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hypothetical_protein_KM759_gp064

Euk-Vir

Lymphocystis_disease_virus_4

hypothetical_protein_KM759_gp064__YP_010087937__Lymphocystis_disease_virus_4__2704413

Identity

Accession:
YP_010087937 ↗
Protein ID:
hypothetical_protein_KM759_gp064
Kingdom:
euk

Quality

64.7 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 29-132
PDB
D2 high residues 165-252
PDB
Domain cluster: representative
CATH (40)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2c9wA01 3.30.505.10 Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain 0.84 77.0 7.06e-01 100.0% 84.1%
1i3zA00 3.30.505.10 Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain 0.81 74.0 7.03e-01 100.0% 94.2%
2izvA00 3.30.505.10 Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain 0.81 75.0 6.00e-01 100.0% 58.9%
2ci9B00 3.30.505.10 Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain 0.80 74.0 7.10e-01 100.0% 98.0%
2vifA01 3.30.505.10 Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain 0.80 73.0 6.46e-01 100.0% 85.7%
1d4tA00 3.30.505.10 Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain 0.80 72.0 6.85e-01 100.0% 93.3%
6pxcA00 3.30.505.10 Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain 0.80 73.0 6.90e-01 100.0% 89.4%
1nrvA00 3.30.505.10 Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain 0.79 73.0 6.98e-01 100.0% 94.0%
3mazA00 3.30.505.10 Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain 0.79 72.0 6.95e-01 100.0% 91.9%
3us4A00 3.30.505.10 Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain 0.79 72.0 7.01e-01 100.0% 94.8%
2knoA01 3.30.505.10 Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain 0.79 72.0 6.67e-01 100.0% 98.2%
3buxB03 3.30.505.10 Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain 0.79 64.0 6.51e-01 100.0% 88.4%
1rjaA00 3.30.505.10 Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain 0.78 70.0 6.77e-01 98.9% 92.0%
2dvjA01 3.30.505.10 Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain 0.78 72.0 6.02e-01 100.0% 74.3%
3gxwC00 3.30.505.10 Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain 0.78 70.0 6.73e-01 97.7% 89.0%
2ablA02 3.30.505.10 Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain 0.78 71.0 6.88e-01 100.0% 95.9%
2xp1A01 3.30.505.10 Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain 0.78 65.0 6.39e-01 97.7% 84.2%
1h9oA00 3.30.505.10 Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain 0.77 70.0 6.57e-01 100.0% 88.9%
2crhA01 3.30.505.10 Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain 0.76 70.0 6.64e-01 100.0% 95.1%
2el8A01 3.30.505.10 Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain 0.76 64.0 6.40e-01 93.2% 95.6%
1milA00 3.30.505.10 Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain 0.76 69.0 6.51e-01 100.0% 88.5%
1uurA04 3.30.505.10 Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain 0.75 63.0 5.45e-01 100.0% 59.4%
