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hypothetical_protein_KM759_gp019

Euk-Vir

Lymphocystis_disease_virus_4

hypothetical_protein_KM759_gp019__YP_010087892__Lymphocystis_disease_virus_4__2704413

Identity

Accession:
YP_010087892 ↗
Protein ID:
hypothetical_protein_KM759_gp019
Kingdom:
euk

Quality

72.9 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 5-103
PDB
D2 high residues 106-205
PDB
Domain cluster: representative
CATH (19)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2kiwA01 1.10.150.130 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Tyrosine recombinase, N-terminal domain 0.66 49.0 5.19e-01 80.0% 90.7%
2yskA00 1.10.490.110 Mainly Alpha › Orthogonal Bundle › Globin-like › Uncharacterized conserved protein DUF2267 0.64 52.0 4.58e-01 87.0% 93.1%
3nrwA00 1.10.150.130 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Tyrosine recombinase, N-terminal domain 0.61 49.0 4.84e-01 87.0% 95.2%
3tahA02 1.10.287.1770 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.60 36.0 3.83e-01 89.0% 67.0%
3ousA00 1.10.287.70 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.60 36.0 3.87e-01 82.0% 70.7%
1hbgA00 1.10.490.10 Mainly Alpha › Orthogonal Bundle › Globin-like › Globins 0.58 46.0 4.13e-01 88.0% 89.1%
2bnlC00 1.10.490.10 Mainly Alpha › Orthogonal Bundle › Globin-like › Globins 0.58 46.0 4.24e-01 88.0% 91.8%
3sqiA01 1.10.150.540 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › 0.57 44.0 4.49e-01 85.0% 92.9%
1b0uA00 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.56 49.0 3.71e-01 99.0% 42.2%
3owaA01 1.10.540.10 Mainly Alpha › Orthogonal Bundle › Butyryl-Coa Dehydrogenase, subunit A; domain 1 › Acyl-CoA dehydrogenase/oxidase, N-terminal domain 0.56 38.0 3.49e-01 70.0% 70.3%
1jfaB00 1.10.600.10 Mainly Alpha › Orthogonal Bundle › Farnesyl Diphosphate Synthase › Farnesyl Diphosphate Synthase 0.55 48.0 3.35e-01 98.0% 65.7%
7p2yd01 1.10.520.20 Mainly Alpha › Orthogonal Bundle › Peroxidase; domain 1 › N-terminal domain of the delta subunit of the F1F0-ATP synthase 0.55 41.0 4.16e-01 79.0% 81.8%
6cnzF00 1.20.59.10 Mainly Alpha › Up-down Bundle › Chorismate Mutase Domain, subunit A › Chorismate mutase 0.53 43.0 3.82e-01 93.0% 74.1%
1isiA01 1.20.82.10 Mainly Alpha › Up-down Bundle › ADP Ribosyl Cyclase; Chain A, domain 1 › ADP Ribosyl Cyclase; Chain A, domain 1 0.53 42.0 3.94e-01 85.0% 95.1%
1np3B02 6.10.240.10 Special › Helix non-globular › ProC C-terminal domain-like fold › 0.52 35.0 3.19e-01 79.0% 48.3%
2oktA01 3.30.390.10 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain 0.52 38.0 3.59e-01 79.0% 85.2%
4akgA08 1.10.472.130 Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Dynein motor, AAA2 domain, small subdomain 0.52 44.0 3.93e-01 100.0% 85.9%
1wmwB00 1.10.600.10 Mainly Alpha › Orthogonal Bundle › Farnesyl Diphosphate Synthase › Farnesyl Diphosphate Synthase 0.51 44.0 3.21e-01 100.0% 64.3%
3lvyE01 1.20.1290.10 Mainly Alpha › Up-down Bundle › AhpD-like › AhpD-like 0.51 42.0 3.60e-01 100.0% 55.2%
ECOD (14)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3626689 101.1.2.461 alpha arrays › HTH › HTH › winged helix domain › HTH_NPRL3 0.67 53.0 5.17e-01 96.0% 78.2%
4929008 186.1.1.0 alpha arrays › lambda integrase-N-like › lambda integrase-N › lambda integrase-N 0.64 57.0 5.11e-01 100.0% 88.6%
4962931 186.1.1.1 alpha arrays › lambda integrase-N-like › lambda integrase-N › lambda integrase-N › Phage_int_SAM_1 0.63 50.0 4.80e-01 86.0% 86.1%
4965844 186.1.1.0 alpha arrays › lambda integrase-N-like › lambda integrase-N › lambda integrase-N 0.60 48.0 4.71e-01 87.0% 90.0%
4954549 4275.1.1.0 alpha arrays › Hypothetical protein YqbG-like › Hypothetical protein YqbG-like › Hypothetical protein YqbG-like 0.60 46.0 4.49e-01 81.0% 96.4%
4937529 103.9.1.0 alpha arrays › RuvA-C › RanGAP2 N-terminal domain › RanGAP2 N-terminal domain 0.58 42.0 4.23e-01 77.0% 93.0%
5052392 102.1.3.0 alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › PAP/OAS1 substrate-binding domain 0.55 45.0 4.31e-01 90.0% 93.0%
