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hypothetical_protein_KM759_gp094

Euk-Vir

Lymphocystis_disease_virus_4

hypothetical_protein_KM759_gp094__YP_010087967__Lymphocystis_disease_virus_4__2704413

Identity

Accession:
YP_010087967 ↗
Protein ID:
hypothetical_protein_KM759_gp094
Kingdom:
euk

Quality

73.6 mean pLDDT

Taxonomy

Bamfordvirae› Nucleocytoviricota› Megaviricetes› Pimascovirales› Iridoviridae› Lymphocystivirus› Lymphocystis_disease_virus_4

TaxID: 2704413

Cluster

View cluster (33 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 10-96
PDB
Domain cluster: rep: IMGVR_UViG_3300002182_000326-3300002182-JGI24721J26819_100053532__D50-123
CATH (77)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2g3wA00 3.10.640.10 Alpha Beta › Roll › Restriction endonuclease-like alpha-beta roll fold › Restriction endonuclease-like alpha-beta roll domain 0.70 62.0 4.95e-01 100.0% 76.0%
1xmxA02 3.40.1350.10 Alpha Beta › 3-Layer(aba) Sandwich › Trna Endonuclease; Chain: A, domain 1 › 0.69 61.0 5.13e-01 100.0% 79.2%
2vldA02 3.40.1350.10 Alpha Beta › 3-Layer(aba) Sandwich › Trna Endonuclease; Chain: A, domain 1 › 0.69 60.0 5.62e-01 97.7% 94.5%
1fdrA02 3.40.50.80 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Nucleotide-binding domain of ferredoxin-NADP reductase (FNR) module 0.69 48.0 4.03e-01 73.6% 60.5%
1y88A01 3.40.1350.10 Alpha Beta › 3-Layer(aba) Sandwich › Trna Endonuclease; Chain: A, domain 1 › 0.68 61.0 5.43e-01 100.0% 90.4%
3vpxB02 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.68 61.0 4.67e-01 100.0% 70.4%
4xcvA02 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.68 60.0 4.72e-01 100.0% 99.5%
5gudA03 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.67 60.0 4.88e-01 100.0% 99.4%
1wd5A01 3.40.50.2020 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.66 57.0 4.88e-01 97.7% 74.0%
4dadA01 3.40.50.2300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator 0.66 57.0 5.11e-01 100.0% 75.8%
1a04A01 3.40.50.2300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator 0.65 57.0 5.14e-01 100.0% 78.2%
4njmA02 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.65 58.0 4.71e-01 100.0% 97.6%
5j60B02 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.65 48.0 4.29e-01 77.0% 80.0%
1q6oB00 3.20.20.70 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I 0.65 57.0 4.35e-01 100.0% 86.0%
3cfyA00 3.40.50.2300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator 0.65 57.0 5.04e-01 100.0% 72.3%
2x5oA01 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.64 42.0 4.20e-01 70.1% 63.0%
1p90A00 3.30.420.130 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Dinitrogenase iron-molybdenum cofactor biosynthesis domain 0.64 44.0 3.90e-01 70.1% 83.7%
4ehiA02 3.40.140.20 Alpha Beta › 3-Layer(aba) Sandwich › Cytidine Deaminase; domain 2 › AICAR transformylase, duplication domain 0.64 56.0 4.63e-01 98.9% 80.8%
1to6A01 3.40.50.10350 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Glycerate kinase; domain 1 0.63 56.0 4.80e-01 100.0% 78.2%
2pl1A00 3.40.50.2300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator 0.63 54.0 4.98e-01 100.0% 80.0%