2xp1A02 3.30.505.10 Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain 0.70 55.0 5.73e-01 94.3% 95.0%
1xa6A01 3.30.505.10 Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain 0.64 56.0 5.33e-01 96.6% 84.6%
6i8xA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.62 48.0 4.00e-01 81.8% 49.7%
1xd3C00 3.40.532.10 Alpha Beta › 3-Layer(aba) Sandwich › Ubiquitin C-terminal Hydrolase UCH-l3 › Peptidase C12, ubiquitin carboxyl-terminal hydrolase 0.59 49.0 3.60e-01 90.9% 94.7%
1o8vA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.58 44.0 3.90e-01 81.8% 60.9%
1mdcA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.56 43.0 3.79e-01 81.8% 63.4%
1ukfA00 3.90.70.20 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › 0.56 47.0 3.72e-01 94.3% 47.9%
1wv4B00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.55 41.0 3.51e-01 81.8% 69.5%
4hs5A00 3.30.920.10 Alpha Beta › 2-Layer Sandwich › Metal Transport, Frataxin; Chain A › Frataxin/CyaY 0.54 46.0 4.36e-01 100.0% 79.0%
5cvmA00 3.90.70.10 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases 0.54 47.0 3.29e-01 100.0% 48.1%
4i8oA01 3.30.310.240 Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › Bacterial toxin RNase RnlA/LsoA, N-terminal domain 0.53 40.0 4.06e-01 92.0% 79.8%
3ihpA03 3.90.70.10 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases 0.53 44.0 2.97e-01 90.9% 41.2%
2wdtC02 3.30.1490.420 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › Ubiquitin carboxyl-terminal hydrolase, domain 2 0.51 45.0 4.30e-01 95.5% 89.1%
6v55A02 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.51 44.0 3.50e-01 100.0% 92.8%
3ijtB00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.51 39.0 3.40e-01 83.0% 67.8%
4a0tA01 6.20.80.10 Special › Other non-globular › Glycosyl hydrolase fold › 0.51 33.0 3.72e-01 73.9% 93.4%
2cztA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.50 43.0 3.64e-01 98.9% 94.8%
2m4lA00 2.40.128.360 Mainly Beta › Beta Barrel › Lipocalin › 0.50 42.0 4.08e-01 97.7% 85.9%
ECOD (80)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3933443 214.1.1.1 a+b two layers › SH2 › SH2 › SH2 › SH2 0.85 57.0 6.37e-01 70.5% 87.1%
3213146 214.1.1.1 a+b two layers › SH2 › SH2 › SH2 › SH2 0.84 79.0 7.23e-01 100.0% 90.0%
3887656 214.1.1.1 a+b two layers › SH2 › SH2 › SH2 › SH2 0.84 78.0 6.74e-01 100.0% 86.2%
4044230 214.1.1.1 a+b two layers › SH2 › SH2 › SH2 › SH2 0.84 78.0 6.02e-01 100.0% 67.2%
3996228 214.1.1.1 a+b two layers › SH2 › SH2 › SH2 › SH2 0.84 77.0 6.44e-01 100.0% 66.2%
3798324 214.1.1.0 a+b two layers › SH2 › SH2 › SH2 0.84 77.0 6.51e-01 100.0% 68.6%
3905081 214.1.1.1 a+b two layers › SH2 › SH2 › SH2 › SH2 0.83 77.0 6.79e-01 100.0% 70.4%
3780015 214.1.1.0 a+b two layers › SH2 › SH2 › SH2 0.83 76.0 6.13e-01 100.0% 66.9%
3472650 214.1.1.1 a+b two layers › SH2 › SH2 › SH2 › SH2 0.82 76.0 6.60e-01 100.0% 74.6%
