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hypothetical_protein_KM759_gp010

Euk-Vir

Lymphocystis_disease_virus_4

hypothetical_protein_KM759_gp010__YP_010087883__Lymphocystis_disease_virus_4__2704413

Identity

Accession:
YP_010087883 ↗
Protein ID:
hypothetical_protein_KM759_gp010
Kingdom:
euk

Quality

64.6 mean pLDDT

Taxonomy

Bamfordvirae› Nucleocytoviricota› Megaviricetes› Pimascovirales› Iridoviridae› Lymphocystivirus› Lymphocystis_disease_virus_4

TaxID: 2704413

Cluster

View cluster (4 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 25-76
PDB
Domain cluster: rep: hypothetical_protein_BZK12_gp015__YP_009342083__Lymphocystis_disease_virus_Sa__1898060__D10-52
CATH (5)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1aorA03 1.10.599.10 Mainly Alpha › Orthogonal Bundle › Aldehyde Ferredoxin Oxidoreductase Protein, subunit A; domain 3 › Aldehyde Ferredoxin Oxidoreductase Protein, subunit A, domain 3 0.59 45.0 3.04e-01 86.5% 59.9%
1vquA01 1.20.970.10 Mainly Alpha › Up-down Bundle › Transferase, Pyrimidine Nucleoside Phosphorylase; Chain A, domain 3 › Transferase, Pyrimidine Nucleoside Phosphorylase; Chain C 0.53 38.0 3.54e-01 76.9% 70.1%
2elcA01 1.20.970.10 Mainly Alpha › Up-down Bundle › Transferase, Pyrimidine Nucleoside Phosphorylase; Chain A, domain 3 › Transferase, Pyrimidine Nucleoside Phosphorylase; Chain C 0.52 37.0 3.47e-01 76.9% 83.6%
2k85A00 1.10.10.440 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › FF domain 0.52 35.0 3.36e-01 73.1% 93.8%
2ewtA00 1.10.260.40 Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains 0.51 36.0 3.33e-01 88.5% 56.3%
ECOD (10)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3233721 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.66 58.0 4.85e-01 100.0% 77.8%
3353640 130.1.1.0 ↗ alpha arrays › LEM/SAP HeH motif-like › LEM/SAP HeH motif › LEM/SAP HeH motif 0.64 52.0 4.89e-01 100.0% 87.1%
3879992 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.61 50.0 4.46e-01 98.1% 83.7%
3631996 145.1.1.0 ↗ alpha arrays › F-box domain › F-box domain › F-box domain 0.61 50.0 4.34e-01 100.0% 90.0%
3810074 145.1.1.0 ↗ alpha arrays › F-box domain › F-box domain › F-box domain 0.59 49.0 4.40e-01 100.0% 77.2%
3806475 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.57 47.0 4.30e-01 100.0% 86.7%
3595717 145.1.1.1 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box 0.56 45.0 4.29e-01 98.1% 90.8%
3819345 145.1.1.1 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box 0.56 40.0 4.13e-01 94.2% 84.0%
3926143 170.1.1.0 ↗ alpha bundles › Retrovirus capsid protein › Retrovirus capsid protein-C › Retrovirus capsid protein-C 0.55 44.0 3.79e-01 100.0% 77.9%
3221809 101.35.1.0 ↗ alpha arrays › HTH › DNA repair regulatory protein RecX › DNA repair regulatory protein RecX 0.53 43.0 4.14e-01 92.3% 98.3%
D2 medium residues 80-158
PDB
Domain cluster: representative
CATH (46)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2af5A01 2.40.128.160 Mainly Beta › Beta Barrel › Lipocalin › C1 set domains (antibody constant domain-like) 0.68 37.0 4.31e-01 81.0% 75.9%
1ospO01 2.40.128.160 Mainly Beta › Beta Barrel › Lipocalin › C1 set domains (antibody constant domain-like) 0.67 37.0 3.35e-01 81.0% 39.0%
4hntA04 3.10.600.10 Alpha Beta › Roll › pyruvate carboxylase f1077a mutant fold › pyruvate carboxylase f1077a mutant domain 0.66 42.0 3.86e-01 83.5% 50.5%
2qrdB01 2.20.25.290 Mainly Beta › Single Sheet › N-terminal domain of TfIIb › 0.64 32.0 4.21e-01 77.2% 100.0%
3oa4A01 3.10.180.10 Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1 0.64 38.0 3.26e-01 70.9% 35.3%