3i6sA03 3.50.30.30 Alpha Beta › 3-Layer(bba) Sandwich › Glucose Oxidase; domain 1 › 0.63 51.0 4.53e-01 90.8% 79.2%
3dfzB01 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.63 42.0 3.75e-01 70.1% 47.2%
3gl9A00 3.40.50.2300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator 0.63 55.0 5.01e-01 100.0% 80.0%
3ou2A00 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.63 55.0 4.26e-01 100.0% 82.4%
7e52A01 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.63 47.0 4.14e-01 79.3% 81.2%
3snkA00 3.40.50.2300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator 0.63 54.0 4.96e-01 100.0% 80.7%
3khtA00 3.40.50.2300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator 0.62 54.0 4.78e-01 100.0% 79.5%
2a4kB01 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.62 53.0 4.23e-01 100.0% 81.6%
3uj9A00 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.62 54.0 3.95e-01 100.0% 69.8%
5nusA00 3.40.50.410 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › von Willebrand factor, type A domain 0.62 53.0 4.12e-01 100.0% 82.9%
2d0iA02 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.62 53.0 4.23e-01 100.0% 98.4%
5c3uA02 3.40.50.1100 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.62 43.0 4.19e-01 72.4% 80.2%
4lg1B00 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.61 53.0 4.10e-01 100.0% 92.0%
1a3wA01 3.40.1380.20 Alpha Beta › 3-Layer(aba) Sandwich › Pyruvate Kinase; Chain: A, domain 1 › Pyruvate kinase, C-terminal domain 0.61 43.0 3.57e-01 72.4% 54.2%
7oo1A02 3.40.1380.20 Alpha Beta › 3-Layer(aba) Sandwich › Pyruvate Kinase; Chain: A, domain 1 › Pyruvate kinase, C-terminal domain 0.61 42.0 3.85e-01 71.3% 69.5%
2g1uA00 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.61 52.0 4.58e-01 98.9% 82.5%
3iv6A01 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.61 53.0 4.20e-01 100.0% 83.9%
4n49A00 3.40.50.12760 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.61 53.0 3.48e-01 100.0% 51.0%
4fx5A02 3.40.50.410 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › von Willebrand factor, type A domain 0.61 51.0 4.18e-01 100.0% 81.0%
5cvdB00 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.61 54.0 4.01e-01 100.0% 80.1%
1qyrA01 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.60 52.0 4.20e-01 100.0% 92.9%
3u62A02 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.60 50.0 4.45e-01 93.1% 100.0%
1zkpC00 3.60.15.10 Alpha Beta › 4-Layer Sandwich › Metallo-beta-lactamase; Chain A › Ribonuclease Z/Hydroxyacylglutathione hydrolase-like 0.60 51.0 3.81e-01 98.9% 94.7%
2i99A02 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.60 51.0 4.25e-01 98.9% 92.6%
2qvgA00 3.40.50.2300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator 0.60 51.0 4.59e-01 100.0% 81.2%
2e28A03 3.40.1380.20 Alpha Beta › 3-Layer(aba) Sandwich › Pyruvate Kinase; Chain: A, domain 1 › Pyruvate kinase, C-terminal domain 0.60 41.0 3.63e-01 72.4% 63.0%
3n75A01 3.40.50.2300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator 0.60 51.0 4.57e-01 100.0% 72.9%
3qtgA03 3.40.1380.20 Alpha Beta › 3-Layer(aba) Sandwich › Pyruvate Kinase; Chain: A, domain 1 › Pyruvate kinase, C-terminal domain 0.59 41.0 3.81e-01 72.4% 66.1%
4gvlA01 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.58 48.0 4.23e-01 94.3% 78.7%
