←Back to structures
hypothetical_protein_LAU_0328
Euk-VirLausannevirus
hypothetical_protein_LAU_0328__YP_004347291__Lausannevirus__999883
Identity
- Accession:
- YP_004347291 ↗
- Protein ID:
- hypothetical_protein_LAU_0328
- Kingdom:
- euk
Quality
59.1
mean pLDDT
Taxonomy
Bamfordvirae›
Nucleocytoviricota›
Megaviricetes›
Pimascovirales›
Marseilleviridae›
Losannavirus›
Lausannevirus
TaxID: 999883
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 9-67
D2
high
residues 168-232
Domain cluster:
rep: hypothetical_protein_LAU_0328__YP_004347291__Lausannevirus__999883__D296-349
CATH (12)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5c17A00 | 3.30.450.410 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › | 0.66 | 56.0 | 4.04e-01 | 100.0% | 39.8% |
| 1qwyA01 | 2.40.50.290 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › | 0.63 | 45.0 | 4.63e-01 | 89.2% | 79.0% |
| 2jveA00 | 2.10.60.10 | Mainly Beta › Ribbon › CD59 › CD59 | 0.57 | 47.0 | 4.65e-01 | 92.3% | 84.5% |
| 3dkqA01 | 2.60.120.620 | Mainly Beta › Sandwich › Jelly Rolls › q2cbj1_9rhob like domain | 0.54 | 42.0 | 3.16e-01 | 89.2% | 98.9% |
| 3r4cA02 | 3.30.1240.10 | Alpha Beta › 2-Layer Sandwich › Hypothetical Protein, Haloacid Dehalogenase-like Hydrolase; Chain: A; domain 2 › | 0.53 | 42.0 | 3.66e-01 | 87.7% | 83.2% |
| 1knxE02 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.52 | 36.0 | 2.76e-01 | 73.8% | 50.9% |
| 1qhkA00 | 3.40.970.10 | Alpha Beta › 3-Layer(aba) Sandwich › Ribonuclease HI; Chain A › Ribonuclease H1, N-terminal domain | 0.52 | 35.0 | 3.83e-01 | 90.8% | 100.0% |
| 2j8bA00 | 2.10.60.10 | Mainly Beta › Ribbon › CD59 › CD59 | 0.52 | 43.0 | 4.08e-01 | 96.9% | 92.3% |
| 3rcnA01 | 3.30.379.10 | Alpha Beta › 2-Layer Sandwich › Chitobiase; domain 2 › Chitobiase/beta-hexosaminidase domain 2-like | 0.51 | 38.0 | 3.04e-01 | 80.0% | 65.6% |
| 1nf2A02 | 3.30.1240.10 | Alpha Beta › 2-Layer Sandwich › Hypothetical Protein, Haloacid Dehalogenase-like Hydrolase; Chain: A; domain 2 › | 0.51 | 37.0 | 3.27e-01 | 80.0% | 50.0% |
| 1qwdB00 | 2.40.128.20 | Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain | 0.50 | 36.0 | 2.85e-01 | 81.5% | 99.4% |
| 2innB00 | 1.10.620.20 | Mainly Alpha › Orthogonal Bundle › Ribonucleotide Reductase, subunit A › Ribonucleotide Reductase, subunit A | 0.50 | 39.0 | 2.42e-01 | 90.8% | 42.2% |
ECOD (40)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4622447 | 1.1.1.7 ↗ | beta barrels › cradle loop barrel › RIFT-related › acid protease › tRNA-synt_1_2 | 0.71 | 52.0 | 3.67e-01 | 78.5% | 43.0% |
| 4620263 | 1.1.1.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › acid protease | 0.70 | 51.0 | 3.59e-01 | 78.5% | 42.4% |
| 4106902 | 1.1.1.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › acid protease | 0.69 | 51.0 | 3.67e-01 | 80.0% | 42.6% |
| 4886707 | 375.1.1.304 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › tRNA-synt_1_2 | 0.68 | 51.0 | 3.63e-01 | 80.0% | 43.1% |
| 4294300 | 1.1.1.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › acid protease | 0.68 | 49.0 | 3.56e-01 | 78.5% | 43.6% |
| 4270694 | 1.1.1.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › acid protease | 0.68 | 51.0 | 3.60e-01 | 80.0% | 40.5% |
| 4134159 | 1.1.1.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › acid protease | 0.67 | 50.0 | 3.63e-01 | 80.0% | 42.2% |
