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hypothetical_protein_KM759_gp141
Euk-VirLymphocystis_disease_virus_4
hypothetical_protein_KM759_gp141__YP_010088014__Lymphocystis_disease_virus_4__2704413
Identity
- Accession:
- YP_010088014 ↗
- Protein ID:
- hypothetical_protein_KM759_gp141
- Kingdom:
- euk
Quality
73.3
mean pLDDT
Taxonomy
Bamfordvirae›
Nucleocytoviricota›
Megaviricetes›
Pimascovirales›
Iridoviridae›
Lymphocystivirus›
Lymphocystis_disease_virus_4
TaxID: 2704413
Cluster
View cluster (48 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
medium
residues 1-245_337-384
Domain cluster:
rep: papain-like_proteinase__YP_009021135__Anopheles_minimus_iridovirus__1465751__D58-425
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF00112.30 best | Peptidase_C1 | 46.0 | 9.50e-12 | 65.2% | 48.6% |
CATH (8)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1jqpA02 | 3.90.70.10 | Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases | 0.67 | 51.0 | 5.82e-01 | 81.2% | 100.0% |
| 5fpwA00 | 3.90.70.10 | Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases | 0.66 | 60.0 | 6.03e-01 | 93.5% | 100.0% |
| 3pw3D00 | 3.90.70.10 | Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases | 0.65 | 51.0 | 4.73e-01 | 78.8% | 94.6% |
| 2wbfX00 | 3.90.70.10 | Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases | 0.64 | 51.0 | 5.41e-01 | 81.2% | 98.1% |
| 5egwA00 | 3.90.70.10 | Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases | 0.64 | 55.0 | 5.07e-01 | 93.9% | 71.3% |
| 1deuB00 | 3.90.70.10 | Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases | 0.64 | 55.0 | 5.88e-01 | 93.5% | 99.6% |
| 6u26A01 | 3.30.70.80 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Peptidase S8 propeptide/proteinase inhibitor I9 | 0.56 | 16.0 | 2.91e-01 | 86.7% | 78.4% |
| 2ek0A00 | 3.30.110.20 | Alpha Beta › 2-Layer Sandwich › Translation Initiation Factor IF3 › Alba-like domain | 0.53 | 18.0 | 3.14e-01 | 93.2% | 93.3% |
ECOD (45)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4770613 | 219.1.1.1 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Peptidase_C1 | 0.84 | 46.0 | 6.36e-01 | 71.7% | 99.4% |
| 3706458 | 219.1.1.1 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Peptidase_C1 | 0.82 | 49.0 | 6.38e-01 | 83.3% | 99.4% |
| 3426348 | 219.1.1.1 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Peptidase_C1 | 0.80 | 47.0 | 6.22e-01 | 80.5% | 100.0% |
| 4970459 | 219.1.1.1 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Peptidase_C1 | 0.76 | 53.0 | 6.23e-01 | 88.4% | 96.3% |
| 3993857 | 219.1.1.1 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Peptidase_C1 | 0.73 | 64.0 | 6.30e-01 | 91.5% | 92.1% |
| 3234755 | 219.1.1.1 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Peptidase_C1 | 0.71 | 55.0 | 6.22e-01 | 91.1% | 100.0% |
| 3519107 | 219.1.1.1 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Peptidase_C1 | 0.69 | 62.0 | 5.91e-01 | 93.9% | 89.1% |
| 3395889 | 219.1.1.2 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Peptidase_C1,Propeptide_C1 | 0.68 | 62.0 | 6.01e-01 | 93.5% | 99.7% |
| 3479869 | 219.1.1.0 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases | 0.68 | 62.0 | 5.96e-01 | 93.9% | 89.5% |
| 4391291 | 219.1.1.1 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Peptidase_C1 | 0.68 | 54.0 | 6.02e-01 | 92.5% | 100.0% |
| 4377695 | 219.1.1.2 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Peptidase_C1,Propeptide_C1 | 0.67 | 61.0 | 5.94e-01 | 93.2% | 99.0% |
| 3940207 | 219.1.1.1 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Peptidase_C1 | 0.67 | 55.0 | 6.04e-01 | 91.8% | 100.0% |
