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hypothetical_protein_KM620_gp136

Euk-Vir

Hyposidra_talaca_nucleopolyhedrovirus

hypothetical_protein_KM620_gp136__YP_010086403__Hyposidra_talaca_nucleopolyhedrovirus__1070315

Identity

Accession:
YP_010086403 ↗
Protein ID:
hypothetical_protein_KM620_gp136
Kingdom:
euk

Quality

80.1 mean pLDDT

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 94-174
PDB
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF27725.1 best SfNPV_sf27 50.1 4.60e-13 98.8% 48.0%
CATH (40)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
6e94A02 3.30.160.60 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Classic Zinc Finger 0.78 28.0 3.34e-01 90.1% 48.2%
2i8eA01 3.30.70.240 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.76 50.0 5.18e-01 91.4% 73.0%
2codA01 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.72 38.0 3.65e-01 100.0% 43.8%
1gmuA01 3.30.70.790 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › UreE, C-terminal domain 0.72 45.0 4.89e-01 92.6% 76.1%
1in0A01 3.30.70.860 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.70 48.0 5.13e-01 91.4% 82.9%
1x1fA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.65 38.0 3.08e-01 100.0% 31.5%
2dt9A01 3.30.70.260 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain 0.63 51.0 5.31e-01 100.0% 98.6%
3fm8D03 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.62 38.0 3.47e-01 100.0% 47.2%
1xmxA03 1.10.10.680 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Hypothetical protein VC1899 (Restriction endonuclease-like) 0.60 46.0 4.51e-01 93.8% 75.3%
1oltA02 1.10.10.920 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › 0.59 51.0 5.19e-01 100.0% 98.8%
3gv5B01 3.30.70.270 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Reverse transcriptase/Diguanylate cyclase domain 0.58 50.0 4.17e-01 91.4% 76.5%
3aawA02 3.30.2130.10 Alpha Beta › 2-Layer Sandwich › VC0802-like › VC0802-like 0.57 50.0 4.00e-01 100.0% 92.7%
2fnaA03 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.56 40.0 4.22e-01 88.9% 86.3%
3i3wA04 3.30.310.50 Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › Alpha-D-phosphohexomutase, C-terminal domain 0.56 45.0 4.64e-01 91.4% 94.8%
4ev0A02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.56 43.0 4.45e-01 97.5% 90.9%
4lowA00 3.30.1360.20 Alpha Beta › 2-Layer Sandwich › Gyrase A; domain 2 › Transcriptional coactivator/pterin dehydratase 0.55 48.0 4.83e-01 100.0% 97.6%
3nwsA01 2.40.50.800 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.55 44.0 3.74e-01 90.1% 70.9%
5nckA01 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.55 34.0 3.14e-01 100.0% 47.6%
4i2oA02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.55 44.0 4.49e-01 96.3% 91.3%
3dv8A02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.54 42.0 4.30e-01 97.5% 88.5%
1xc3A01 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.54 32.0 3.05e-01 100.0% 45.6%
6ui4A03 1.20.5.4820 Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › 0.54 44.0 4.34e-01 91.4% 88.4%
2fmyA02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.54 45.0 4.49e-01 96.3% 92.7%
2gauA02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.53 44.0 4.44e-01 97.5% 93.8%
2ebmA00 3.10.110.10 Alpha Beta › Roll › Ubiquitin Conjugating Enzyme › Ubiquitin Conjugating Enzyme 0.53 41.0 3.57e-01 98.8% 53.1%
3cdhA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.53 38.0 3.30e-01 88.9% 47.0%
4b8xA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.52 41.0 3.49e-01 93.8% 50.0%
5cvrA02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.52 45.0 4.45e-01 96.3% 95.2%
2p8tA02 3.30.1360.30 Alpha Beta › 2-Layer Sandwich › Gyrase A; domain 2 › GAD-like domain 0.52 45.0 4.11e-01 97.5% 95.4%
1bjaA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.52 37.0 3.55e-01 90.1% 64.2%
