll › SH3 type barrels. › Bromo adjacent homology (BAH) domain	0.52	36.0	2.77e-01	77.4%	76.7%

ECOD (14)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
4861729	1.1.2.2 ↗	beta barrels › cradle loop barrel › RIFT-related › double psi › RNA_pol_Rpb1_2	0.99	75.0	8.36e-01	79.2%	97.7%
3992139	275.1.1.1 ↗	a+b two layers › MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase › MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase › MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase › RNA_pol_Rpb1_2	0.91	71.0	6.08e-01	83.0%	55.0%
3556111	275.1.1.1 ↗	a+b two layers › MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase › MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase › MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase › RNA_pol_Rpb1_2	0.89	82.0	7.62e-01	100.0%	83.1%
3184992	275.1.1.1 ↗	a+b two layers › MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase › MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase › MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase › RNA_pol_Rpb1_2	0.89	81.0	7.55e-01	100.0%	87.7%
4943460	1.1.2.2 ↗	beta barrels › cradle loop barrel › RIFT-related › double psi › RNA_pol_Rpb1_2	0.88	81.0	5.40e-01	100.0%	30.3%
3733629	4951.1.1.1 ↗	alpha arrays › inserted helical subdomain in bacterial RNA-polymerase beta-prime subunit › inserted helical subdomain in bacterial RNA-polymerase beta-prime subunit › inserted helical subdomain in bacterial RNA-polymerase beta-prime subunit › RNA_pol_Rpb1_2	0.87	80.0	7.45e-01	100.0%	83.1%
5049545	275.1.1.1 ↗	a+b two layers › MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase › MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase › MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase › RNA_pol_Rpb1_2	0.87	80.0	7.63e-01	100.0%	93.3%
3600674	275.1.1.0 ↗	a+b two layers › MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase › MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase › MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase	0.85	77.0	7.60e-01	100.0%	94.5%
3417262	275.1.1.1 ↗	a+b two layers › MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase › MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase › MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase › RNA_pol_Rpb1_2	0.82	75.0	6.63e-01	100.0%	84.0%
3589439	1179.1.1.1 ↗	alpha complex topology › TelC toxin domain › TelC toxin domain › TelC toxin domain › YkzU	0.54	44.0	2.92e-01	98.1%	68.5%
3275821	304.24.1.0 ↗	a+b two layers › Alpha-beta plaits › EF-G C-terminal domain-like › EF-G C-terminal domain-like	0.51	35.0	3.18e-01	100.0%	50.0%
4296494	304.48.1.1 ↗	a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › RVT_1	0.51	38.0	2.44e-01	84.9%	40.3%
4943445	304.24.1.0 ↗	a+b two layers › Alpha-beta plaits › EF-G C-terminal domain-like › EF-G C-terminal domain-like	0.51	33.0	3.11e-01	100.0%	49.3%
3242909	209.1.1.1 ↗	a+b complex topology › C-type lectin-like › C-type lectin-like › C-type lectin-like › Lectin_C	0.50	39.0	3.13e-01	92.5%	60.0%

D7 medium residues 511-657

PDB

Domain cluster: rep: putative_DNA_directed_RNA_polymerase_largest_subunit__YP_009052394__Aureococcus_anophagefferens_virus__1474867__D487-612

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF04983.24 best	RNA_pol_Rpb1_3	92.1	4.90e-26	100.0%	84.6%

D8 medium residues 1099-1130_1271-1327

PDB

Domain cluster: rep: RNA_polymerase_subunit_1__YP_009702346__African_swine_fever_virus__10497__D1086-1119_1266-1317