3842643 214.1.1.1 a+b two layers › SH2 › SH2 › SH2 › SH2 0.82 76.0 6.68e-01 100.0% 76.8%
3937603 214.1.1.1 a+b two layers › SH2 › SH2 › SH2 › SH2 0.82 76.0 6.76e-01 100.0% 80.0%
3396847 214.1.1.1 a+b two layers › SH2 › SH2 › SH2 › SH2 0.82 75.0 6.56e-01 100.0% 75.0%
3546286 214.1.1.1 a+b two layers › SH2 › SH2 › SH2 › SH2 0.82 75.0 6.65e-01 100.0% 76.8%
3798360 214.1.1.0 a+b two layers › SH2 › SH2 › SH2 0.82 75.0 7.05e-01 100.0% 91.4%
3624613 214.1.1.1 a+b two layers › SH2 › SH2 › SH2 › SH2 0.81 75.0 6.80e-01 100.0% 83.5%
3903512 214.1.1.1 a+b two layers › SH2 › SH2 › SH2 › SH2 0.81 75.0 6.61e-01 100.0% 80.0%
3490666 214.1.1.1 a+b two layers › SH2 › SH2 › SH2 › SH2 0.81 75.0 6.61e-01 100.0% 82.4%
3843531 214.1.1.1 a+b two layers › SH2 › SH2 › SH2 › SH2 0.81 75.0 7.18e-01 100.0% 95.0%
3485485 214.1.1.1 a+b two layers › SH2 › SH2 › SH2 › SH2 0.81 74.0 6.62e-01 100.0% 77.5%
3576812 214.1.1.0 a+b two layers › SH2 › SH2 › SH2 0.81 70.0 6.88e-01 93.2% 92.6%
3479653 214.1.1.0 a+b two layers › SH2 › SH2 › SH2 0.81 75.0 6.79e-01 100.0% 91.3%
2987315 214.1.1.0 a+b two layers › SH2 › SH2 › SH2 0.81 74.0 6.12e-01 100.0% 61.6%
4602126 214.1.1.1 a+b two layers › SH2 › SH2 › SH2 › SH2 0.81 73.0 6.81e-01 100.0% 88.2%
3414808 214.1.1.1 a+b two layers › SH2 › SH2 › SH2 › SH2 0.80 74.0 6.61e-01 100.0% 88.3%
3231719 214.1.1.1 a+b two layers › SH2 › SH2 › SH2 › SH2 0.80 71.0 7.13e-01 100.0% 93.3%
3755862 214.1.1.1 a+b two layers › SH2 › SH2 › SH2 › SH2 0.80 71.0 6.91e-01 97.7% 88.4%
3482731 214.1.1.0 a+b two layers › SH2 › SH2 › SH2 0.80 72.0 6.25e-01 100.0% 89.6%
3871935 214.1.1.1 a+b two layers › SH2 › SH2 › SH2 › SH2 0.80 73.0 6.32e-01 100.0% 81.2%
3211478 214.1.1.0 a+b two layers › SH2 › SH2 › SH2 0.80 66.0 5.93e-01 100.0% 65.0%
3213147 214.1.1.1 a+b two layers › SH2 › SH2 › SH2 › SH2 0.80 74.0 6.70e-01 100.0% 90.4%
3492343 214.1.1.1 a+b two layers › SH2 › SH2 › SH2 › SH2 0.80 72.0 6.39e-01 100.0% 88.8%
3249214 214.1.1.1 a+b two layers › SH2 › SH2 › SH2 › SH2 0.80 72.0 6.45e-01 100.0% 72.5%
3512674 214.1.1.1 a+b two layers › SH2 › SH2 › SH2 › SH2 0.79 72.0 6.24e-01 100.0% 81.5%
3276831 214.1.1.1 a+b two layers › SH2 › SH2 › SH2 › SH2 0.79 71.0 7.07e-01 96.6% 95.6%
3513931 214.1.1.9 a+b two layers › SH2 › SH2 › SH2 › DUF7063 0.79 73.0 6.74e-01 100.0% 90.0%
3508125 214.1.1.9 a+b two layers › SH2 › SH2 › SH2 › DUF7063 0.79 73.0 6.74e-01 100.0% 90.0%
3474737 214.1.1.1 a+b two layers › SH2 › SH2 › SH2 › SH2 0.79 72.0 5.91e-01 100.0% 70.3%
3746947 214.1.1.1 a+b two layers › SH2 › SH2 › SH2 › SH2 0.79 72.0 6.67e-01 100.0% 84.5%
3246307 214.1.1.0 a+b two layers › SH2 › SH2 › SH2 0.79 72.0 6.56e-01 100.0% 82.6%
3257384 214.1.1.1 a+b two layers › SH2 › SH2 › SH2 › SH2 0.79 72.0 6.68e-01 100.0% 83.6%
4550200 214.1.1.1 a+b two layers › SH2 › SH2 › SH2 › SH2 0.79 72.0 6.68e-01 100.0% 84.5%