3hrsA02 2.30.30.90 Mainly Beta › Roll › SH3 type barrels. › Ferrous iron transport protein A (FeoA) 0.63 44.0 4.49e-01 82.3% 75.0%
2it1A03 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.63 33.0 3.71e-01 70.9% 63.9%
3g1jA00 2.30.30.350 Mainly Beta › Roll › SH3 type barrels. › mobile metagenome of vibrio cholerae. Integron cassette protein vch_cass4. 0.62 48.0 4.66e-01 88.6% 73.3%
5w7zA01 3.10.150.10 Alpha Beta › Roll › DNA Polymerase III; Chain A, domain 2 › DNA Polymerase III, subunit A, domain 2 0.62 47.0 4.22e-01 82.3% 100.0%
1y96D00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.62 39.0 3.93e-01 83.5% 61.4%
3po3S02 2.20.25.10 Mainly Beta › Single Sheet › N-terminal domain of TfIIb › 0.61 36.0 3.78e-01 73.4% 63.5%
6my0A02 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.60 36.0 3.87e-01 79.7% 70.8%
4azpA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.60 44.0 3.74e-01 78.5% 95.5%
2m7oA00 3.10.450.400 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › Uncharacterised protein PF15513, DUF4651 0.60 35.0 3.67e-01 70.9% 64.3%
3q9oA01 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.60 45.0 3.37e-01 83.5% 64.4%
1fu1A01 2.170.210.10 Mainly Beta › Beta Complex › Dna Repair Protein Xrcc4; Chain: A, domain 1 › DNA double-strand break repair and VJ recombination XRCC4, N-terminal 0.59 42.0 3.71e-01 97.5% 50.0%
4m52A02 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.58 44.0 3.85e-01 81.0% 93.4%
2cm4A00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.58 39.0 3.23e-01 83.5% 37.2%
1khiA01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.58 37.0 3.83e-01 86.1% 68.0%
3ulbA01 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.58 39.0 3.89e-01 78.5% 66.3%
5zr6A02 2.30.30.90 Mainly Beta › Roll › SH3 type barrels. › Ferrous iron transport protein A (FeoA) 0.58 41.0 4.21e-01 82.3% 80.3%
6c6sD02 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.58 34.0 3.79e-01 82.3% 75.0%
1o8vA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.58 43.0 3.67e-01 81.0% 94.7%
3p8bB02 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.57 35.0 3.78e-01 82.3% 75.8%
2eqmA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.57 34.0 3.90e-01 82.3% 88.7%
2k4yA00 2.30.30.90 Mainly Beta › Roll › SH3 type barrels. › Ferrous iron transport protein A (FeoA) 0.56 38.0 3.78e-01 81.0% 65.1%
1m1gB03 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.56 34.0 3.70e-01 82.3% 74.6%
2lezA00 3.30.2450.10 Alpha Beta › 2-Layer Sandwich › Secreted effector protein pipB2 fold › Secreted effector protein pipB2 0.56 40.0 3.51e-01 75.9% 82.5%
4fnvA02 2.70.98.70 Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › 0.55 41.0 2.90e-01 81.0% 47.9%
1ib8A02 2.30.30.180 Mainly Beta › Roll › SH3 type barrels. › Ribosome maturation factor RimP, C-terminal domain 0.55 33.0 3.55e-01 81.0% 68.7%
4pifA00 2.100.10.30 Mainly Beta › Aligned Prism › Vitelline Membrane Outer Layer Protein I, subunit A › Jacalin-like lectin domain 0.55 41.0 3.49e-01 81.0% 71.9%
6etzA02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.55 38.0 3.73e-01 70.9% 94.0%
1cbiA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.55 41.0 3.49e-01 81.0% 94.9%
3cebA01 3.30.470.10 Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › Aminotransferase class 4, branched-chain amino acid transferase, N-terminal domain 0.53 36.0 3.58e-01 70.9% 97.6%
3rmuA00 3.10.180.10 Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1 0.53 36.0 3.02e-01 75.9% 41.0%
