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hypothetical_protein_KM509_gp167

Euk-Vir

Shrimp_hemocyte_iridescent_virus

hypothetical_protein_KM509_gp167__YP_010084919__Shrimp_hemocyte_iridescent_virus__2039780

Identity

Accession:
YP_010084919 ↗
Protein ID:
hypothetical_protein_KM509_gp167
Kingdom:
euk

Quality

75.1 mean pLDDT

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 147-198_231-280
PDB
Domain cluster: representative
CATH (40)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1aisA02 3.30.310.10 Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › TATA-Binding Protein 0.79 58.0 6.29e-01 97.1% 89.7%
1qnaA01 3.30.310.10 Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › TATA-Binding Protein 0.79 60.0 6.30e-01 100.0% 87.1%
2zylA02 3.90.380.10 Alpha Beta › Alpha-Beta Complex › Naphthalene 1,2-dioxygenase Alpha Subunit; Chain A, domain 1 › Naphthalene 1,2-dioxygenase Alpha Subunit; Chain A, domain 1 0.73 67.0 5.17e-01 99.0% 71.0%
2mj7A00 3.30.310.10 Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › TATA-Binding Protein 0.70 61.0 5.50e-01 96.1% 68.8%
4i8oA02 3.30.160.690 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Bacterial toxin RNase RnlA/LsoA, N repeated domain 0.69 55.0 5.82e-01 99.0% 96.7%
3tfzB00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.68 61.0 5.24e-01 100.0% 95.2%
2d4rA00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.66 58.0 5.22e-01 100.0% 99.3%
2kf2A00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.66 59.0 5.01e-01 100.0% 87.4%
2zzeA04 3.30.980.10 Alpha Beta › 2-Layer Sandwich › Threonyl-tRNA Synthetase; Chain A, domain 2 › Threonyl-trna Synthetase; Chain A, domain 2 0.64 41.0 4.25e-01 90.2% 68.4%
1pvtA00 3.40.225.10 Alpha Beta › 3-Layer(aba) Sandwich › L-fuculose-1-phosphate Aldolase › Class II aldolase/adducin N-terminal domain 0.61 56.0 4.27e-01 100.0% 44.8%
1vmeB01 3.60.15.10 Alpha Beta › 4-Layer Sandwich › Metallo-beta-lactamase; Chain A › Ribonuclease Z/Hydroxyacylglutathione hydrolase-like 0.61 44.0 3.29e-01 74.5% 31.1%
1b4bA00 3.30.1360.40 Alpha Beta › 2-Layer Sandwich › Gyrase A; domain 2 › 0.61 36.0 4.11e-01 94.1% 83.1%
2ebkA00 3.10.110.10 Alpha Beta › Roll › Ubiquitin Conjugating Enzyme › Ubiquitin Conjugating Enzyme 0.60 46.0 4.31e-01 81.4% 79.7%
1t17A00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.60 53.0 4.72e-01 100.0% 98.0%
3os7A00 2.70.98.10 Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › 0.59 45.0 3.14e-01 80.4% 54.9%
2jhnA01 3.30.310.20 Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › DNA-3-methyladenine glycosylase AlkA, N-terminal domain 0.59 53.0 5.13e-01 99.0% 92.9%
4fekB00 3.60.15.10 Alpha Beta › 4-Layer Sandwich › Metallo-beta-lactamase; Chain A › Ribonuclease Z/Hydroxyacylglutathione hydrolase-like 0.59 41.0 3.12e-01 72.5% 30.2%
3eyrA00 3.15.10.40 Alpha Beta › Super Roll › Bactericidal permeability-increasing protein; domain 1 › Uncharacterised protein PF07273 family, DUF1439 0.58 46.0 3.98e-01 88.2% 94.1%
1v4pC01 3.30.980.10 Alpha Beta › 2-Layer Sandwich › Threonyl-tRNA Synthetase; Chain A, domain 2 › Threonyl-trna Synthetase; Chain A, domain 2 0.58 41.0 4.03e-01 90.2% 69.4%
3natA01 3.40.50.11250 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Protein of unknown function DUF3013 0.57 46.0 4.10e-01 86.3% 96.6%
2yqrA01 3.30.1370.10 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › K Homology domain, type 1 0.57 49.0 4.89e-01 100.0% 91.3%
4i99A00 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.57 50.0 3.52e-01 98.0% 32.6%
3pfeA01 3.40.630.10 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Zn peptidases 0.56 42.0 3.06e-01 79.4% 77.0%