| 4142507 | 1.1.1.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › acid protease | 0.67 | 50.0 | 3.58e-01 | 80.0% | 41.0% |
| 3164904 | 3008.1.1.0 ↗ | a+b three layers › A subdomain in the anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › A subdomain in the anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › A subdomain in the anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases | 0.67 | 50.0 | 3.56e-01 | 80.0% | 44.6% |
| 4612383 | 1.1.1.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › acid protease | 0.66 | 49.0 | 3.70e-01 | 80.0% | 43.1% |
| 4177272 | 1.1.1.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › acid protease | 0.66 | 50.0 | 3.55e-01 | 81.5% | 40.0% |
| 3785870 | 1.1.1.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › acid protease | 0.66 | 49.0 | 3.44e-01 | 80.0% | 41.9% |
| 4267075 | 1.1.1.7 ↗ | beta barrels › cradle loop barrel › RIFT-related › acid protease › tRNA-synt_1_2 | 0.65 | 49.0 | 3.48e-01 | 80.0% | 44.1% |
| 4614587 | 1.1.1.7 ↗ | beta barrels › cradle loop barrel › RIFT-related › acid protease › tRNA-synt_1_2 | 0.65 | 49.0 | 3.47e-01 | 81.5% | 43.9% |
| 3959734 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.65 | 47.0 | 4.21e-01 | 78.5% | 70.5% |
| 4451053 | 379.1.1.3 ↗ | few secondary structure elements › Kazal-type serine protease inhibitors-like › Kazal-type serine protease inhibitors › Kazal-type serine protease inhibitors › Kazal_2 | 0.65 | 41.0 | 4.56e-01 | 84.6% | 84.0% |
| 4994 | 822.1.1.1 ↗ | a+b two layers › GYF/BRK domain-like › GYF domain › GYF domain › GYF | 0.64 | 43.0 | 4.12e-01 | 70.8% | 79.5% |
| 3413459 | 379.1.1.3 ↗ | few secondary structure elements › Kazal-type serine protease inhibitors-like › Kazal-type serine protease inhibitors › Kazal-type serine protease inhibitors › Kazal_2 | 0.63 | 42.0 | 4.74e-01 | 86.2% | 91.8% |
| 3407580 | 379.1.1.0 ↗ | few secondary structure elements › Kazal-type serine protease inhibitors-like › Kazal-type serine protease inhibitors › Kazal-type serine protease inhibitors | 0.62 | 44.0 | 4.33e-01 | 86.2% | 68.6% |
| 3400250 | 379.1.1.3 ↗ | few secondary structure elements › Kazal-type serine protease inhibitors-like › Kazal-type serine protease inhibitors › Kazal-type serine protease inhibitors › Kazal_2 | 0.61 | 39.0 | 4.34e-01 | 81.5% | 86.0% |
| 3398570 | 379.1.1.3 ↗ | few secondary structure elements › Kazal-type serine protease inhibitors-like › Kazal-type serine protease inhibitors › Kazal-type serine protease inhibitors › Kazal_2 | 0.60 | 40.0 | 4.40e-01 | 84.6% | 88.0% |
| 3613986 | 109.4.1.3310 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › GYF_2 | 0.60 | 40.0 | 2.51e-01 | 90.8% | 11.5% |
| 3389045 | 379.1.1.1 ↗ | few secondary structure elements › Kazal-type serine protease inhibitors-like › Kazal-type serine protease inhibitors › Kazal-type serine protease inhibitors › Kazal_1 | 0.60 | 40.0 | 4.43e-01 | 86.2% | 90.0% |
| 3405249 | 379.1.1.3 ↗ | few secondary structure elements › Kazal-type serine protease inhibitors-like › Kazal-type serine protease inhibitors › Kazal-type serine protease inhibitors › Kazal_2 | 0.59 | 40.0 | 4.36e-01 | 86.2% | 86.8% |
| 3388590 | 379.1.1.0 ↗ | few secondary structure elements › Kazal-type serine protease inhibitors-like › Kazal-type serine protease inhibitors › Kazal-type serine protease inhibitors | 0.59 | 40.0 | 4.14e-01 | 84.6% | 76.7% |