7l6lC01 3.40.50.1360 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.58 48.0 3.88e-01 92.0% 97.7%
4iscA00 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.58 50.0 4.24e-01 100.0% 96.8%
1e0tA01 3.40.1380.20 Alpha Beta › 3-Layer(aba) Sandwich › Pyruvate Kinase; Chain: A, domain 1 › Pyruvate kinase, C-terminal domain 0.58 40.0 3.69e-01 73.6% 66.7%
1xtpA01 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.58 49.0 3.82e-01 98.9% 86.0%
1yvuA03 3.40.50.2300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator 0.58 50.0 4.14e-01 100.0% 53.5%
6mprB01 3.40.1080.10 Alpha Beta › 3-Layer(aba) Sandwich › Glutaconate Coenzyme A-transferase › Glutaconate Coenzyme A-transferase 0.58 43.0 3.28e-01 79.3% 58.8%
1a97B00 3.40.50.2020 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.57 50.0 4.26e-01 100.0% 79.7%
3tkaA01 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.57 49.0 3.94e-01 100.0% 95.7%
1poiA01 3.40.1080.10 Alpha Beta › 3-Layer(aba) Sandwich › Glutaconate Coenzyme A-transferase › Glutaconate Coenzyme A-transferase 0.57 39.0 2.85e-01 72.4% 34.5%
2v3aA02 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.56 49.0 4.25e-01 97.7% 80.7%
1k6dB00 3.40.1080.10 Alpha Beta › 3-Layer(aba) Sandwich › Glutaconate Coenzyme A-transferase › Glutaconate Coenzyme A-transferase 0.56 43.0 3.25e-01 82.8% 58.0%
2r3bA01 3.40.1190.20 Alpha Beta › 3-Layer(aba) Sandwich › UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase › Ribokinase 0.56 48.0 3.50e-01 100.0% 64.0%
3n28A01 3.40.50.1000 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HAD superfamily/HAD-like 0.55 47.0 4.01e-01 100.0% 95.5%
3f8dA02 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.55 47.0 4.24e-01 96.6% 85.4%
2fywA01 3.40.1390.30 Alpha Beta › 3-Layer(aba) Sandwich › Udp-n-acetylmuramoylalanyl-d-glutamate--2,6- Diaminopimelate Ligase; Chain: A, domain 1 › NIF3 (NGG1p interacting factor 3)-like 0.54 44.0 3.85e-01 88.5% 73.8%
1a49A01 3.40.1380.20 Alpha Beta › 3-Layer(aba) Sandwich › Pyruvate Kinase; Chain: A, domain 1 › Pyruvate kinase, C-terminal domain 0.54 41.0 3.37e-01 85.1% 64.2%
1k1eD00 3.40.50.1000 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HAD superfamily/HAD-like 0.54 45.0 3.79e-01 100.0% 67.1%
2be7A01 3.40.50.1370 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Aspartate/ornithine carbamoyltransferase 0.54 44.0 3.79e-01 97.7% 54.3%
3e0vB01 3.40.1380.20 Alpha Beta › 3-Layer(aba) Sandwich › Pyruvate Kinase; Chain: A, domain 1 › Pyruvate kinase, C-terminal domain 0.54 41.0 3.45e-01 85.1% 68.9%
3eoeD01 3.40.1380.20 Alpha Beta › 3-Layer(aba) Sandwich › Pyruvate Kinase; Chain: A, domain 1 › Pyruvate kinase, C-terminal domain 0.53 41.0 3.62e-01 85.1% 72.3%
2p7iA00 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.53 46.0 3.49e-01 100.0% 95.1%
5aj3K00 3.30.420.80 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribosomal protein S11/S14 0.52 44.0 3.87e-01 95.4% 83.8%
3rd5A00 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.52 44.0 3.21e-01 98.9% 79.9%
1vq8O00 3.100.10.10 Alpha Beta › Ribosomal Protein L15; Chain: K; domain 2 › Ribosomal Protein L15; Chain: K; domain 2 › 0.52 46.0 4.21e-01 100.0% 76.5%
