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hypothetical_protein_KM759_gp044

Euk-Vir

Lymphocystis_disease_virus_4

hypothetical_protein_KM759_gp044__YP_010087917__Lymphocystis_disease_virus_4__2704413

Identity

Accession:
YP_010087917 ↗
Protein ID:
hypothetical_protein_KM759_gp044
Kingdom:
euk

Quality

76.2 mean pLDDT

Taxonomy

Bamfordvirae› Nucleocytoviricota› Megaviricetes› Pimascovirales› Iridoviridae› Lymphocystivirus› Lymphocystis_disease_virus_4

TaxID: 2704413

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 13-78
PDB
Domain cluster: representative
CATH (22)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3nbiA01 1.10.8.1020 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › RecQ-mediated genome instability protein 1, N-terminal domain 0.74 58.0 6.16e-01 95.5% 96.6%
1gvfB00 3.20.20.70 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I 0.70 58.0 3.90e-01 95.5% 88.7%
2ebiA01 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.64 40.0 4.06e-01 83.3% 63.6%
1o17D02 3.40.1030.10 Alpha Beta › 3-Layer(aba) Sandwich › Pyrimidine Nucleoside Phosphorylase; Chain A, domain 2 › Nucleoside phosphorylase/phosphoribosyltransferase catalytic domain 0.64 55.0 3.83e-01 100.0% 76.2%
2r9yA01 3.30.497.10 Alpha Beta › 2-Layer Sandwich › Antithrombin; Chain I, domain 2 › Antithrombin, subunit I, domain 2 0.63 54.0 3.77e-01 97.0% 92.2%
4ou7A00 1.10.8.1180 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › 0.62 50.0 4.90e-01 95.5% 84.5%
1aj5A00 1.10.238.10 Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › EF-hand 0.62 53.0 3.99e-01 98.5% 66.5%
3b0bB00 1.10.20.10 Mainly Alpha › Orthogonal Bundle › Histone, subunit A › Histone, subunit A 0.61 45.0 4.01e-01 87.9% 53.6%
3iieB03 1.10.1740.10 Mainly Alpha › Orthogonal Bundle › Rna Polymerase Sigma Factor; Chain: A › RNA polymerase sigma factor, region 2, helix turn helix motif 0.61 52.0 4.83e-01 98.5% 84.7%
2y1eA03 1.10.1740.10 Mainly Alpha › Orthogonal Bundle › Rna Polymerase Sigma Factor; Chain: A › RNA polymerase sigma factor, region 2, helix turn helix motif 0.61 51.0 4.73e-01 98.5% 85.1%
3a06B03 1.10.1740.10 Mainly Alpha › Orthogonal Bundle › Rna Polymerase Sigma Factor; Chain: A › RNA polymerase sigma factor, region 2, helix turn helix motif 0.60 50.0 4.71e-01 100.0% 85.2%
3vdpA01 1.10.8.420 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › RecR Domain 1 0.59 38.0 4.17e-01 83.3% 84.6%
3s64A00 1.10.225.10 Mainly Alpha › Orthogonal Bundle › NK-Lysin › Saposin-like 0.58 44.0 4.10e-01 84.8% 66.7%
3keyA01 1.10.10.1080 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Stn1, N-terminal wHTH domain 0.57 46.0 4.24e-01 89.4% 77.0%
4i5jA02 1.10.238.10 Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › EF-hand 0.57 45.0 3.50e-01 90.9% 45.2%
1oaiA00 1.10.8.10 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Ubiquitin-associated (UBA) domain 0.56 40.0 4.20e-01 100.0% 86.4%
3fwbA01 1.10.238.10 Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › EF-hand 0.56 39.0 3.69e-01 93.9% 59.8%
3t69A02 3.30.420.310 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › 2-keto-3-deoxy-galactonokinase, C-terminal domain 0.55 42.0 3.00e-01 86.4% 47.8%
7craA02 1.20.58.1480 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.54 49.0 4.33e-01 98.5% 91.3%
4o5fA02 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.52 43.0 3.43e-01 89.4% 70.1%
5xdcB01 1.10.540.10 Mainly Alpha › Orthogonal Bundle › Butyryl-Coa Dehydrogenase, subunit A; domain 1 › Acyl-CoA dehydrogenase/oxidase, N-terminal domain 0.51 43.0 3.62e-01 100.0% 55.0%
6xy4A01 1.10.437.10 Mainly Alpha › Orthogonal Bundle › Apoptosis Regulator Bcl-x › Blc2-like 0.51 45.0 3.66e-01 98.5% 78.9%
ECOD (33)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
2576203 3787.1.1.0 ↗ alpha bundles › HAD superfamily helical bundle insertion domain 0.87 70.0 5.70e-01 98.5% 49.6%
3966804 148.1.3.238 ↗ alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › DUF815 0.75 59.0 6.11e-01 92.4% 96.7%
4977230 142.1.1.0 ↗ alpha complex topology › Sigma2 domain-like › Sigma2 domain of RNA polymerase sigma factors › Sigma2 domain of RNA polymerase sigma factors 0.68 57.0 5.96e-01 90.9% 100.0%
3868871 213.1.1.1 ↗ a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) › Acetyltransf_1 0.68 47.0 3.34e-01 72.7% 27.3%