3fx3B02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.52 44.0 4.25e-01 97.5% 82.1%
5xyiK00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.52 42.0 4.11e-01 93.8% 81.1%
3hmuB01 3.90.1150.10 Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 0.52 44.0 3.43e-01 96.3% 48.7%
3e97A02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.52 44.0 4.50e-01 96.3% 98.7%
3b02A02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.52 42.0 4.18e-01 96.3% 87.1%
3d0sA02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.52 43.0 4.40e-01 96.3% 95.0%
2kuqA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.52 40.0 3.25e-01 82.7% 85.0%
3pieC05 2.170.260.40 Mainly Beta › Beta Complex › paz domain › 0.51 36.0 2.84e-01 72.8% 62.9%
5optn00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.51 42.0 4.11e-01 96.3% 84.9%
3r4iA02 6.10.140.960 Special › Helix non-globular › Helix Hairpins › 0.51 30.0 3.36e-01 86.4% 78.3%
ECOD (49)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3890749 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.77 41.0 3.92e-01 100.0% 46.7%
4033471 304.26.1.1 a+b two layers › Alpha-beta plaits › MTH1187/YkoF-like › MTH1187/YkoF-like › Thiamine_BP 0.75 54.0 5.10e-01 91.4% 64.2%
4977215 304.117.1.0 a+b two layers › Alpha-beta plaits › Ferredoxin-like domain in YebC › Ferredoxin-like domain in YebC 0.74 47.0 5.34e-01 88.9% 86.7%
5077049 304.24.1.0 a+b two layers › Alpha-beta plaits › EF-G C-terminal domain-like › EF-G C-terminal domain-like 0.71 50.0 5.18e-01 91.4% 78.7%
4407103 327.16.1.0 a+b two layers › Alpha-lytic protease prodomain-like › Ring-building motif II in type III secretion system › Ring-building motif II in type III secretion system 0.71 47.0 5.32e-01 90.1% 91.7%
5007807 304.26.1.1 a+b two layers › Alpha-beta plaits › MTH1187/YkoF-like › MTH1187/YkoF-like › Thiamine_BP 0.70 51.0 4.90e-01 91.4% 66.3%
408591 304.56.1.2 a+b two layers › Alpha-beta plaits › CRISPR associated protein Cas2-like › CRISPR associated protein Cas2-like › CRISPR_Cas2 0.69 48.0 4.43e-01 91.4% 56.9%
4508346 304.22.1.1 a+b two layers › Alpha-beta plaits › Urease metallochaperone UreE, C-terminal domain › Urease metallochaperone UreE, C-terminal domain › UreE_C 0.69 46.0 4.64e-01 92.6% 68.8%
4033553 304.26.1.1 a+b two layers › Alpha-beta plaits › MTH1187/YkoF-like › MTH1187/YkoF-like › Thiamine_BP 0.69 52.0 4.81e-01 91.4% 62.9%
4937564 3696.1.1.0 a+b two layers › DNA helicase UvsW N-terminal a+b domain-related › DNA helicase UvsW N-terminal a+b domain-related › DNA helicase UvsW N-terminal a+b domain-related 0.68 53.0 5.52e-01 100.0% 89.3%
4324589 304.128.1.0 a+b two layers › Alpha-beta plaits › ferredoxin-like domain in periplasmic region of MacB › ferredoxin-like domain in periplasmic region of MacB 0.67 45.0 4.94e-01 93.8% 87.7%
4227966 3016.1.1.0 a+b two layers › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases 0.64 45.0 4.86e-01 98.8% 92.3%
3285236 3016.1.1.0 a+b two layers › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases 0.63 44.0 4.90e-01 97.5% 100.0%
3842726 327.11.2.18 a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Eukaryotic type KH-domain (KH-domain type I) › DTX3L_KH-like 0.63 46.0 4.94e-01 91.4% 96.9%
4089899 304.120.1.6 a+b two layers › Alpha-beta plaits › Ferredoxin-like domain in ThiI › Ferredoxin-like domain in ThiI › ThiI_fer 0.62 47.0 4.87e-01 91.4% 89.3%
4153537 304.22.1.1 a+b two layers › Alpha-beta plaits › Urease metallochaperone UreE, C-terminal domain › Urease metallochaperone UreE, C-terminal domain › UreE_C 0.62 38.0 3.87e-01 87.7% 61.3%
4467547 3016.1.1.0 a+b two layers › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases 0.61 43.0 4.65e-01 98.8% 92.3%
4954582 3860.1.1.0 alpha bundles › Myosin VI lever arm › Myosin VI lever arm › Myosin VI lever arm 0.60 43.0 3.71e-01 90.1% 45.9%