5kxhA02 3.40.50.11350 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.52 44.0 3.70e-01 100.0% 75.3%
3l8kA02 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.51 44.0 3.94e-01 96.6% 87.1%
1kyqB01 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.51 43.0 3.72e-01 100.0% 86.6%
2r7kA01 3.40.50.20 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.50 37.0 3.49e-01 80.5% 63.1%
ECOD (82)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4944009 2008.1.1.0 ↗ a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like 0.76 70.0 6.55e-01 100.0% 99.0%
3333727 2008.3.1.1 ↗ a/b three-layered sandwiches › Restriction endonuclease-like › Eukaryotic RPB5 N-terminal domain › Eukaryotic RPB5 N-terminal domain › RNA_pol_Rpb5_N 0.75 62.0 5.77e-01 89.7% 98.2%
5000631 2008.1.1.16 ↗ a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › Mrr_cat 0.74 66.0 6.02e-01 100.0% 87.8%
5000381 2008.1.1.16 ↗ a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › Mrr_cat 0.73 66.0 5.84e-01 100.0% 88.8%
5070502 2008.1.1.0 ↗ a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like 0.73 65.0 5.49e-01 100.0% 94.5%
4953911 2008.1.1.16 ↗ a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › Mrr_cat 0.72 65.0 5.95e-01 100.0% 94.8%
4963007 2008.1.1.16 ↗ a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › Mrr_cat 0.72 64.0 5.29e-01 98.9% 78.1%
5055610 2008.1.1.16 ↗ a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › Mrr_cat 0.72 65.0 5.59e-01 100.0% 89.6%
4993521 2008.1.1.0 ↗ a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like 0.71 64.0 5.77e-01 100.0% 95.0%
5057822 2008.1.1.16 ↗ a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › Mrr_cat 0.71 63.0 5.36e-01 100.0% 81.4%
5057130 2008.1.1.16 ↗ a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › Mrr_cat 0.70 64.0 5.64e-01 100.0% 83.2%
4958431 2008.1.1.0 ↗ a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like 0.70 62.0 5.66e-01 97.7% 93.0%
3741057 7573.1.1.4 ↗ a/b three-layered sandwiches › PRTase-like › PRTase-like › PRTase-like › UPRTase 0.70 62.0 4.82e-01 97.7% 68.3%
4930769 2008.1.1.0 ↗ a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like 0.70 63.0 5.93e-01 100.0% 84.8%
5003652 2008.1.1.0 ↗ a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like 0.69 61.0 5.59e-01 98.9% 93.0%
4977513 2008.1.1.16 ↗ a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › Mrr_cat 0.69 61.0 5.08e-01 100.0% 79.4%
3458702 2003.1.5.0 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases 0.69 48.0 4.49e-01 73.6% 67.3%
4010728 2008.1.1.87 ↗ a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › YhcG_C 0.68 61.0 5.28e-01 100.0% 98.5%
4973776 2008.1.1.16 ↗ a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › Mrr_cat 0.67 61.0 5.06e-01 100.0% 86.7%
5021928 2008.1.1.87 ↗ a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › YhcG_C 0.67 60.0 4.92e-01 100.0% 83.1%
5035528 2008.1.1.5 ↗ a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › NucS_C 0.67 60.0 5.35e-01 100.0% 80.8%
4933191 2008.1.1.220 ↗ a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › PDDEXK_10 0.67 59.0 4.92e-01 97.7% 86.0%
4055019 2003.1.2.1 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › Pyr_redox 0.66 48.0 3.80e-01 77.0% 59.4%