| 5034502 | 219.1.1.1 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Peptidase_C1 | 0.67 | 51.0 | 5.81e-01 | 81.6% | 100.0% |
| 4627786 | 219.1.1.0 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases | 0.67 | 51.0 | 5.18e-01 | 92.2% | 78.5% |
| 3489030 | 219.1.1.1 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Peptidase_C1 | 0.67 | 61.0 | 5.97e-01 | 93.5% | 90.0% |
| 4127832 | 219.1.1.0 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases | 0.67 | 55.0 | 5.50e-01 | 94.2% | 82.7% |
| 3574164 | 219.1.1.1 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Peptidase_C1 | 0.67 | 40.0 | 5.20e-01 | 78.2% | 100.0% |
| 3676121 | 219.1.1.1 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Peptidase_C1 | 0.66 | 48.0 | 5.65e-01 | 78.5% | 100.0% |
| 4053732 | 219.1.1.1 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Peptidase_C1 | 0.66 | 55.0 | 5.38e-01 | 93.2% | 79.0% |
| 3567565 | 219.1.1.1 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Peptidase_C1 | 0.66 | 54.0 | 5.50e-01 | 92.5% | 84.5% |
| 3998812 | 219.1.1.1 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Peptidase_C1 | 0.65 | 60.0 | 5.62e-01 | 93.9% | 96.8% |
| None | — | 0.65 | 54.0 | 5.23e-01 | 94.2% | 76.3% | |
| 3261680 | 219.1.1.1 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Peptidase_C1 | 0.65 | 59.0 | 6.01e-01 | 93.5% | 100.0% |
| 3798944 | 219.1.1.1 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Peptidase_C1 | 0.65 | 54.0 | 5.85e-01 | 91.8% | 100.0% |
| 3564430 | 219.1.1.1 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Peptidase_C1 | 0.65 | 59.0 | 5.71e-01 | 93.9% | 99.4% |
| 3629255 | 219.1.1.0 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases | 0.64 | 53.0 | 5.23e-01 | 92.5% | 80.3% |
| 3216614 | 219.1.1.1 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Peptidase_C1 | 0.64 | 59.0 | 5.64e-01 | 93.9% | 85.5% |
| 3938586 | 219.1.1.1 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Peptidase_C1 | 0.64 | 55.0 | 5.91e-01 | 93.5% | 100.0% |
| None | — | 0.64 | 52.0 | 5.40e-01 | 92.2% | 88.7% | |
| 3891882 | 219.1.1.1 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Peptidase_C1 | 0.64 | 57.0 | 5.86e-01 | 92.5% | 96.1% |
| 4960361 | 219.1.1.1 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Peptidase_C1 | 0.63 | 56.0 | 5.76e-01 | 92.2% | 98.2% |
| 3865831 | 219.1.1.0 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases | 0.62 | 55.0 | 5.35e-01 | 93.5% | 82.5% |
| 3248099 | 219.1.1.0 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases | 0.62 | 53.0 | 5.14e-01 | 92.8% | 79.9% |
| None | — | 0.62 | 55.0 | 5.26e-01 | 95.2% | 80.6% | |
| 4978305 | 219.1.1.1 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Peptidase_C1 | 0.62 | 55.0 | 5.49e-01 | 93.5% | 90.5% |
| 3486878 | 219.1.1.110 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Peptidase_C1, Peptidase_C1_2 | 0.61 | 56.0 | 5.45e-01 | 93.9% | 100.0% |
| 3497089 | 219.1.1.0 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases | 0.61 | 55.0 | 5.47e-01 | 93.2% | 89.5% |
| 4024611 | 219.1.1.0 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases | 0.61 | 55.0 | 5.11e-01 | 93.2% | 80.8% |
| 4024702 | 219.1.1.1 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Peptidase_C1 | 0.61 | 52.0 | 5.56e-01 | 89.8% | 100.0% |
| 4505160 | 219.1.1.1 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Peptidase_C1 | 0.61 | 53.0 | 5.49e-01 | 90.1% | 100.0% |
| 4059449 | 219.1.1.110 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Peptidase_C1, Peptidase_C1_2 | 0.60 | 52.0 | 5.54e-01 | 90.8% | 100.0% |