| 169110 | 382.1.1.0 ↗ | few secondary structure elements › Snake toxin-like › Snake toxin-like › Snake toxin-like | 0.58 | 48.0 | 4.71e-01 | 92.3% | 85.7% |
| 4932721 | 1.1.1.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › acid protease | 0.56 | 46.0 | 3.30e-01 | 90.8% | 32.6% |
| 4006572 | 171.1.1.12 ↗ | alpha arrays › RNase III catalytic domain-like › RNase III catalytic domain-like › RNase III catalytic domain-like › PF28438 | 0.55 | 39.0 | 3.98e-01 | 93.8% | 78.5% |
| None | — | 0.55 | 37.0 | 2.82e-01 | 87.7% | 27.3% | |
| 3941676 | 1077.1.1.1 ↗ | few secondary structure elements › RelA zinc-finger domain › RelA zinc-finger domain › RelA zinc-finger domain › RelA_RIS | 0.55 | 39.0 | 3.91e-01 | 95.4% | 74.3% |
| 4100838 | 2006.1.3.1 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › Toprim domain › DNA_gyraseB_C,Toprim | 0.54 | 38.0 | 2.71e-01 | 75.4% | 60.3% |
| 3519254 | 6171.1.1.0 ↗ | alpha bundles › C-terminal helical domain in Jumonji domain-containing histone demethylases › C-terminal helical domain in Jumonji domain-containing histone demethylases › C-terminal helical domain in Jumonji domain-containing histone demethylases | 0.54 | 37.0 | 2.77e-01 | 89.2% | 26.1% |
| 4946420 | 376.1.1.180 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › ResIII | 0.53 | 43.0 | 4.38e-01 | 100.0% | 95.4% |
| 3983246 | 1.1.7.11 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › RimM | 0.52 | 37.0 | 3.28e-01 | 73.8% | 95.8% |
| 4011643 | 376.1.1.0 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box | 0.52 | 41.0 | 3.79e-01 | 90.8% | 98.9% |
| 3489619 | 109.4.1.872 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › INTS1_INTS2-bd | 0.52 | 42.0 | 2.50e-01 | 95.4% | 25.5% |
| 4005326 | 109.2.1.42 ↗ | alpha superhelices › Repetitive alpha hairpins › alpha/alpha toroid › alpha/alpha toroid › MGH1-like_GH | 0.52 | 43.0 | 2.58e-01 | 95.4% | 48.8% |
| 4033853 | 3012.1.1.0 ↗ | a+b two layers › Cof C2 cap domain › Cof C2 cap domain › Cof C2 cap domain | 0.51 | 39.0 | 3.45e-01 | 84.6% | 83.0% |
| 3653663 | 377.1.1.12 ↗ | few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like › zf-C5HC2 | 0.50 | 37.0 | 2.92e-01 | 84.6% | 77.6% |
| 3809803 | 376.1.1.0 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box | 0.50 | 41.0 | 4.13e-01 | 93.8% | 93.8% |
D3
high
residues 296-349
Domain cluster:
representative
CATH (14)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1iw4A00 | 3.30.60.30 | Alpha Beta › 2-Layer Sandwich › Wheat Germ Agglutinin (Isolectin 2); domain 1 › | 0.61 | 40.0 | 4.03e-01 | 72.2% | 65.5% |
| 2kl5A00 | 3.50.4.20 | Alpha Beta › 3-Layer(bba) Sandwich › Hepatocyte Growth Factor › Uncharacterised protein DUF1027 | 0.57 | 41.0 | 3.41e-01 | 81.5% | 52.7% |
| 1ileA02 | 3.90.740.10 | Alpha Beta › Alpha-Beta Complex › Isoleucyl-tRNA Synthetase; domain 2 › Valyl/Leucyl/Isoleucyl-tRNA synthetase, editing domain | 0.57 | 48.0 | 3.37e-01 | 100.0% | 35.9% |
| 2yu4A00 | 3.30.40.10 | Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) | 0.57 | 47.0 | 4.06e-01 | 100.0% | 73.4% |
| 3vxcA02 | 3.40.190.10 | Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II | 0.56 | 46.0 | 3.21e-01 | 98.1% | 54.6% |
| 2gqtA02 | 3.30.465.10 | Alpha Beta › 2-Layer Sandwich › Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 3 › | 0.56 | 39.0 | 3.06e-01 | 75.9% | 74.4% |
| 2jveA00 | 2.10.60.10 | Mainly Beta › Ribbon › CD59 › CD59 | 0.55 | 46.0 | 4.27e-01 | 98.1% | 80.3% |