5063787 2008.1.1.5 ↗ a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › NucS_C 0.66 58.0 5.20e-01 100.0% 88.0%
4957529 7573.1.1.1 ↗ a/b three-layered sandwiches › PRTase-like › PRTase-like › PRTase-like › Pribosyltran 0.65 56.0 4.30e-01 97.7% 81.9%
5075326 2003.4.1.1 ↗ a/b three-layered sandwiches › Rossmann-like › Tryptophan synthase beta subunit-like PLP-dependent enzymes › Tryptophan synthase beta subunit-like PLP-dependent enzymes › PALP 0.64 45.0 3.75e-01 72.4% 50.7%
3221737 207.1.1.0 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats 0.64 46.0 3.29e-01 78.2% 44.6%
4033332 7512.1.1.15 ↗ a/b three-layered sandwiches › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › Glyphos_transf 0.63 49.0 3.72e-01 100.0% 34.4%
4219668 2003.1.1.0 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains 0.63 54.0 3.93e-01 97.7% 52.2%
3542046 2003.1.1.11 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains › 3Beta_HSD 0.63 53.0 3.63e-01 100.0% 59.7%
None — 0.62 53.0 3.60e-01 100.0% 59.5%
4942884 2003.1.5.82 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_31 0.62 54.0 4.05e-01 100.0% 87.3%
3183984 2003.1.5.81 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_25 0.61 53.0 4.00e-01 100.0% 88.9%
3481491 7518.1.1.1 ↗ a/b three-layered sandwiches › PK C-terminal domain-like › PK C-terminal domain-like › PK C-terminal domain-like › PK_C 0.61 42.0 3.60e-01 72.4% 56.0%
2627900 7518.1.1.1 ↗ a/b three-layered sandwiches › PK C-terminal domain-like › PK C-terminal domain-like › PK C-terminal domain-like › PK_C 0.61 43.0 3.75e-01 73.6% 62.2%
2588722 7518.1.1.1 ↗ a/b three-layered sandwiches › PK C-terminal domain-like › PK C-terminal domain-like › PK C-terminal domain-like › PK_C 0.61 43.0 3.66e-01 72.4% 58.0%
3261456 7518.1.1.1 ↗ a/b three-layered sandwiches › PK C-terminal domain-like › PK C-terminal domain-like › PK C-terminal domain-like › PK_C 0.61 42.0 3.71e-01 72.4% 57.8%
4475633 2003.1.5.68 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › MTS_N 0.61 52.0 4.40e-01 100.0% 86.9%
2527184 7518.1.1.1 ↗ a/b three-layered sandwiches › PK C-terminal domain-like › PK C-terminal domain-like › PK C-terminal domain-like › PK_C 0.61 42.0 3.65e-01 72.4% 57.9%
3599286 7518.1.1.0 ↗ a/b three-layered sandwiches › PK C-terminal domain-like › PK C-terminal domain-like › PK C-terminal domain-like 0.61 42.0 3.71e-01 72.4% 61.5%
5065170 2003.1.5.42 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_21 0.60 52.0 4.15e-01 100.0% 93.7%
5050006 7518.1.1.1 ↗ a/b three-layered sandwiches › PK C-terminal domain-like › PK C-terminal domain-like › PK C-terminal domain-like › PK_C 0.60 42.0 3.61e-01 72.4% 64.3%
4150036 7518.1.1.1 ↗ a/b three-layered sandwiches › PK C-terminal domain-like › PK C-terminal domain-like › PK C-terminal domain-like › PK_C 0.60 42.0 3.64e-01 72.4% 63.4%
4972566 7518.1.1.1 ↗ a/b three-layered sandwiches › PK C-terminal domain-like › PK C-terminal domain-like › PK C-terminal domain-like › PK_C 0.60 41.0 3.77e-01 72.4% 64.2%
4024861 2003.1.5.82 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_31 0.60 51.0 3.72e-01 100.0% 77.5%