3538687 214.1.1.1 a+b two layers › SH2 › SH2 › SH2 › SH2 0.79 72.0 6.77e-01 100.0% 86.7%
3509349 214.1.1.9 a+b two layers › SH2 › SH2 › SH2 › DUF7063 0.78 72.0 6.63e-01 100.0% 90.0%
1384885 214.1.1.6 a+b two layers › SH2 › SH2 › SH2 › SH2_2 0.78 62.0 6.29e-01 93.2% 86.4%
3511270 214.1.1.9 a+b two layers › SH2 › SH2 › SH2 › DUF7063 0.77 70.0 6.32e-01 100.0% 82.5%
3219023 214.1.1.0 a+b two layers › SH2 › SH2 › SH2 0.77 70.0 6.73e-01 100.0% 94.0%
3211540 214.1.1.1 a+b two layers › SH2 › SH2 › SH2 › SH2 0.77 70.0 6.31e-01 100.0% 80.8%
3934183 214.1.1.9 a+b two layers › SH2 › SH2 › SH2 › DUF7063 0.77 70.0 6.59e-01 100.0% 94.3%
3248456 214.1.1.1 a+b two layers › SH2 › SH2 › SH2 › SH2 0.77 70.0 6.41e-01 100.0% 78.3%
3597599 214.1.1.0 a+b two layers › SH2 › SH2 › SH2 0.77 68.0 6.53e-01 97.7% 93.0%
2322691 214.1.1.1 a+b two layers › SH2 › SH2 › SH2 › SH2 0.77 69.0 6.20e-01 100.0% 76.2%
3699899 214.1.1.6 a+b two layers › SH2 › SH2 › SH2 › SH2_2 0.77 67.0 6.08e-01 97.7% 77.5%
3892257 214.1.1.1 a+b two layers › SH2 › SH2 › SH2 › SH2 0.76 69.0 6.15e-01 100.0% 77.6%
158833 214.1.1.1 a+b two layers › SH2 › SH2 › SH2 › SH2 0.76 70.0 5.95e-01 100.0% 70.3%
3933294 214.1.1.1 a+b two layers › SH2 › SH2 › SH2 › SH2 0.76 69.0 6.53e-01 100.0% 89.5%
3515938 214.1.1.9 a+b two layers › SH2 › SH2 › SH2 › DUF7063 0.76 69.0 6.42e-01 100.0% 94.5%
3414351 214.1.1.1 a+b two layers › SH2 › SH2 › SH2 › SH2 0.76 65.0 5.07e-01 96.6% 45.7%
3335839 214.1.1.6 a+b two layers › SH2 › SH2 › SH2 › SH2_2 0.76 67.0 6.06e-01 97.7% 75.8%
3628065 214.1.1.0 a+b two layers › SH2 › SH2 › SH2 0.75 67.0 5.54e-01 100.0% 68.1%
3723068 214.1.1.6 a+b two layers › SH2 › SH2 › SH2 › SH2_2 0.75 66.0 5.88e-01 96.6% 72.8%
3940961 214.1.1.0 a+b two layers › SH2 › SH2 › SH2 0.75 68.0 6.43e-01 100.0% 89.5%
3225772 214.1.1.1 a+b two layers › SH2 › SH2 › SH2 › SH2 0.75 68.0 6.21e-01 100.0% 84.3%
3784543 214.1.1.6 a+b two layers › SH2 › SH2 › SH2 › SH2_2 0.75 65.0 6.58e-01 94.3% 97.6%
3793075 214.1.1.1 a+b two layers › SH2 › SH2 › SH2 › SH2 0.75 67.0 5.81e-01 100.0% 80.7%
3241996 214.1.1.0 a+b two layers › SH2 › SH2 › SH2 0.75 68.0 6.30e-01 100.0% 80.0%
3398586 214.1.1.7 a+b two layers › SH2 › SH2 › SH2 › SH2_1 0.73 66.0 5.90e-01 100.0% 81.6%
3528458 214.1.1.0 a+b two layers › SH2 › SH2 › SH2 0.73 66.0 6.32e-01 100.0% 95.0%
3253803 214.1.1.1 a+b two layers › SH2 › SH2 › SH2 › SH2 0.72 63.0 6.29e-01 98.9% 94.4%
3243870 214.1.1.6 a+b two layers › SH2 › SH2 › SH2 › SH2_2 0.72 64.0 5.94e-01 97.7% 83.6%
3246217 214.1.1.1 a+b two layers › SH2 › SH2 › SH2 › SH2 0.71 66.0 5.65e-01 100.0% 82.2%
3243588 2484.1.1.200 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › FTH 0.71 52.0 3.53e-01 78.4% 27.4%
3222053 2484.1.1.200 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › FTH 0.66 49.0 3.63e-01 78.4% 33.8%
3217981 2484.1.1.200 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › FTH 0.61 45.0 3.65e-01 78.4% 57.1%