| 2innB00 | 1.10.620.20 | Mainly Alpha › Orthogonal Bundle › Ribonucleotide Reductase, subunit A › Ribonucleotide Reductase, subunit A | 0.55 | 42.0 | 2.51e-01 | 90.7% | 41.0% |
| 3tj8A02 | 3.30.70.790 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › UreE, C-terminal domain | 0.53 | 37.0 | 3.44e-01 | 75.9% | 82.4% |
| 3fzqA02 | 3.30.1240.10 | Alpha Beta › 2-Layer Sandwich › Hypothetical Protein, Haloacid Dehalogenase-like Hydrolase; Chain: A; domain 2 › | 0.52 | 43.0 | 3.39e-01 | 92.6% | 80.9% |
| 2j8bA00 | 2.10.60.10 | Mainly Beta › Ribbon › CD59 › CD59 | 0.52 | 43.0 | 3.92e-01 | 100.0% | 76.9% |
| 2jmzA01 | 2.170.16.10 | Mainly Beta › Beta Complex › Endonuclease - Pi-scei; Chain A, domain 1 › Hedgehog/Intein (Hint) domain | 0.52 | 43.0 | 3.18e-01 | 100.0% | 80.4% |
| 2mhyA00 | 2.10.60.10 | Mainly Beta › Ribbon › CD59 › CD59 | 0.51 | 39.0 | 3.85e-01 | 100.0% | 84.2% |
| 3rcnA01 | 3.30.379.10 | Alpha Beta › 2-Layer Sandwich › Chitobiase; domain 2 › Chitobiase/beta-hexosaminidase domain 2-like | 0.50 | 39.0 | 3.09e-01 | 92.6% | 67.2% |
ECOD (30)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4585224 | 2492.1.1.0 ↗ | a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like | 0.71 | 48.0 | 3.95e-01 | 70.4% | 38.8% |
| 4612383 | 1.1.1.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › acid protease | 0.64 | 55.0 | 3.99e-01 | 100.0% | 38.1% |
| 3181438 | 7590.1.1.7 ↗ | a/b three-layered sandwiches › Middle domain in Argonaute homologs › Middle domain in Argonaute homologs › Middle domain in Argonaute homologs › MID_MedPIWI | 0.64 | 44.0 | 2.92e-01 | 74.1% | 98.7% |
| 5059478 | 221.1.1.0 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like | 0.63 | 37.0 | 2.98e-01 | 70.4% | 28.2% |
| 4614587 | 1.1.1.7 ↗ | beta barrels › cradle loop barrel › RIFT-related › acid protease › tRNA-synt_1_2 | 0.61 | 52.0 | 3.58e-01 | 100.0% | 40.0% |
| 4134159 | 1.1.1.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › acid protease | 0.61 | 51.0 | 3.62e-01 | 100.0% | 37.8% |
| 4000496 | 6171.1.1.0 ↗ | alpha bundles › C-terminal helical domain in Jumonji domain-containing histone demethylases › C-terminal helical domain in Jumonji domain-containing histone demethylases › C-terminal helical domain in Jumonji domain-containing histone demethylases | 0.60 | 43.0 | 2.99e-01 | 98.1% | 21.0% |
| 4177272 | 1.1.1.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › acid protease | 0.60 | 52.0 | 3.56e-01 | 100.0% | 36.5% |
| 5055863 | 304.135.1.0 ↗ | a+b two layers › Alpha-beta plaits › O-phosphoseryl-tRNA synthetase C-terminal domain › O-phosphoseryl-tRNA synthetase C-terminal domain | 0.60 | 42.0 | 2.96e-01 | 74.1% | 22.8% |
| 4006572 | 171.1.1.12 ↗ | alpha arrays › RNase III catalytic domain-like › RNase III catalytic domain-like › RNase III catalytic domain-like › PF28438 | 0.60 | 46.0 | 4.43e-01 | 98.1% | 73.8% |
| 3941676 | 1077.1.1.1 ↗ | few secondary structure elements › RelA zinc-finger domain › RelA zinc-finger domain › RelA zinc-finger domain › RelA_RIS | 0.60 | 46.0 | 4.33e-01 | 98.1% | 68.6% |
| 4543835 | 1.1.1.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › acid protease | 0.60 | 51.0 | 3.45e-01 | 100.0% | 39.5% |
| 3623715 | 376.1.1.0 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box | 0.59 | 50.0 | 4.77e-01 | 100.0% | 87.7% |
| 3787741 | 376.1.1.0 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box | 0.59 | 44.0 | 4.33e-01 | 100.0% | 75.0% |