3500538 7518.1.1.1 ↗ a/b three-layered sandwiches › PK C-terminal domain-like › PK C-terminal domain-like › PK C-terminal domain-like › PK_C 0.60 42.0 3.65e-01 73.6% 62.3%
3693867 2003.1.5.66 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_11 0.60 51.0 3.84e-01 100.0% 68.8%
5059951 7518.1.1.1 ↗ a/b three-layered sandwiches › PK C-terminal domain-like › PK C-terminal domain-like › PK C-terminal domain-like › PK_C 0.60 41.0 3.72e-01 72.4% 71.2%
4888031 2003.1.5.79 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_23 0.60 47.0 3.78e-01 88.5% 90.4%
4238751 7518.1.1.1 ↗ a/b three-layered sandwiches › PK C-terminal domain-like › PK C-terminal domain-like › PK C-terminal domain-like › PK_C 0.59 42.0 3.70e-01 73.6% 63.8%
4143583 2003.1.5.2 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › RrnaAD 0.59 50.0 4.00e-01 100.0% 83.0%
5043418 2003.1.5.2 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › RrnaAD 0.59 51.0 4.04e-01 100.0% 82.1%
1517806 7518.1.1.1 ↗ a/b three-layered sandwiches › PK C-terminal domain-like › PK C-terminal domain-like › PK C-terminal domain-like › PK_C 0.59 41.0 3.67e-01 72.4% 62.2%
4166335 7573.1.1.1 ↗ a/b three-layered sandwiches › PRTase-like › PRTase-like › PRTase-like › Pribosyltran 0.59 50.0 4.18e-01 98.9% 75.2%
3283914 2003.1.5.66 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_11 0.59 51.0 4.07e-01 100.0% 87.3%
4152192 7518.1.1.0 ↗ a/b three-layered sandwiches › PK C-terminal domain-like › PK C-terminal domain-like › PK C-terminal domain-like 0.59 40.0 3.72e-01 72.4% 65.8%
3657635 7518.1.1.1 ↗ a/b three-layered sandwiches › PK C-terminal domain-like › PK C-terminal domain-like › PK C-terminal domain-like › PK_C 0.59 40.0 3.78e-01 72.4% 72.2%
5072345 2003.1.5.42 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_21 0.59 51.0 3.91e-01 100.0% 95.3%
4998635 7518.1.1.1 ↗ a/b three-layered sandwiches › PK C-terminal domain-like › PK C-terminal domain-like › PK C-terminal domain-like › PK_C 0.58 40.0 3.60e-01 72.4% 67.7%
4408656 2003.1.5.53 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › tRNA_U5-meth_tr 0.58 51.0 3.54e-01 100.0% 49.5%
3197996 207.1.1.0 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats 0.58 43.0 3.59e-01 79.3% 76.2%
2138693 7518.1.1.1 ↗ a/b three-layered sandwiches › PK C-terminal domain-like › PK C-terminal domain-like › PK C-terminal domain-like › PK_C 0.58 41.0 3.60e-01 73.6% 60.7%
4959227 7518.1.1.1 ↗ a/b three-layered sandwiches › PK C-terminal domain-like › PK C-terminal domain-like › PK C-terminal domain-like › PK_C 0.58 40.0 3.63e-01 73.6% 63.1%
3229484 7516.1.1.78 ↗ a/b three-layered sandwiches › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › DUF1647 0.58 51.0 3.42e-01 100.0% 25.4%
3600856 7518.1.1.0 ↗ a/b three-layered sandwiches › PK C-terminal domain-like › PK C-terminal domain-like › PK C-terminal domain-like 0.58 40.0 3.58e-01 73.6% 61.9%
3056597 7518.1.1.1 ↗ a/b three-layered sandwiches › PK C-terminal domain-like › PK C-terminal domain-like › PK C-terminal domain-like › PK_C 0.58 40.0 3.61e-01 72.4% 65.1%
4944121 7518.1.1.0 ↗ a/b three-layered sandwiches › PK C-terminal domain-like › PK C-terminal domain-like › PK C-terminal domain-like 0.57 40.0 3.56e-01 73.6% 61.7%