1mhnA00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.53 32.0 3.51e-01 81.0% 79.7%
2gsbA01 3.30.505.10 Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain 0.53 37.0 3.66e-01 86.1% 69.0%
3us4A00 3.30.505.10 Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain 0.52 36.0 3.35e-01 84.8% 57.7%
2egcA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.52 34.0 3.53e-01 81.0% 70.7%
2ablA02 3.30.505.10 Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain 0.52 36.0 3.36e-01 86.1% 58.8%
3upuA03 2.30.30.780 Mainly Beta › Roll › SH3 type barrels. › 0.51 41.0 3.54e-01 89.9% 71.8%
4bfiB02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.51 37.0 3.56e-01 77.2% 98.9%
2d9tA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.51 29.0 3.44e-01 74.7% 89.8%
1nrvA00 3.30.505.10 Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain 0.51 36.0 3.29e-01 84.8% 58.0%
2v1qA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.50 33.0 3.64e-01 81.0% 88.3%
1d4tA00 3.30.505.10 Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain 0.50 35.0 3.23e-01 86.1% 55.8%
ECOD (54)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4228328 5084.1.1.0 ↗ beta barrels › Outer membrane meander beta-barrels › OMPA-like › OMPA-like 0.70 39.0 3.92e-01 79.7% 53.8%
4998584 227.1.1.1 ↗ a+b two layers › DNA clamp › DNA clamp › DNA clamp › PCNA_N 0.69 55.0 4.58e-01 86.1% 91.9%
5014541 5090.1.1.11 ↗ beta complex topology › Viral glycoprotein, central and dimerisation domains-like › Viral glycoprotein, central and dimerisation domains › Viral glycoprotein, central and dimerisation domains › S_layer_N 0.66 38.0 3.27e-01 87.3% 37.5%
4964966 3504.3.1.1 ↗ beta barrels › MutM N-terminal domain-like › Fibrinogen binding protein N-terminal domain › Fibrinogen binding protein N-terminal domain › NFACT_N 0.65 53.0 4.27e-01 88.6% 68.4%
3328647 4.1.1.219 ↗ beta barrels › SH3 › SH3 › SH3 › LSM12_LSM 0.65 41.0 4.02e-01 83.5% 58.8%
3625037 227.1.1.11 ↗ a+b two layers › DNA clamp › DNA clamp › DNA clamp › Hus1 0.64 49.0 4.13e-01 82.3% 93.3%
3832602 708.1.1.0 ↗ beta complex topology › ETN0001 domain-like › ETN0001 domain-like › NAC/WRKY/GCM/WOPR domain 0.64 40.0 3.63e-01 84.8% 45.5%
3705742 375.1.1.7 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › TFIIS_C 0.64 39.0 4.46e-01 77.2% 84.5%
4141828 4.1.1.97 ↗ beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.63 40.0 4.15e-01 82.3% 68.9%
4168737 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.63 40.0 4.20e-01 82.3% 70.3%
3879653 4.1.1.223 ↗ beta barrels › SH3 › SH3 › SH3 › KIF2A-like_1st 0.63 38.0 3.98e-01 82.3% 67.1%
3798262 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.62 44.0 3.60e-01 74.7% 69.3%
1144827 4.1.1.79 ↗ beta barrels › SH3 › SH3 › SH3 › DUF3601 0.62 48.0 4.68e-01 88.6% 74.2%
3271779 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.62 44.0 3.56e-01 73.4% 58.6%
4955420 2003.1.5.81 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_25 0.62 49.0 3.43e-01 100.0% 26.1%
3710725 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.62 47.0 3.00e-01 83.5% 24.2%
4547801 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.61 38.0 3.64e-01 83.5% 53.3%
3582821 220.1.1.5 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PID 0.61 41.0 3.93e-01 73.4% 60.0%
4118011 4.1.1.248 ↗ beta barrels › SH3 › SH3 › SH3 › CABIT 0.61 42.0 4.14e-01 83.5% 65.9%
2453401 211.1.1.7 ↗ a+b two layers › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase_4 0.61 36.0 3.83e-01 70.9% 66.7%
3941391 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.60 34.0 3.85e-01 82.3% 73.3%