2zfzD00 3.30.1360.40 Alpha Beta › 2-Layer Sandwich › Gyrase A; domain 2 › 0.56 34.0 3.75e-01 94.1% 77.2%
3mwxA00 2.70.98.10 Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › 0.55 45.0 3.19e-01 89.2% 49.7%
6qp9B01 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.54 39.0 2.57e-01 76.5% 45.1%
4jmdA00 2.40.400.10 Mainly Beta › Beta Barrel › Acetoacetate decarboxylase-like › Acetoacetate decarboxylase-like 0.53 40.0 3.02e-01 80.4% 84.8%
4htgA03 3.30.160.40 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Porphobilinogen deaminase, C-terminal domain 0.52 37.0 4.11e-01 74.5% 98.7%
6zepA01 3.40.630.10 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Zn peptidases 0.52 42.0 2.96e-01 87.3% 86.8%
3zqmA00 6.10.140.2160 Special › Helix non-globular › Helix Hairpins › 0.52 28.0 3.44e-01 78.4% 86.4%
2byoA00 2.50.20.20 Mainly Beta › Clam › outer membrane lipoprotein receptor (LolB), chain A › 0.52 39.0 3.23e-01 79.4% 84.2%
3t1oA00 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.52 45.0 3.71e-01 98.0% 89.6%
2qi2A01 2.30.30.870 Mainly Beta › Roll › SH3 type barrels. › Pelota, domain A 0.51 40.0 4.06e-01 94.1% 84.6%
3rbyA01 2.40.128.320 Mainly Beta › Beta Barrel › Lipocalin › Protein HRI1, N-terminal domain 0.51 40.0 3.61e-01 86.3% 95.3%
3pgbA03 3.10.450.40 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.51 36.0 3.48e-01 73.5% 94.8%
3obyA01 2.30.30.870 Mainly Beta › Roll › SH3 type barrels. › Pelota, domain A 0.51 40.0 3.93e-01 94.1% 79.8%
3kl7A00 3.60.15.10 Alpha Beta › 4-Layer Sandwich › Metallo-beta-lactamase; Chain A › Ribonuclease Z/Hydroxyacylglutathione hydrolase-like 0.51 41.0 3.25e-01 88.2% 70.9%
4nzrM02 2.160.20.180 Mainly Beta › 3 Solenoid › Pectate Lyase C-like › 0.51 38.0 3.20e-01 81.4% 70.1%
5h66A00 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.50 37.0 3.06e-01 77.5% 61.0%
4qjvA01 3.30.1360.10 Alpha Beta › 2-Layer Sandwich › Gyrase A; domain 2 › RNA polymerase, RBP11-like subunit 0.50 34.0 3.64e-01 99.0% 80.9%
ECOD (57)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5045767 331.1.1.0 a+b two layers › TBP-like › TATA-box binding protein-like › TATA-box binding protein-like 0.89 61.0 6.53e-01 92.2% 80.0%
5002867 331.1.1.0 a+b two layers › TBP-like › TATA-box binding protein-like › TATA-box binding protein-like 0.86 62.0 6.64e-01 96.1% 84.4%
5069568 331.1.1.0 a+b two layers › TBP-like › TATA-box binding protein-like › TATA-box binding protein-like 0.85 62.0 6.63e-01 95.1% 85.6%
4944335 331.1.1.0 a+b two layers › TBP-like › TATA-box binding protein-like › TATA-box binding protein-like 0.82 63.0 6.55e-01 98.0% 87.1%
5061708 331.1.1.0 a+b two layers › TBP-like › TATA-box binding protein-like › TATA-box binding protein-like 0.81 58.0 6.40e-01 96.1% 91.6%
3497442 331.1.1.1 a+b two layers › TBP-like › TATA-box binding protein-like › TATA-box binding protein-like › TBP 0.81 62.0 6.77e-01 100.0% 96.5%
4966809 331.1.1.0 a+b two layers › TBP-like › TATA-box binding protein-like › TATA-box binding protein-like 0.81 57.0 6.30e-01 95.1% 92.5%
5062306 331.1.1.0 a+b two layers › TBP-like › TATA-box binding protein-like › TATA-box binding protein-like 0.80 60.0 6.35e-01 97.1% 87.8%
4314842 331.1.1.0 a+b two layers › TBP-like › TATA-box binding protein-like › TATA-box binding protein-like 0.79 63.0 6.29e-01 98.0% 81.0%
3403222 331.1.1.1 a+b two layers › TBP-like › TATA-box binding protein-like › TATA-box binding protein-like › TBP 0.79 60.0 5.31e-01 100.0% 57.1%
3510576 331.1.1.1 a+b two layers › TBP-like › TATA-box binding protein-like › TATA-box binding protein-like › TBP 0.79 59.0 6.62e-01 98.0% 100.0%