3731170 2003.1.5.67 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_12 0.57 49.0 3.61e-01 100.0% 85.2%
4963544 7518.1.1.1 ↗ a/b three-layered sandwiches › PK C-terminal domain-like › PK C-terminal domain-like › PK C-terminal domain-like › PK_C 0.56 39.0 3.52e-01 73.6% 63.1%
3899850 2003.1.5.66 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_11 0.56 47.0 3.67e-01 98.9% 82.3%
3829612 7512.1.1.0 ↗ a/b three-layered sandwiches › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase 0.56 48.0 3.47e-01 100.0% 55.6%
3514016 7516.1.1.78 ↗ a/b three-layered sandwiches › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › DUF1647 0.56 50.0 3.55e-01 100.0% 33.8%
3996587 7516.1.1.78 ↗ a/b three-layered sandwiches › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › DUF1647 0.55 50.0 3.41e-01 100.0% 29.8%
3938127 7516.1.1.78 ↗ a/b three-layered sandwiches › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › DUF1647 0.55 50.0 3.26e-01 100.0% 23.6%
4927531 2003.1.5.8 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Ubie_methyltran 0.55 46.0 3.59e-01 100.0% 87.3%
9433 2003.1.7.3 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NagB/RpiA/CoA transferase-like › CoA_trans 0.54 45.0 3.13e-01 94.3% 89.3%
2603883 7514.1.1.2 ↗ a/b three-layered sandwiches › Ferredoxin reductase-like, C-terminal NADP-linked domain › Ferredoxin reductase-like, C-terminal NADP-linked domain › Ferredoxin reductase-like, C-terminal NADP-linked domain › SIP 0.54 44.0 3.79e-01 92.0% 86.8%
None — 0.54 44.0 3.83e-01 94.3% 64.8%
9390 2003.1.5.79 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_23 0.53 46.0 3.49e-01 100.0% 95.1%
4937871 2490.3.1.1 ↗ a/b three-layered sandwiches › Ribosomal protein L13/L15p/L18e/L32e › Ribosomal proteins L15p and L18e › Ribosomal proteins L15p and L18e › Ribosomal_L27A 0.52 46.0 4.25e-01 100.0% 76.4%
4676087 2003.1.2.30 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › Pyr_redox_3 0.52 45.0 4.05e-01 100.0% 81.6%
4975672 2003.1.1.65 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains › NAD_binding_7 0.51 43.0 3.72e-01 98.9% 80.7%
D2 high residues 104-154
PDB
Domain cluster: representative
CATH (11)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1dzfA02 3.90.940.20 Alpha Beta › Alpha-Beta Complex › Eukaryotic RPB6 RNA polymerase subunit › RPB5-like RNA polymerase subunit 0.82 75.0 6.57e-01 100.0% 87.7%
1y8xB00 3.10.290.20 Alpha Beta › Roll › Structural Genomics Hypothetical 15.5 Kd Protein In mrcA-pckA Intergenic Region; Chain A › Ubiquitin-like 2 activating enzyme e1b. Chain: B, domain 3 0.62 43.0 3.59e-01 74.5% 96.7%
1qklA00 3.90.940.10 Alpha Beta › Alpha-Beta Complex › Eukaryotic RPB6 RNA polymerase subunit › RNA polymerase subunit, RPB6/omega 0.61 51.0 3.94e-01 100.0% 69.3%
4fdaA00 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.58 40.0 2.55e-01 100.0% 15.2%
1f9qD00 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.56 36.0 3.39e-01 100.0% 51.5%
6lcqA00 3.30.30.10 Alpha Beta › 2-Layer Sandwich › Defensin A-like › Knottin, scorpion toxin-like 0.53 32.0 3.22e-01 90.2% 55.6%
2ehzA01 3.10.180.10 Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1 0.51 41.0 3.22e-01 100.0% 80.7%
