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hypothetical_protein_KM509_gp027

Euk-Vir

Shrimp_hemocyte_iridescent_virus

hypothetical_protein_KM509_gp027__YP_010084779__Shrimp_hemocyte_iridescent_virus__2039780

Identity

Accession:
YP_010084779 ↗
Protein ID:
hypothetical_protein_KM509_gp027
Kingdom:
euk

Quality

72.3 mean pLDDT

Taxonomy

Bamfordvirae› Nucleocytoviricota› Megaviricetes› Pimascovirales› Iridoviridae› Decapodiridovirus› Shrimp_hemocyte_iridescent_virus

TaxID: 2039780

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 39-94
PDB
Domain cluster: representative
CATH (38)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1xdxA01 3.30.1140.40 Alpha Beta › 2-Layer Sandwich › Ribosomal protein S3 C-terminal domain › Tctex-1 0.78 58.0 4.78e-01 100.0% 45.0%
2w0gA00 1.20.58.610 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Cdc37, Hsp90 binding domain 0.73 63.0 4.79e-01 96.4% 56.6%
1t33A02 1.10.357.10 Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 0.72 63.0 4.59e-01 100.0% 82.9%
1j78A05 1.10.246.10 Mainly Alpha › Orthogonal Bundle › Serum Albumin; Chain A, Domain 1 › 0.72 53.0 5.22e-01 83.9% 75.0%
2e62A01 6.10.140.420 Special › Helix non-globular › Helix Hairpins › 0.70 54.0 5.51e-01 92.9% 94.2%
2x2vA00 1.20.20.10 Mainly Alpha › Up-down Bundle › F1FO ATP Synthase › F1F0 ATP synthase subunit C 0.68 51.0 4.85e-01 100.0% 67.6%
1ic8A01 1.10.260.40 Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains 0.67 57.0 4.88e-01 100.0% 98.9%
1mzgB00 3.90.1010.10 Alpha Beta › Alpha-Beta Complex › Sufe protein. Chain: A › 0.66 48.0 3.55e-01 82.1% 30.1%
5dukB00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.66 40.0 3.78e-01 82.1% 49.3%
1v4aA03 1.20.120.330 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Nucleotidyltransferases domain 2 0.66 59.0 4.26e-01 100.0% 89.5%
2ekgB01 6.10.250.3270 Special › Helix non-globular › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › 0.65 54.0 5.50e-01 92.9% 96.4%
3rguB00 1.20.5.420 Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › Immunoglobulin FC, subunit C 0.64 49.0 4.16e-01 80.4% 89.7%
3dd9D02 6.10.140.2060 Special › Helix non-globular › Helix Hairpins › 0.64 44.0 4.83e-01 82.1% 100.0%
6vq6G02 1.20.1460.10 Mainly Alpha › Up-down Bundle › subunit c (vma5p) of the yeast v-atpase, domain 2 › subunit c (vma5p) of the yeast v-atpase, domain 2 0.64 53.0 3.67e-01 91.1% 41.3%
2q00B00 1.20.120.330 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Nucleotidyltransferases domain 2 0.63 53.0 4.20e-01 96.4% 100.0%
6ynwH01 1.20.20.10 Mainly Alpha › Up-down Bundle › F1FO ATP Synthase › F1F0 ATP synthase subunit C 0.62 54.0 4.91e-01 100.0% 74.3%
3bbzA00 1.10.8.10 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Ubiquitin-associated (UBA) domain 0.61 39.0 4.24e-01 82.1% 77.1%
3tixB03 3.40.50.11490 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.61 42.0 3.13e-01 80.4% 27.5%
4heoA00 1.10.8.10 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Ubiquitin-associated (UBA) domain 0.61 42.0 4.30e-01 100.0% 74.5%
2ic6A00 1.20.58.90 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.60 50.0 4.60e-01 89.3% 88.7%
2etnB01 1.10.287.180 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Transcription elongation factor, GreA/GreB, N-terminal domain 0.60 46.0 4.12e-01 82.1% 64.5%
1xb2B01 1.10.8.10 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Ubiquitin-associated (UBA) domain 0.59 41.0 4.06e-01 80.4% 70.0%
4i9oA00 1.10.246.20 Mainly Alpha › Orthogonal Bundle › Serum Albumin; Chain A, Domain 1 › Coactivator CBP, KIX domain 0.59 49.0 4.50e-01 98.2% 70.5%
2kw6A00 6.10.140.1300 Special › Helix non-globular › Helix Hairpins › 0.59 48.0 4.58e-01 87.5% 76.9%
1z9hA03 1.20.1050.10 Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › 0.58 44.0 3.39e-01 89.3% 33.8%