| 3163907 | 221.1.1.220 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › PF28438 | 0.59 | 45.0 | 4.27e-01 | 98.1% | 68.6% |
| 3785870 | 1.1.1.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › acid protease | 0.59 | 50.0 | 3.41e-01 | 100.0% | 38.1% |
| 5065610 | 376.1.1.21 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-RING_2 | 0.58 | 45.0 | 4.58e-01 | 94.4% | 100.0% |
| 3744884 | 376.1.1.66 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-RING_16 | 0.58 | 47.0 | 4.40e-01 | 100.0% | 83.6% |
| 3248947 | 376.1.1.0 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box | 0.57 | 45.0 | 4.21e-01 | 100.0% | 68.0% |
| 3809803 | 376.1.1.0 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box | 0.57 | 48.0 | 4.59e-01 | 100.0% | 86.2% |
| 163114 | 150.1.2.0 ↗ | alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › Ferritin/Heme oxygenase › Heme oxygenase/Ribonucleotide reductase | 0.57 | 42.0 | 2.49e-01 | 83.3% | 10.1% |
| 4553664 | 7590.1.1.7 ↗ | a/b three-layered sandwiches › Middle domain in Argonaute homologs › Middle domain in Argonaute homologs › Middle domain in Argonaute homologs › MID_MedPIWI | 0.55 | 39.0 | 2.52e-01 | 77.8% | 63.9% |
| 3307667 | 377.1.1.0 ↗ | few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like | 0.54 | 44.0 | 3.39e-01 | 90.7% | 97.6% |
| 3866524 | 377.1.1.0 ↗ | few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like | 0.53 | 44.0 | 3.10e-01 | 100.0% | 32.0% |
| 4340143 | 382.1.1.0 ↗ | few secondary structure elements › Snake toxin-like › Snake toxin-like › Snake toxin-like | 0.53 | 44.0 | 4.17e-01 | 98.1% | 81.2% |
| 4176445 | 247.1.1.44 ↗ | a+b four layers › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Lactamase_B, RMMBL, Lactamase_B_6 | 0.53 | 43.0 | 2.64e-01 | 88.9% | 15.7% |
| 4027310 | 73.1.1.0 ↗ | beta sandwiches › SMAD/FHA domain › SMAD/FHA domain › SMAD/FHA domain | 0.53 | 44.0 | 3.46e-01 | 100.0% | 52.3% |
| 3414477 | 386.1.1.0 ↗ | few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers | 0.53 | 39.0 | 3.95e-01 | 81.5% | 83.6% |
| 3746678 | 382.1.1.16 ↗ | few secondary structure elements › Snake toxin-like › Snake toxin-like › Snake toxin-like › CD59 | 0.51 | 42.0 | 3.91e-01 | 100.0% | 80.0% |
| 3925828 | 1.1.2.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › double psi | 0.51 | 41.0 | 3.51e-01 | 94.4% | 85.3% |
D4
medium
residues 354-414
Domain cluster:
representative
CATH (14)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2yfaA02 | 1.20.1440.210 | Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › | 0.85 | 68.0 | 5.42e-01 | 85.2% | 44.8% |
| 3dfzA02 | 1.10.8.610 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › SirC, precorrin-2 dehydrogenase, C-terminal helical domain-like | 0.77 | 54.0 | 5.00e-01 | 73.8% | 59.5% |
| 1ij5A01 | 1.20.58.90 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.73 | 57.0 | 5.33e-01 | 85.2% | 100.0% |
| 2i7uA00 | 6.10.250.1010 | Special › Helix non-globular › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › | 0.70 | 56.0 | 5.59e-01 | 86.9% | 88.7% |
| 1dmhA00 | 2.60.130.10 | Mainly Beta › Sandwich › Protocatechuate 3,4-Dioxygenase, subunit A › Aromatic compound dioxygenase | 0.69 | 48.0 | 3.07e-01 | 78.7% | 14.6% |
| 5dckA00 | 1.10.1200.30 | Mainly Alpha › Orthogonal Bundle › Non-ribosomal Peptide Synthetase Peptidyl Carrier Protein; Chain A › Retrovirus capsid C-terminal domain | 0.66 | 46.0 | 4.43e-01 | 73.8% | 66.2% |