4975478 4.1.1.40 ↗ beta barrels › SH3 › SH3 › SH3 › FeoA 0.60 46.0 4.52e-01 82.3% 78.8%
4614038 9.1.1.1 ↗ beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins › Lipocalin 0.60 46.0 3.87e-01 81.0% 97.0%
4877157 77.1.1.1 ↗ beta meanders › open-sided beta-meander › Outer surface protein › Outer surface protein › Lipoprotein_1 0.60 38.0 2.52e-01 87.3% 16.5%
4932609 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.60 36.0 3.94e-01 82.3% 73.8%
3719143 227.1.1.0 ↗ a+b two layers › DNA clamp › DNA clamp › DNA clamp 0.60 51.0 4.40e-01 100.0% 97.8%
3440094 4.1.1.3 ↗ beta barrels › SH3 › SH3 › SH3 › KOW 0.59 35.0 3.91e-01 82.3% 76.7%
3750685 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.59 42.0 3.63e-01 74.7% 75.2%
4528719 4.1.1.438 ↗ beta barrels › SH3 › SH3 › SH3 › PF27440 0.59 36.0 3.94e-01 82.3% 75.4%
3251940 4.1.1.51 ↗ beta barrels › SH3 › SH3 › SH3 › SGF29_Tudor 0.59 36.0 3.70e-01 82.3% 64.0%
4203592 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.59 35.0 3.77e-01 81.0% 70.8%
4059465 4.1.1.3 ↗ beta barrels › SH3 › SH3 › SH3 › KOW 0.58 35.0 3.78e-01 82.3% 69.1%
4461457 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.58 35.0 3.82e-01 82.3% 73.4%
4984882 4.1.1.3 ↗ beta barrels › SH3 › SH3 › SH3 › KOW 0.58 35.0 3.69e-01 82.3% 67.1%
5042892 4.1.1.3 ↗ beta barrels › SH3 › SH3 › SH3 › KOW 0.58 35.0 3.91e-01 82.3% 80.0%
4087011 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.58 41.0 3.88e-01 82.3% 62.1%
3847592 2004.1.1.0 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.57 41.0 2.59e-01 75.9% 66.3%
2126408 4.1.1.34 ↗ beta barrels › SH3 › SH3 › SH3 › MBT 0.57 34.0 3.45e-01 82.3% 58.0%
3499697 211.1.1.7 ↗ a+b two layers › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase_4 0.56 37.0 3.08e-01 75.9% 37.9%
4112177 4.1.1.3 ↗ beta barrels › SH3 › SH3 › SH3 › KOW 0.56 34.0 3.71e-01 82.3% 73.8%
3429464 10.1.1.2 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Lectin_legB 0.55 45.0 3.70e-01 92.4% 90.5%
3820065 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.55 33.0 3.67e-01 81.0% 83.6%
3961321 223.3.1.2 ↗ a+b three layers › Profilin-like › a+b domain in beta-lactamase/transpeptidase-like proteins › a+b domain in beta-lactamase/transpeptidase-like proteins › Peptidase_S11 0.55 34.0 3.12e-01 92.4% 45.5%
None — 0.54 36.0 3.02e-01 75.9% 38.7%
3195088 2006.1.1.0 ↗ a/b three-layered sandwiches › HAD domain-like › HAD domain-related › HAD-like 0.54 45.0 2.70e-01 93.7% 37.7%
2332800 4059.1.1.0 ↗ a+b complex topology › Serpins › Serpins › Serpins 0.53 39.0 2.60e-01 78.5% 18.9%
3714156 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.53 35.0 3.46e-01 82.3% 63.5%
3713627 5.1.4.6 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40,ANAPC4_WD40 0.52 43.0 2.94e-01 92.4% 39.0%
4485741 5.1.5.1 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › WD40 0.52 38.0 2.28e-01 81.0% 17.6%
3416068 4.1.1.187 ↗ beta barrels › SH3 › SH3 › SH3 › DIRP 0.52 35.0 2.88e-01 70.9% 74.8%
4538466 3197.1.1.1 ↗ a+b two layers › N-terminal domain of effector protein PipB2 › N-terminal domain of effector protein PipB2 › N-terminal domain of effector protein PipB2 › PipB2_N 0.52 41.0 3.53e-01 87.3% 94.6%
3998599 2003.1.3.27 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › Nucleotide-binding domain › Amino_oxidase 0.51 40.0 2.56e-01 88.6% 96.5%
5010824 2.4.1.7 ↗ beta barrels › OB-fold › MOP-like › MOP-like › OB_MalK 0.50 36.0 3.24e-01 75.9% 99.1%
4941490 274.1.1.0 ↗ a+b two layers › Pili subunits › Pili subunits › Pili subunits 0.50 36.0 3.06e-01 75.9% 56.3%
D3 medium residues 159-206_220-289
PDB