4b6xA00 1.20.58.90 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.58 48.0 4.46e-01 89.3% 100.0%
4aflA00 6.10.140.1740 Special › Helix non-globular › Helix Hairpins › 0.57 51.0 4.13e-01 96.4% 75.5%
1u84A00 1.10.340.20 Mainly Alpha › Orthogonal Bundle › Endonuclease III; domain 1 › Apc36109-like domain 0.57 49.0 4.41e-01 100.0% 100.0%
3r84B00 6.10.280.160 Special › Helix non-globular › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Mediator of RNA polymerase II transcription subunit 22 0.56 51.0 4.49e-01 100.0% 70.0%
2kp8A00 1.20.5.170 Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › 0.56 50.0 4.55e-01 98.2% 77.8%
2rklF00 1.20.5.420 Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › Immunoglobulin FC, subunit C 0.56 41.0 4.22e-01 78.6% 100.0%
4e4eA01 1.10.287.990 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Fe,Mn superoxide dismutase (SOD) domain 0.55 42.0 3.89e-01 96.4% 64.8%
4v1gA00 1.20.20.10 Mainly Alpha › Up-down Bundle › F1FO ATP Synthase › F1F0 ATP synthase subunit C 0.55 47.0 4.14e-01 100.0% 67.1%
2pkeA02 1.10.150.240 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 0.55 46.0 4.16e-01 96.4% 100.0%
4nb5B02 1.10.287.160 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › HR1 repeat 0.54 46.0 4.40e-01 92.9% 90.6%
6tkvA01 1.10.287.1060 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › ESAT-6-like 0.54 47.0 4.41e-01 94.6% 92.6%
4errB00 1.20.58.1190 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.53 45.0 3.99e-01 96.4% 96.4%
2mpnA00 6.10.140.1340 Special › Helix non-globular › Helix Hairpins › 0.53 46.0 4.38e-01 100.0% 82.4%
ECOD (38)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4964132 5058.1.1.0 ↗ alpha bundles › Mechanosensitive channel protein MscS (YggB), transmembrane region › Mechanosensitive channel protein MscS (YggB), transmembrane region › Mechanosensitive channel protein MscS (YggB), transmembrane region 0.74 64.0 5.23e-01 100.0% 52.4%
3602986 5058.1.1.2 ↗ alpha bundles › Mechanosensitive channel protein MscS (YggB), transmembrane region › Mechanosensitive channel protein MscS (YggB), transmembrane region › Mechanosensitive channel protein MscS (YggB), transmembrane region › MS_channel_1st 0.74 62.0 5.21e-01 100.0% 55.8%
1790834 3086.1.1.1 ↗ alpha bundles › Diacylglycerol kinase (DAGK) › Diacylglycerol kinase (DAGK) › Diacylglycerol kinase (DAGK) › DAGK_prokar 0.73 47.0 4.08e-01 75.0% 44.0%
3847053 192.15.1.0 ↗ alpha bundles › Long alpha-hairpin › Endosomal sorting complex assembly domains › Endosomal sorting complex assembly domains 0.73 49.0 4.42e-01 75.0% 52.0%
3721541 3291.1.1.0 ↗ alpha bundles › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related 0.73 62.0 5.06e-01 100.0% 52.0%
3862550 3826.1.1.19 ↗ alpha bundles › Copper-sensitive operon repressor (CsoR) › Copper-sensitive operon repressor (CsoR) › Copper-sensitive operon repressor (CsoR) › PH_19 0.70 50.0 4.75e-01 75.0% 70.8%
3491670 614.1.1.0 ↗ alpha duplicates or obligate multimers › L27 domain › L27 domain › L27 domain 0.69 51.0 5.16e-01 89.3% 80.0%
5047182 605.1.1.0 ↗ alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase 0.68 57.0 5.48e-01 100.0% 81.5%
3691750 376.1.1.8 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › U-box 0.68 61.0 4.43e-01 100.0% 39.6%
4998530 2498.1.1.10 ↗ mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" › Peptidase_M48 0.68 52.0 3.33e-01 83.9% 57.4%
3781350 5041.1.1.20 ↗ extended segments › F1F0 ATP synthase subunit C › F1F0 ATP synthase subunit C › F1F0 ATP synthase subunit C › PF26669 0.68 56.0 4.43e-01 100.0% 44.2%
4092142 3455.1.1.0 ↗ alpha arrays › WY-domain in RXLR effectors › WY-domain in RXLR effectors › WY-domain in RXLR effectors 0.68 46.0 4.62e-01 89.3% 69.0%