5059099 241.2.1.0 a+b two layers › Type III secretory system chaperone-like › Frataxin-like › Frataxin-like 0.60 48.0 4.81e-01 98.9% 85.2%
4965206 4221.1.1.3 a+b two layers › YkuJ-like › YkuJ-like › YkuJ-like › PF26008 0.57 43.0 4.70e-01 93.2% 100.0%
3436173 219.1.1.0 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases 0.54 48.0 3.33e-01 100.0% 42.5%
3468148 219.1.1.0 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases 0.54 47.0 3.71e-01 100.0% 56.9%
5025855 319.1.1.4 beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones › ArsA_HSP20 0.53 30.0 3.25e-01 73.9% 65.7%
3928299 10.1.1.17 beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Laminin_G_2 0.52 45.0 3.68e-01 100.0% 81.2%
5078978 5.1.5.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed 0.51 45.0 3.22e-01 97.7% 89.8%
D3 high residues 264-363
PDB
CATH (9)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3hl6A01 3.30.1300.50 Alpha Beta › 2-Layer Sandwich › Pantoate--beta-alanine Ligase; Chain: A,domain 2 › Putative mobile pathogenicity island, N-terminal domain 0.65 44.0 5.04e-01 70.0% 94.6%
3mazA00 3.30.505.10 Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain 0.58 50.0 5.06e-01 95.0% 97.0%
4py5A01 3.30.310.10 Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › TATA-Binding Protein 0.58 36.0 4.12e-01 93.0% 87.5%
1m3qA01 3.30.310.40 Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › 0.55 37.0 3.91e-01 97.0% 78.7%
4d6gA03 2.60.220.10 Mainly Beta › Sandwich › Chondroitinase Ac; Chain A, domain 3 › Polysaccharide lyase family 8-like, C-terminal 0.51 35.0 3.25e-01 70.0% 92.3%
1pz7A00 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.51 40.0 3.34e-01 87.0% 77.1%
4on1A01 2.40.128.470 Mainly Beta › Beta Barrel › Lipocalin › 0.51 36.0 3.26e-01 73.0% 95.7%
2erfA00 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.50 39.0 3.17e-01 86.0% 90.9%
2ntkB00 3.60.20.20 Alpha Beta › 4-Layer Sandwich › Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 › Inosine monophosphate cyclohydrolase-like 0.50 42.0 3.43e-01 96.0% 83.2%
ECOD (6)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5059099 241.2.1.0 a+b two layers › Type III secretory system chaperone-like › Frataxin-like › Frataxin-like 0.66 52.0 5.51e-01 99.0% 95.5%
3586827 274.1.1.25 a+b two layers › Pili subunits › Pili subunits › Pili subunits › ComGF 0.57 35.0 3.37e-01 89.0% 52.2%
3229460 10.1.1.91 beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › PF29324 0.56 44.0 3.50e-01 87.0% 75.0%
3256259 5.1.4.1 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 0.52 45.0 3.10e-01 97.0% 76.1%
3463325 219.1.1.0 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases 0.52 39.0 2.93e-01 81.0% 96.5%
4092565 71.1.1.3 beta meanders › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › LolB 0.50 39.0 3.28e-01 83.0% 82.4%