4981525 331.1.1.0 a+b two layers › TBP-like › TATA-box binding protein-like › TATA-box binding protein-like 0.79 58.0 6.50e-01 99.0% 100.0%
3755055 331.1.1.12 a+b two layers › TBP-like › TATA-box binding protein-like › TATA-box binding protein-like › DUF155 0.78 63.0 5.68e-01 99.0% 63.7%
4023931 331.1.1.1 a+b two layers › TBP-like › TATA-box binding protein-like › TATA-box binding protein-like › TBP 0.78 63.0 6.72e-01 100.0% 97.8%
3601320 331.1.1.0 a+b two layers › TBP-like › TATA-box binding protein-like › TATA-box binding protein-like 0.77 68.0 6.89e-01 97.1% 96.0%
3413735 3435.1.1.6 a+b two layers › Recombination-associated protein rdgC › Recombination-associated protein rdgC › Recombination-associated protein rdgC › DUF155 0.77 64.0 5.50e-01 99.0% 58.1%
3499220 604.3.1.0 alpha bundles › Spectrin repeat-like › BAG domain › BAG domain 0.76 63.0 4.61e-01 99.0% 34.6%
3235731 604.3.1.11 alpha bundles › Spectrin repeat-like › BAG domain › BAG domain › DUF155 0.76 62.0 4.70e-01 99.0% 39.1%
3494489 331.9.1.12 a+b two layers › TBP-like › Subdomain of clathrin and coatomer appendage domain › Subdomain of clathrin and coatomer appendage domain › BBS2_pf 0.75 57.0 5.55e-01 96.1% 73.6%
4026594 331.9.1.2 a+b two layers › TBP-like › Subdomain of clathrin and coatomer appendage domain › Subdomain of clathrin and coatomer appendage domain › B2-adapt-app_C 0.73 64.0 6.09e-01 94.1% 83.1%
3739666 247.1.1.38 a+b four layers › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › CPSF73-100_C 0.71 57.0 5.99e-01 100.0% 95.6%
3270919 331.9.1.2 a+b two layers › TBP-like › Subdomain of clathrin and coatomer appendage domain › Subdomain of clathrin and coatomer appendage domain › B2-adapt-app_C 0.71 59.0 5.71e-01 92.2% 79.1%
4946323 3435.1.1.0 a+b two layers › Recombination-associated protein rdgC › Recombination-associated protein rdgC › Recombination-associated protein rdgC 0.71 65.0 6.22e-01 99.0% 99.1%
2755883 331.19.1.1 a+b two layers › TBP-like › Toxin RnlA N-terminal domains › Toxin RnlA N-terminal domains › RnlA_toxin 0.70 55.0 5.76e-01 99.0% 93.5%
4977467 331.3.1.0 a+b two layers › TBP-like › Bet v1-like › Bet v1-like 0.70 60.0 6.04e-01 95.1% 100.0%
4346967 331.2.1.8 a+b two layers › TBP-like › Phosphoglucomutase, C-terminal domain › Phosphoglucomutase, C-terminal domain › CPSF73-100_C 0.69 53.0 5.65e-01 98.0% 93.3%
4964235 3435.1.1.0 a+b two layers › Recombination-associated protein rdgC › Recombination-associated protein rdgC › Recombination-associated protein rdgC 0.69 61.0 4.54e-01 98.0% 53.1%
4929322 331.3.1.0 a+b two layers › TBP-like › Bet v1-like › Bet v1-like 0.69 62.0 6.26e-01 98.0% 100.0%
3801875 604.1.1.135 alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat › DUF155 0.68 58.0 4.22e-01 99.0% 36.1%
3591533 881.1.1.0 a+b three layers › Mog1p/PsbP-like › Mog1p/PsbP-like › Mog1p/PsbP-like 0.68 51.0 4.29e-01 79.4% 52.4%
3358939 604.3.1.11 alpha bundles › Spectrin repeat-like › BAG domain › BAG domain › DUF155 0.67 58.0 4.21e-01 99.0% 35.8%
3425427 4121.1.1.6 a+b three layers › CorA soluble domain-like › CorA soluble domain-like › CorA soluble domain-like › DUF155 0.66 55.0 4.11e-01 98.0% 36.5%
4027675 216.1.1.0 a+b two layers › UBC-like › UBC-like › UBC-like 0.65 51.0 4.50e-01 84.3% 85.9%
3589550 306.2.1.1 a+b two layers › Glucose permease domain IIB-like › arginine repressor C terminal domain-related › C-terminal domain of arginine repressor › Arg_repressor_C 0.62 37.0 4.06e-01 94.1% 73.8%
3182505 331.1.1.13 a+b two layers › TBP-like › TATA-box binding protein-like › TATA-box binding protein-like › CPSF73-100_C 0.62 55.0 5.63e-01 99.0% 100.0%