3894383 327.11.2.0 a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Eukaryotic type KH-domain (KH-domain type I) 0.60 39.0 4.45e-01 85.2% 100.0%
3789102 304.8.1.10 a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › ACT_7 0.59 45.0 4.70e-01 100.0% 89.2%
5046209 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.59 52.0 5.18e-01 100.0% 97.6%
4501296 101.1.2.28 alpha arrays › HTH › HTH › winged helix domain › eIF-5_eIF-2B 0.59 46.0 4.64e-01 98.8% 87.5%
3936601 304.48.1.1 a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › RVT_1 0.57 50.0 3.47e-01 96.3% 78.5%
4217802 3016.1.1.0 a+b two layers › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases 0.57 47.0 4.54e-01 98.8% 78.9%
3927736 304.48.1.1 a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › RVT_1 0.57 51.0 3.65e-01 100.0% 75.8%
4978365 242.1.1.0 a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases 0.56 41.0 4.19e-01 91.4% 78.8%
5035477 242.1.1.0 a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases 0.56 41.0 4.04e-01 93.8% 72.9%
3965998 3016.1.1.0 a+b two layers › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases 0.56 41.0 4.51e-01 90.1% 100.0%
3731436 2485.1.1.0 a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like 0.55 47.0 3.93e-01 97.5% 73.3%
141178 2.1.1.75 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › CDC13_N 0.55 44.0 3.43e-01 90.1% 48.7%
1175670 101.1.2.142 alpha arrays › HTH › HTH › winged helix domain › HTH_Crp_2 0.54 42.0 4.27e-01 97.5% 86.3%
4144761 3016.1.1.0 a+b two layers › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases 0.54 45.0 4.34e-01 92.6% 83.9%
3275440 225.1.1.19 a+b two layers › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase-like › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase › SACS 0.54 38.0 2.79e-01 75.3% 80.8%
3226204 7558.1.1.0 a/b three-layered sandwiches › Glycerol-3-phosphate (1)-acyltransferase › Glycerol-3-phosphate (1)-acyltransferase › Glycerol-3-phosphate (1)-acyltransferase 0.54 47.0 4.51e-01 98.8% 92.6%
4997864 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.54 42.0 3.84e-01 98.8% 63.3%
3939861 304.48.1.1 a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › RVT_1 0.54 44.0 3.88e-01 91.4% 64.2%
4957247 101.1.2.30 alpha arrays › HTH › HTH › winged helix domain › TrmB 0.53 39.0 3.62e-01 90.1% 60.0%
3289939 2003.1.2.13 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain 0.53 43.0 3.16e-01 93.8% 68.8%
4991791 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.52 45.0 4.33e-01 98.8% 97.9%
3939429 2004.1.1.17 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Myosin_head 0.52 42.0 2.54e-01 91.4% 40.6%
3390907 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.52 42.0 4.22e-01 92.6% 88.1%
3403742 304.112.1.13 a+b two layers › Alpha-beta plaits › Argonaute, N-terminal domain › Argonaute, N-terminal domain › Piwi_N 0.52 37.0 3.76e-01 90.1% 77.5%
3857980 101.1.2.309 alpha arrays › HTH › HTH › winged helix domain › GPAT_C 0.52 43.0 3.99e-01 96.3% 89.9%
3526639 304.112.1.13 a+b two layers › Alpha-beta plaits › Argonaute, N-terminal domain › Argonaute, N-terminal domain › Piwi_N 0.51 38.0 3.91e-01 91.4% 85.3%
163606 101.1.2.142 alpha arrays › HTH › HTH › winged helix domain › HTH_Crp_2 0.51 42.0 4.29e-01 96.3% 93.8%
224405 101.1.2.142 alpha arrays › HTH › HTH › winged helix domain › HTH_Crp_2 0.51 42.0 4.27e-01 98.8% 93.9%
3712965 2004.1.1.17 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Myosin_head 0.51 41.0 2.66e-01 88.9% 22.8%
3361836 2003.1.2.9 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › GDI 0.50 30.0 2.38e-01 85.2% 26.3%
3781980 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.50 43.0 3.71e-01 100.0% 76.3%
D2 medium residues 27-92
PDB
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF27725.1 best SfNPV_sf27 47.8 2.40e-12 100.0% 35.0%