4459850 2006.1.1.1 ↗ a/b three-layered sandwiches › HAD domain-like › HAD domain-related › HAD-like › Hydrolase 0.67 57.0 3.79e-01 100.0% 35.2%
3743245 223.2.1.20 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like › Fuz_longin_1 0.66 45.0 3.34e-01 85.7% 28.9%
3973208 605.1.1.0 ↗ alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase 0.64 54.0 5.00e-01 98.2% 77.3%
3292409 101.35.1.23 ↗ alpha arrays › HTH › DNA repair regulatory protein RecX › DNA repair regulatory protein RecX › Ovate 0.64 44.0 4.36e-01 91.1% 68.3%
4432476 2006.1.1.1 ↗ a/b three-layered sandwiches › HAD domain-like › HAD domain-related › HAD-like › Hydrolase 0.63 52.0 3.41e-01 100.0% 30.4%
3302219 148.1.3.0 ↗ alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain 0.63 52.0 4.45e-01 92.9% 62.2%
9879 2006.1.1.18 ↗ a/b three-layered sandwiches › HAD domain-like › HAD domain-related › HAD-like › HAD_2 0.63 52.0 3.47e-01 100.0% 34.2%
3767940 192.15.1.43 ↗ alpha bundles › Long alpha-hairpin › Endosomal sorting complex assembly domains › Endosomal sorting complex assembly domains › PH_19 0.61 53.0 4.60e-01 92.9% 93.8%
3311177 605.4.1.0 ↗ alpha duplicates or obligate multimers › ROP-like › ROP protein › ROP protein 0.59 45.0 4.24e-01 85.7% 67.1%
4201121 192.7.1.0 ↗ alpha bundles › Long alpha-hairpin › tRNA-binding arm › tRNA-binding arm 0.59 45.0 4.44e-01 82.1% 88.3%
3595968 605.2.1.0 ↗ alpha duplicates or obligate multimers › ROP-like › Hypothetical protein D-63 › Hypothetical protein D-63 0.58 49.0 4.27e-01 89.3% 78.8%
3343082 3981.1.1.2 ↗ alpha bundles › Mitochondrial distribution and morphology protein 35 › Mitochondrial distribution and morphology protein 35 › Mitochondrial distribution and morphology protein 35 › PANTS-like 0.58 52.0 4.98e-01 100.0% 98.5%
3703063 604.3.1.0 ↗ alpha bundles › Spectrin repeat-like › BAG domain › BAG domain 0.57 52.0 4.31e-01 100.0% 62.1%
4784164 603.1.1.0 ↗ alpha bundles › STAT-like › t-snare proteins › t-snare proteins 0.57 51.0 4.70e-01 96.4% 95.7%
1890010 1106.1.1.1 ↗ alpha arrays › RDS3 complex subunit 10 › RDS3 complex subunit 10 › RDS3 complex subunit 10 › SF3b10 0.56 43.0 3.87e-01 89.3% 58.3%
5016327 605.1.1.2 ↗ alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase › H-kinase_dim 0.55 49.0 4.55e-01 98.2% 78.6%
4553665 223.2.1.20 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like › Fuz_longin_1 0.55 42.0 3.12e-01 91.1% 94.9%
3731064 633.6.1.0 ↗ alpha bundles › Bromodomain-like › Acyl-CoA dehydrogenase C-terminal domain-like › Acyl-CoA dehydrogenase C-terminal domain-like 0.54 50.0 3.92e-01 100.0% 63.6%
4129922 192.7.1.2 ↗ alpha bundles › Long alpha-hairpin › tRNA-binding arm › tRNA-binding arm › Seryl_tRNA_N 0.54 49.0 3.99e-01 100.0% 84.0%
3705329 603.1.1.0 ↗ alpha bundles › STAT-like › t-snare proteins › t-snare proteins 0.53 42.0 3.44e-01 89.3% 47.0%
4784166 192.29.1.0 ↗ alpha bundles › Long alpha-hairpin › bMERB domain (bivalent Mical/EHBP Rab binding) › bMERB domain (bivalent Mical/EHBP Rab binding) 0.53 47.0 4.36e-01 96.4% 95.7%
5018636 605.1.1.3 ↗ alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase › HisKA_2 0.53 49.0 4.49e-01 100.0% 84.3%
3518320 604.1.1.0 ↗ alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat 0.53 46.0 3.74e-01 100.0% 53.6%
4054285 5.1.4.139 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40_2 0.52 43.0 2.56e-01 96.4% 73.8%
4116112 192.8.1.353 ↗ alpha bundles › Long alpha-hairpin › Eukaryotic DNA topoisomerase I, dispensable insert domain › Eukaryotic DNA topoisomerase I, dispensable insert domain › Med10 0.52 46.0 4.11e-01 100.0% 73.8%
3641527 192.8.1.353 ↗ alpha bundles › Long alpha-hairpin › Eukaryotic DNA topoisomerase I, dispensable insert domain › Eukaryotic DNA topoisomerase I, dispensable insert domain › Med10 0.51 47.0 4.11e-01 100.0% 72.5%