| 3906939 | 219.1.1.1 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Peptidase_C1 | 0.60 | 55.0 | 5.45e-01 | 94.5% | 99.3% |
| 3674165 | 219.1.1.110 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Peptidase_C1, Peptidase_C1_2 | 0.59 | 52.0 | 5.49e-01 | 91.1% | 100.0% |
| 4024826 | 219.1.1.1 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Peptidase_C1 | 0.59 | 54.0 | 4.90e-01 | 95.2% | 98.1% |
| 5032087 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.52 | 20.0 | 2.74e-01 | 74.4% | 66.0% |
D2
medium
residues 246-336
Domain cluster:
representative
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF00112.30 best | Peptidase_C1 | 35.4 | 1.70e-08 | 89.0% | 21.8% |
CATH (9)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1sp4B00 | 3.90.70.10 | Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases | 0.88 | 55.0 | 4.07e-01 | 100.0% | 28.3% |
| 2wbfX00 | 3.90.70.10 | Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases | 0.74 | 54.0 | 3.75e-01 | 100.0% | 25.7% |
| 3pnrA00 | 3.90.70.10 | Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases | 0.67 | 50.0 | 3.63e-01 | 100.0% | 29.6% |
| 3fw3B00 | 3.10.200.10 | Alpha Beta › Roll › Carbonic Anhydrase II › Alpha carbonic anhydrase | 0.58 | 51.0 | 3.70e-01 | 96.7% | 71.0% |
| 4xfwA00 | 3.10.200.10 | Alpha Beta › Roll › Carbonic Anhydrase II › Alpha carbonic anhydrase | 0.55 | 48.0 | 3.59e-01 | 96.7% | 68.6% |
| 3q31A00 | 3.10.200.10 | Alpha Beta › Roll › Carbonic Anhydrase II › Alpha carbonic anhydrase | 0.54 | 47.0 | 3.46e-01 | 96.7% | 70.3% |
| 2vtwA00 | 2.60.90.30 | Mainly Beta › Sandwich › Adenovirus Type 5 Fiber Protein (Receptor Binding Domain) › Fiber protein 1, C-terminal domain | 0.53 | 46.0 | 3.58e-01 | 96.7% | 82.0% |
| 3ke7B00 | 3.10.450.50 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.51 | 40.0 | 3.57e-01 | 85.7% | 68.4% |
| 3nv0B00 | 3.10.450.50 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.51 | 40.0 | 3.53e-01 | 85.7% | 64.7% |
ECOD (11)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3940207 | 219.1.1.1 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Peptidase_C1 | 0.82 | 56.0 | 3.96e-01 | 100.0% | 25.8% |
| 3226605 | 219.1.1.1 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Peptidase_C1 | 0.78 | 55.0 | 4.15e-01 | 100.0% | 33.0% |
| 4024702 | 219.1.1.1 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Peptidase_C1 | 0.71 | 53.0 | 3.78e-01 | 100.0% | 27.8% |
| 3776905 | 219.1.1.1 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Peptidase_C1 | 0.67 | 54.0 | 3.85e-01 | 100.0% | 30.0% |
| 3791026 | 219.1.1.0 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases | 0.60 | 56.0 | 3.73e-01 | 100.0% | 79.4% |
| 3865831 | 219.1.1.0 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases | 0.59 | 55.0 | 3.66e-01 | 100.0% | 80.9% |
| 4024199 | 219.1.1.0 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases | 0.57 | 53.0 | 3.57e-01 | 100.0% | 81.2% |
| 3741555 | 4969.1.1.0 ↗ | alpha bundles › thumb domain in bacteriophage RB69-like DNA polymerase I › thumb domain in bacteriophage RB69-like DNA polymerase I › thumb domain in bacteriophage RB69-like DNA polymerase I | 0.56 | 37.0 | 2.81e-01 | 95.6% | 26.5% |
| 3933760 | 1.1.1.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › acid protease | 0.53 | 40.0 | 3.81e-01 | 100.0% | 67.3% |
| 4956937 | 2484.1.1.59 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › NurA | 0.52 | 39.0 | 2.73e-01 | 82.4% | 75.6% |
| 4961486 | 2484.1.1.18 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DDE_Tnp_1 | 0.50 | 38.0 | 2.54e-01 | 81.3% | 49.9% |
D3
medium
residues 385-424