5007440 5054.1.1.6 alpha complex topology › Voltage-gated ion channels › Voltage-gated ion channels › Voltage-gated ion channels › TrkH 0.55 36.0 3.71e-01 82.0% 71.0%
4040372 2004.1.1.5 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › ABC_tran 0.54 46.0 3.48e-01 97.0% 53.3%
3725774 5051.1.1.9 alpha complex topology › Sodium:neurotransmitter symporter family (SNF)-like › Sodium:neurotransmitter symporter family (SNF)-like › Sodium:neurotransmitter symporter family (SNF)-like › Transp_cyt_pur 0.53 41.0 2.69e-01 83.0% 65.9%
3590136 162.1.1.1 alpha bundles › PTS-regulatory domain, PRD › PTS-regulatory domain, PRD › PTS-regulatory domain, PRD › PRD 0.53 46.0 4.48e-01 99.0% 90.9%
3951387 148.1.3.0 alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain 0.52 40.0 4.20e-01 94.0% 92.2%
3577478 101.1.10.1 alpha arrays › HTH › HTH › Cyclin-like › Cyclin_N 0.51 42.0 3.51e-01 93.0% 60.5%
3287063 109.3.1.376 alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat › DUF6537 0.51 44.0 3.91e-01 100.0% 94.8%
D3 high residues 219-371
PDB
CATH (9)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4a8eA02 1.10.443.10 Mainly Alpha › Orthogonal Bundle › hpI Integrase; Chain A › Intergrase catalytic core 0.84 79.0 7.41e-01 98.0% 93.9%
5jk0B01 1.10.443.10 Mainly Alpha › Orthogonal Bundle › hpI Integrase; Chain A › Intergrase catalytic core 0.82 73.0 6.94e-01 92.2% 90.2%
2a3vA02 1.10.443.10 Mainly Alpha › Orthogonal Bundle › hpI Integrase; Chain A › Intergrase catalytic core 0.82 72.0 6.37e-01 92.2% 86.7%
3nkhA00 1.10.443.10 Mainly Alpha › Orthogonal Bundle › hpI Integrase; Chain A › Intergrase catalytic core 0.79 70.0 6.08e-01 92.2% 81.9%
1f44A01 1.10.443.10 Mainly Alpha › Orthogonal Bundle › hpI Integrase; Chain A › Intergrase catalytic core 0.78 69.0 6.27e-01 92.2% 85.6%
1ae9A00 1.10.443.10 Mainly Alpha › Orthogonal Bundle › hpI Integrase; Chain A › Intergrase catalytic core 0.76 65.0 6.27e-01 90.2% 85.4%
1a31A03 3.90.15.10 Alpha Beta › Alpha-Beta Complex › Topoisomerase I; Chain A, domain 3 › Topoisomerase I; Chain A, domain 3 0.72 51.0 5.20e-01 72.5% 86.7%
1p4xA02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.56 38.0 4.15e-01 82.4% 84.6%
3lcvB01 1.10.8.10 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Ubiquitin-associated (UBA) domain 0.54 21.0 3.38e-01 83.0% 96.5%
ECOD (57)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4936284 101.1.8.1 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.90 64.0 7.36e-01 76.5% 95.7%
5010452 101.1.8.1 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.89 62.0 7.31e-01 73.9% 98.2%
4637388 101.1.8.1 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.88 72.0 6.96e-01 90.2% 76.5%
4428937 101.1.8.1 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.88 65.0 7.40e-01 77.8% 97.5%
4973226 101.1.8.1 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.87 65.0 7.34e-01 80.4% 97.5%
4930303 101.1.8.1 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.87 61.0 7.08e-01 77.8% 95.7%
4954764 101.1.8.1 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.87 56.0 6.81e-01 77.1% 96.2%
4962932 101.1.8.1 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.86 65.0 6.34e-01 77.1% 97.0%
5016981 101.1.8.1 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.86 63.0 7.10e-01 78.4% 95.8%
5037644 101.1.8.1 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.86 60.0 6.83e-01 75.8% 91.7%
5080069 101.1.8.1 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.86 62.0 7.04e-01 74.5% 99.2%
3587374 101.1.8.1 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.85 65.0 6.36e-01 78.4% 96.4%
4996190 101.1.8.1 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.85 64.0 7.10e-01 77.1% 98.4%
4285602 101.1.8.1 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.85 64.0 6.99e-01 77.1% 91.5%
4959579 101.1.8.1 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.85 65.0 6.89e-01 78.4% 97.0%
4580960 101.1.8.1 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.85 63.0 6.63e-01 76.5% 90.7%
5083074 101.1.8.1 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.84 63.0 6.40e-01 76.5% 93.3%