4i1kA00 2.40.330.10 Mainly Beta › Beta Barrel › At1g16640 B3 domain › DNA-binding pseudobarrel domain 0.51 38.0 3.00e-01 80.4% 92.4%
5vybA00 3.10.100.10 Alpha Beta › Roll › Mannose-Binding Protein A; Chain A › Mannose-Binding Protein A, subunit A 0.51 37.0 2.91e-01 88.2% 86.0%
3m4uB00 3.90.190.10 Alpha Beta › Alpha-Beta Complex › Protein-Tyrosine Phosphatase; Chain A › Protein tyrosine phosphatase superfamily 0.51 45.0 2.79e-01 100.0% 28.6%
1l9nA03 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.50 44.0 3.42e-01 100.0% 64.9%
ECOD (17)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3607644 840.1.1.1 ↗ a+b two layers › RPB5-like RNA polymerase subunit › RPB5-like RNA polymerase subunit › RPB5-like RNA polymerase subunit › RNA_pol_Rpb5_C 0.86 79.0 6.85e-01 100.0% 86.5%
3596039 840.1.1.0 ↗ a+b two layers › RPB5-like RNA polymerase subunit › RPB5-like RNA polymerase subunit › RPB5-like RNA polymerase subunit 0.85 78.0 6.93e-01 100.0% 91.4%
3824571 840.1.1.1 ↗ a+b two layers › RPB5-like RNA polymerase subunit › RPB5-like RNA polymerase subunit › RPB5-like RNA polymerase subunit › RNA_pol_Rpb5_C 0.85 78.0 6.76e-01 100.0% 85.3%
4838977 840.1.1.1 ↗ a+b two layers › RPB5-like RNA polymerase subunit › RPB5-like RNA polymerase subunit › RPB5-like RNA polymerase subunit › RNA_pol_Rpb5_C 0.83 76.0 6.55e-01 100.0% 84.2%
4861748 840.1.1.1 ↗ a+b two layers › RPB5-like RNA polymerase subunit › RPB5-like RNA polymerase subunit › RPB5-like RNA polymerase subunit › RNA_pol_Rpb5_C 0.82 73.0 6.55e-01 100.0% 90.1%
4600910 840.1.1.0 ↗ a+b two layers › RPB5-like RNA polymerase subunit › RPB5-like RNA polymerase subunit › RPB5-like RNA polymerase subunit 0.81 72.0 6.49e-01 100.0% 94.3%
3033324 840.1.1.1 ↗ a+b two layers › RPB5-like RNA polymerase subunit › RPB5-like RNA polymerase subunit › RPB5-like RNA polymerase subunit › RNA_pol_Rpb5_C 0.78 68.0 6.14e-01 100.0% 88.9%
3582420 2.6.1.1 ↗ beta barrels › OB-fold › Staphylococcal nuclease › Staphylococcal nuclease › SNase 0.64 35.0 2.47e-01 94.1% 15.3%
4982935 1.1.2.0 ↗ beta barrels › cradle loop barrel › RIFT-related › double psi 0.61 52.0 4.11e-01 100.0% 70.8%
5043595 1.1.2.0 ↗ beta barrels › cradle loop barrel › RIFT-related › double psi 0.61 52.0 4.05e-01 100.0% 66.1%
3520019 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.61 41.0 3.97e-01 100.0% 61.7%
3812427 376.1.3.42 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger › C1-like_CT 0.57 44.0 4.70e-01 100.0% 95.6%
3520265 1.1.13.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins 0.57 48.0 3.53e-01 98.0% 69.0%
3829735 3422.1.1.0 ↗ a+b two layers › TEN domain of telomerase reverse transcriptase › TEN domain of telomerase reverse transcriptase › TEN domain of telomerase reverse transcriptase 0.53 43.0 3.16e-01 100.0% 63.5%
3212293 209.1.1.14 ↗ a+b complex topology › C-type lectin-like › C-type lectin-like › C-type lectin-like › PF29411 0.53 45.0 3.13e-01 100.0% 42.2%
5077135 1.1.2.0 ↗ beta barrels › cradle loop barrel › RIFT-related › double psi 0.53 42.0 3.44e-01 100.0% 68.7%
4139691 244.1.1.3 ↗ a+b two layers › FAD-linked reductases, C-terminal domain-like › FAD-linked reductases-C › FAD-linked reductases-C › GIDA 0.51 40.0 3.02e-01 98.0% 80.0%