| 2oh3A01 | 1.20.1260.10 | Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle | 0.66 | 56.0 | 4.34e-01 | 100.0% | 95.8% |
| 2nwlC00 | 1.10.3860.10 | Mainly Alpha › Orthogonal Bundle › Proton glutamate symport protein › Sodium:dicarboxylate symporter | 0.65 | 51.0 | 3.14e-01 | 86.9% | 34.5% |
| 3ic9A02 | 1.10.287.990 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Fe,Mn superoxide dismutase (SOD) domain | 0.64 | 52.0 | 5.00e-01 | 91.8% | 85.7% |
| 4csrB00 | 1.10.20.10 | Mainly Alpha › Orthogonal Bundle › Histone, subunit A › Histone, subunit A | 0.63 | 49.0 | 4.44e-01 | 100.0% | 62.2% |
| 2hepA00 | 1.10.287.540 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin | 0.60 | 40.0 | 4.57e-01 | 70.5% | 100.0% |
| 4impA01 | 6.10.140.1830 | Special › Helix non-globular › Helix Hairpins › | 0.57 | 42.0 | 4.49e-01 | 80.3% | 96.2% |
| 3tosA00 | 3.40.50.150 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 | 0.54 | 39.0 | 2.72e-01 | 82.0% | 94.4% |
| 3plnA03 | 3.40.50.720 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain | 0.54 | 40.0 | 3.09e-01 | 85.2% | 32.5% |
ECOD (13)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3744658 | 206.1.1.14 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › ABC1 | 0.89 | 72.0 | 4.13e-01 | 85.2% | 10.4% |
| 3238338 | 5055.1.1.0 ↗ | extended segments › Small-conductance potassium channel › Small-conductance potassium channel › Small-conductance potassium channel | 0.84 | 74.0 | 6.91e-01 | 96.7% | 86.7% |
| 3689259 | 5076.1.1.1 ↗ | alpha complex topology › Mitochondrial ADP/ATP carrier-like › Mitochondrial ADP/ATP carrier › Mitochondrial ADP/ATP carrier › Mito_carr | 0.80 | 72.0 | 4.51e-01 | 100.0% | 41.9% |
| 4486707 | 103.4.1.5 ↗ | alpha arrays › RuvA-C › Elongation factor TFIIS domain 2/ Kix domain of creb binding protein › Elongation factor TFIIS domain 2/ Kix domain of creb binding protein › KIX_2 | 0.77 | 68.0 | 6.07e-01 | 96.7% | 90.6% |
| 3185258 | 103.4.1.0 ↗ | alpha arrays › RuvA-C › Elongation factor TFIIS domain 2/ Kix domain of creb binding protein › Elongation factor TFIIS domain 2/ Kix domain of creb binding protein | 0.76 | 61.0 | 5.35e-01 | 88.5% | 71.1% |
| 2559826 | 2004.1.1.85 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › ArsA_ATPase | 0.74 | 57.0 | 3.53e-01 | 82.0% | 18.5% |
| 3468740 | 109.3.1.188 ↗ | alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat › PF28568 | 0.74 | 59.0 | 4.11e-01 | 91.8% | 27.2% |
| 4574972 | 192.7.1.0 ↗ | alpha bundles › Long alpha-hairpin › tRNA-binding arm › tRNA-binding arm | 0.71 | 56.0 | 5.69e-01 | 86.9% | 86.7% |
| 3278143 | 1075.3.1.0 ↗ | alpha bundles › Type II ABC exporter transmembrane domain fold › Type I ABC importer transmembrane domain fold › Type I ABC importer transmembrane domain fold | 0.70 | 58.0 | 3.62e-01 | 91.8% | 20.0% |
| 3350558 | 205.1.1.19 ↗ | a+b two layers › 4Fe-4S ferredoxin › 4Fe-4S ferredoxin › 4Fe-4S ferredoxin › Fer4_13 | 0.68 | 58.0 | 4.75e-01 | 96.7% | 87.8% |
| 4085235 | 377.1.1.11 ↗ | few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like › RecO_C | 0.65 | 45.0 | 3.40e-01 | 72.1% | 28.4% |
| 3605504 | 213.1.1.1 ↗ | a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) › Acetyltransf_1 | 0.64 | 51.0 | 3.44e-01 | 86.9% | 35.4% |
| 5081048 | 2003.1.5.66 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_11 | 0.62 | 45.0 | 3.17e-01 | 80.3% | 23.7% |