4383083 7579.1.1.244 a/b three-layered sandwiches › alpha/beta-Hydrolases › alpha/beta-Hydrolases › alpha/beta-Hydrolases › Peptidase_S37, Peptidase_S28 0.61 47.0 3.09e-01 81.4% 29.9%
4454164 306.2.1.1 a+b two layers › Glucose permease domain IIB-like › arginine repressor C terminal domain-related › C-terminal domain of arginine repressor › Arg_repressor_C 0.61 36.0 4.08e-01 94.1% 78.7%
4617415 306.2.1.1 a+b two layers › Glucose permease domain IIB-like › arginine repressor C terminal domain-related › C-terminal domain of arginine repressor › Arg_repressor_C 0.61 36.0 3.90e-01 95.1% 68.2%
4541886 306.2.1.1 a+b two layers › Glucose permease domain IIB-like › arginine repressor C terminal domain-related › C-terminal domain of arginine repressor › Arg_repressor_C 0.61 37.0 3.83e-01 95.1% 64.2%
4929992 873.1.1.20 a+b complex topology › H-NOX domain › H-NOX domain › H-NOX domain › DUF6125 0.61 41.0 3.56e-01 89.2% 44.4%
4035959 306.2.1.1 a+b two layers › Glucose permease domain IIB-like › arginine repressor C terminal domain-related › C-terminal domain of arginine repressor › Arg_repressor_C 0.60 36.0 3.95e-01 96.1% 71.8%
3668294 12.3.1.3 beta sandwiches › Glycosyl hydrolase domain-like › supersandwich › supersandwich › Aldose_epim 0.60 43.0 3.16e-01 75.5% 56.4%
4488718 306.2.1.1 a+b two layers › Glucose permease domain IIB-like › arginine repressor C terminal domain-related › C-terminal domain of arginine repressor › Arg_repressor_C 0.60 35.0 3.74e-01 91.2% 67.1%
4155203 306.2.1.1 a+b two layers › Glucose permease domain IIB-like › arginine repressor C terminal domain-related › C-terminal domain of arginine repressor › Arg_repressor_C 0.60 36.0 3.88e-01 95.1% 70.6%
4368618 306.2.1.1 a+b two layers › Glucose permease domain IIB-like › arginine repressor C terminal domain-related › C-terminal domain of arginine repressor › Arg_repressor_C 0.59 35.0 3.93e-01 92.2% 75.0%
4205065 306.2.1.1 a+b two layers › Glucose permease domain IIB-like › arginine repressor C terminal domain-related › C-terminal domain of arginine repressor › Arg_repressor_C 0.57 36.0 3.94e-01 95.1% 78.8%
3671608 304.8.1.0 a+b two layers › Alpha-beta plaits › ACT-like › ACT-like 0.57 40.0 3.91e-01 97.1% 66.4%
3586687 206.1.1.10 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Choline_kinase 0.57 42.0 3.33e-01 77.5% 55.7%
4052194 306.2.1.1 a+b two layers › Glucose permease domain IIB-like › arginine repressor C terminal domain-related › C-terminal domain of arginine repressor › Arg_repressor_C 0.56 35.0 3.76e-01 97.1% 74.1%
141014 12.3.1.3 beta sandwiches › Glycosyl hydrolase domain-like › supersandwich › supersandwich › Aldose_epim 0.54 45.0 3.14e-01 90.2% 49.4%
4973090 330.2.1.0 a+b two layers › dsRBD-like › Ribosome binding protein Y (YfiA homologue) › Ribosome binding protein Y (YfiA homologue) 0.54 38.0 3.93e-01 73.5% 90.0%
1678534 243.3.1.10 a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin › YPEB_PepSY1-2 0.54 38.0 4.05e-01 72.5% 88.4%
3600347 241.10.1.0 a+b two layers › Type III secretory system chaperone-like › GAS2 domain › GAS2 domain 0.53 40.0 3.95e-01 79.4% 93.6%
5083024 2484.1.1.0 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.52 47.0 3.08e-01 99.0% 67.4%
3391610 223.2.1.0 a+b three layers › Profilin-like › profilin-like › profilin-like 0.51 38.0 3.37e-01 78.4% 61.3%
3374083 304.8.1.45 a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › bHLH-TF_ACT-like_plant 0.51 37.0 4.04e-01 99.0% 92.9%
3747625 11.1.1.54 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › CBM_21 0.50 39.0 3.43e-01 86.3% 92.7%
D2 medium residues 1-55_76-146_199-230
PDB