5052502 101.1.8.1 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.84 64.0 6.83e-01 77.8% 94.8%
4032881 101.1.8.1 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.84 63.0 6.77e-01 77.1% 91.9%
4071300 101.1.8.1 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.84 64.0 6.83e-01 77.8% 97.8%
5029991 101.1.8.1 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.84 62.0 6.88e-01 77.1% 92.8%
4969226 101.1.8.1 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.84 64.0 6.86e-01 79.1% 98.5%
4994277 101.1.8.1 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.83 74.0 6.95e-01 92.2% 80.6%
4999472 101.1.8.1 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.83 75.0 6.93e-01 94.8% 100.0%
5059725 101.1.8.1 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.83 72.0 6.76e-01 90.2% 77.8%
4210863 101.1.8.1 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.83 62.0 6.72e-01 76.5% 90.0%
4413773 101.1.8.1 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.83 63.0 6.75e-01 78.4% 88.9%
4947463 101.1.8.0 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes 0.83 55.0 6.62e-01 73.9% 98.1%
4979786 101.1.8.1 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.83 61.0 6.81e-01 78.4% 95.8%
4960057 101.1.8.1 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.82 60.0 6.29e-01 74.5% 90.0%
4938259 101.1.8.0 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes 0.82 59.0 6.14e-01 73.9% 100.0%
4964783 101.1.8.0 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes 0.82 61.0 5.86e-01 75.8% 97.6%
4981577 101.1.8.1 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.82 61.0 6.79e-01 78.4% 93.6%
4964778 101.1.8.1 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.82 60.0 5.81e-01 75.2% 96.5%
4380833 101.1.8.1 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.82 68.0 6.60e-01 90.2% 79.4%
5016957 101.1.8.1 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.82 72.0 6.89e-01 92.2% 90.3%
4357768 101.1.8.0 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes 0.82 61.0 6.63e-01 76.5% 90.0%
4274013 101.1.8.1 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.82 62.0 6.33e-01 78.4% 97.3%
3271483 101.1.8.1 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.82 71.0 6.59e-01 92.2% 90.5%
4954527 101.1.8.1 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.81 77.0 6.71e-01 100.0% 93.6%
4034370 101.1.8.1 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.81 62.0 6.92e-01 77.8% 99.2%
5058518 101.1.8.1 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.81 73.0 6.69e-01 94.8% 94.9%
4954640 101.1.8.0 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes 0.81 72.0 6.58e-01 94.1% 98.5%
4392937 101.1.8.0 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes 0.81 67.0 6.75e-01 90.2% 85.2%
4998701 101.1.8.1 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.81 70.0 6.58e-01 90.2% 82.8%
4961917 101.1.8.0 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes 0.81 75.0 6.88e-01 97.4% 97.9%
5028306 101.1.8.1 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.81 70.0 6.55e-01 90.2% 81.7%
4965845 101.1.8.1 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.80 70.0 6.49e-01 92.2% 85.3%
4992939 101.1.8.1 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.80 71.0 6.83e-01 93.5% 98.2%
4961786 101.1.8.1 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.80 61.0 6.19e-01 79.1% 95.3%
4093657 101.1.8.1 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.80 59.0 6.30e-01 76.5% 91.1%
5003452 101.1.8.1 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.79 60.0 6.52e-01 78.4% 97.7%
4934137 101.1.8.1 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.79 60.0 5.97e-01 77.8% 94.8%
5027341 101.1.8.1 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.78 68.0 6.76e-01 92.2% 89.4%
4453818 101.1.8.1 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.77 68.0 6.94e-01 94.1% 94.7%
5007182 101.1.8.0 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes 0.75 71.0 7.11e-01 100.0% 98.7%
3599060 101.1.8.0 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes 0.73 64.0 5.77e-01 92.2% 87.0%