3508870 148.1.3.172 ↗ alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › AAA_lid_14 0.67 57.0 5.01e-01 98.5% 64.0%
4045490 606.1.1.0 ↗ alpha complex topology › Nop N-terminal domain › Nop N-terminal domain › Nop N-terminal domain 0.66 40.0 3.51e-01 100.0% 42.1%
3726041 3831.1.1.0 ↗ alpha bundles › Secreted protein of unknown function DUF1311 › Secreted protein of unknown function DUF1311 › Secreted protein of unknown function DUF1311 0.65 50.0 4.47e-01 84.8% 68.4%
3596790 108.1.1.0 ↗ alpha arrays › EF-hand › EF-hand-related › EF-hand 0.64 49.0 4.66e-01 95.5% 70.0%
4343262 103.1.1.0 ↗ alpha arrays › RuvA-C › RuvA-C, UBA, CRAL/TRIO-N, HBS1 › UBA-like domain 0.63 50.0 5.11e-01 98.5% 89.2%
3602245 4953.1.1.0 ↗ beta barrels › L-aspartase C-terminal domain-like › L-aspartase C-terminal domain-like › L-aspartase C-terminal domain-like 0.63 46.0 4.68e-01 87.9% 81.5%
4144086 166.1.1.1 ↗ alpha superhelices › 1-deoxy-D-xylulose-5-phosphate reductoisomerase-C › 1-deoxy-D-xylulose-5-phosphate reductoisomerase-C › 1-deoxy-D-xylulose-5-phosphate reductoisomerase-C › DXPR_C 0.60 50.0 4.44e-01 97.0% 72.0%
4478129 166.1.1.1 ↗ alpha superhelices › 1-deoxy-D-xylulose-5-phosphate reductoisomerase-C › 1-deoxy-D-xylulose-5-phosphate reductoisomerase-C › 1-deoxy-D-xylulose-5-phosphate reductoisomerase-C › DXPR_C 0.59 47.0 4.39e-01 92.4% 84.4%
3187211 592.1.1.2 ↗ alpha arrays › PWI domain-like › PWI domain › PWI domain › Helicase_PWI 0.59 43.0 3.57e-01 83.3% 43.3%
4964866 148.1.3.404 ↗ alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › PrkA 0.58 49.0 3.83e-01 100.0% 80.0%
3993129 108.1.1.120 ↗ alpha arrays › EF-hand › EF-hand-related › EF-hand › PF27858 0.58 49.0 4.23e-01 97.0% 58.2%
4932613 103.8.1.1 ↗ alpha arrays › RuvA-C › Hypothetical protein AF0491, middle domain › Hypothetical protein AF0491, middle domain › SBDS_domain_II 0.58 48.0 4.77e-01 95.5% 90.0%
3269592 198.1.1.2 ↗ alpha arrays › Saposin-like › Saposin-like › Saposin-like › SapB_2,SapB_1 0.57 42.0 3.87e-01 90.9% 61.2%
4245968 108.1.1.0 ↗ alpha arrays › EF-hand › EF-hand-related › EF-hand 0.56 42.0 3.87e-01 83.3% 62.2%
3508963 614.1.1.1 ↗ alpha duplicates or obligate multimers › L27 domain › L27 domain › L27 domain › L27 0.56 51.0 4.40e-01 100.0% 95.0%
3248091 198.1.1.2 ↗ alpha arrays › Saposin-like › Saposin-like › Saposin-like › SapB_2,SapB_1 0.56 41.0 3.78e-01 90.9% 61.2%
4268731 601.1.1.146 ↗ alpha bundles › Four-helical up-and-down bundle › alpha-catenin-related › alpha-catenin/vinculin › Adenylate_cycl 0.54 44.0 3.20e-01 89.4% 37.4%
5058451 601.7.1.0 ↗ alpha bundles › Four-helical up-and-down bundle › HEPN › Nucleotidyltransferase substrate binding subunit/domain 0.54 45.0 3.19e-01 90.9% 45.0%
4098405 2004.1.1.224 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › P-loop_SecA 0.54 44.0 2.83e-01 86.4% 29.3%
3681341 650.1.1.8 ↗ alpha bundles › Chaperone J-domain › Chaperone J-domain › Chaperone J-domain › Ovate 0.54 47.0 4.83e-01 93.9% 100.0%
4945326 632.7.1.0 ↗ alpha bundles › immunoglobulin/albumin-binding domain-like › Heat shock protein 70kD (HSP70), C-terminal subdomain › Heat shock protein 70kD (HSP70), C-terminal subdomain 0.54 43.0 4.06e-01 86.4% 76.2%
3869732 1008.1.1.107 ↗ alpha bundles › BRCC36 C-terminal helical domain › BRCC36 C-terminal helical domain › BRCC36 C-terminal helical domain › TEX13 0.52 42.0 3.13e-01 98.5% 37.3%
3318195 632.1.1.0 ↗ alpha bundles › immunoglobulin/albumin-binding domain-like › Families 57/38 glycoside transferase middle domain › Families 57/38 glycoside transferase middle domain 0.52 44.0 4.16e-01 92.4% 96.2%
4985462 192.2.1.89 ↗ alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › DUF7121 0.52 38.0 2.54e-01 77.3% 28.7%
3520768 5050.1.1.9 ↗ alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › MFS_1 0.52 44.0 3.19e-01 98.5% 40.5%
3236936 5050.1.1.0 ↗ alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter 0.51 41.0 3.09e-01 95.5% 81.5%
3716587 130.1.1.0 ↗ alpha arrays › LEM/SAP HeH motif-like › LEM/SAP HeH motif › LEM/SAP HeH motif 0.51 37.0 4.04e-01 90.9% 94.5%
3887439 5050.1.1.9 ↗ alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › MFS_1 0.51 46.0 3.19e-01 100.0% 64.8%
3252439 198.1.1.10 ↗ alpha arrays › Saposin-like › Saposin-like › Saposin-like › SapB_2, SapB_1, Saposin 0.50 38.0 3.62e-01 93.9% 68.8%