hypothetical_protein_KM622_gp046

Euk-Vir

Spodoptera_exempta_nucleopolyhedrovirus

hypothetical_protein_KM622_gp046__YP_010086464__Spodoptera_exempta_nucleopolyhedrovirus__1242863

Identity

71.6 mean pLDDT

Naldaviricetes› Lefavirales› Baculoviridae› Alphabaculovirus› Spodoptera_exempta_nucleopolyhedrovirus

TaxID: 1242863

Singleton — not in a non-trivial cluster

Download PDB Download Scores JSON

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 84-96_128-140_160-191

PDB

Domain cluster: rep: orf91-like_protein__YP_009133244__Lambdina_fiscellaria_nucleopolyhedrovirus__1642929__D33-44_83-94_110-140

CATH (9)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3m9wA02	3.40.50.2300	Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator	0.71	48.0	3.44e-01	100.0%	25.3%
4mhxA01	3.40.720.10	Alpha Beta › 3-Layer(aba) Sandwich › Alkaline Phosphatase, subunit A › Alkaline Phosphatase, subunit A	0.60	53.0	3.09e-01	100.0%	54.0%
3fkfD00	3.40.30.10	Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin	0.57	37.0	2.88e-01	100.0%	28.5%
2eo0B00	3.40.1350.10	Alpha Beta › 3-Layer(aba) Sandwich › Trna Endonuclease; Chain: A, domain 1 ›	0.56	43.0	3.43e-01	84.5%	71.8%
5aq1A02	3.30.360.10	Alpha Beta › 2-Layer Sandwich › Dihydrodipicolinate Reductase; domain 2 › Dihydrodipicolinate Reductase; domain 2	0.56	45.0	2.92e-01	89.7%	71.0%
4eogA01	3.40.50.10640	Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › SSO1389-like	0.54	45.0	2.93e-01	98.3%	65.4%
1s12A00	3.30.70.1490	Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Cysteine protease Prp	0.52	43.0	3.84e-01	100.0%	94.7%
3cisH00	3.40.50.12370	Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold ›	0.51	45.0	2.88e-01	100.0%	21.3%
2yutA00	3.40.50.720	Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain	0.50	43.0	3.02e-01	100.0%	35.8%

ECOD (8)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
5082493	2008.1.1.0 ↗	a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like	0.57	37.0	3.29e-01	100.0%	43.3%
3799282	3748.1.1.0 ↗	extended segments › 26S proteasome regulatory subunit RPN8/RPN11 C-terminal domain › 26S proteasome regulatory subunit RPN8/RPN11 C-terminal domain › 26S proteasome regulatory subunit RPN8/RPN11 C-terminal domain	0.56	38.0	2.76e-01	70.7%	67.1%
3919983	2003.1.1.51 ↗	a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains › DFP	0.54	47.0	3.02e-01	100.0%	48.6%
4932899	7516.1.1.0 ↗	a/b three-layered sandwiches › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases	0.54	41.0	2.97e-01	89.7%	65.9%
3431346	2003.1.1.51 ↗	a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains › DFP	0.54	47.0	2.96e-01	100.0%	44.1%
3930408	2484.5.1.2 ↗	mixed a+b and a/b › Ribonuclease H-like › RNaseH-like domain in reverse transcriptase › RNaseH-like domain in reverse transcriptase › RT_RNaseH	0.54	45.0	4.13e-01	96.6%	87.5%
3295061	2005.1.1.0 ↗	a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains	0.50	43.0	3.51e-01	100.0%	63.3%
3318810	2005.1.1.0 ↗	a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains	0.50	42.0	3.15e-01	100.0%	57.6%

D2 medium residues 97-127_141-159

PDB

Domain cluster: representative

CATH (3)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
2yhoE00	3.30.40.10	Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger)	0.52	41.0	3.73e-01	100.0%	64.3%
2j3lA03	3.90.960.10	Alpha Beta › Alpha-Beta Complex › YbaK protein › YbaK/aminoacyl-tRNA synthetase-associated domain	0.51	42.0	3.13e-01	100.0%	54.4%
2lcqA02	2.20.28.10	Mainly Beta › Single Sheet › Rubrerythrin, domain 2 ›	0.50	34.0	3.69e-01	100.0%	94.7%