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hypothetical_protein_LIYVs1gp2

Euk-Vir

Lettuce_infectious_yellows_virus

hypothetical_protein_LIYVs1gp2__NP_619694__Lettuce_infectious_yellows_virus__31713

Identity

Accession:
NP_619694 ↗
Protein ID:
hypothetical_protein_LIYVs1gp2
Kingdom:
euk

Quality

61.1 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 52-209
PDB
Domain cluster: representative
CATH (18)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2eb1C00 1.10.1520.10 Mainly Alpha › Orthogonal Bundle › Ribonuclease iii, N-terminal Endonuclease Domain; Chain A › Ribonuclease III domain 0.76 67.0 6.53e-01 92.4% 89.3%
7r97A01 1.10.1520.10 Mainly Alpha › Orthogonal Bundle › Ribonuclease iii, N-terminal Endonuclease Domain; Chain A › Ribonuclease III domain 0.73 60.0 6.19e-01 92.4% 89.9%
3rv0C02 1.10.1520.10 Mainly Alpha › Orthogonal Bundle › Ribonuclease iii, N-terminal Endonuclease Domain; Chain A › Ribonuclease III domain 0.72 56.0 5.85e-01 86.1% 87.5%
3n3wA00 1.10.1520.10 Mainly Alpha › Orthogonal Bundle › Ribonuclease iii, N-terminal Endonuclease Domain; Chain A › Ribonuclease III domain 0.72 59.0 6.17e-01 92.4% 93.1%
1jfzA00 1.10.1520.10 Mainly Alpha › Orthogonal Bundle › Ribonuclease iii, N-terminal Endonuclease Domain; Chain A › Ribonuclease III domain 0.71 59.0 6.10e-01 94.9% 91.2%
4oogC01 1.10.1520.10 Mainly Alpha › Orthogonal Bundle › Ribonuclease iii, N-terminal Endonuclease Domain; Chain A › Ribonuclease III domain 0.69 59.0 5.89e-01 89.2% 89.5%
2gslF00 1.10.1520.10 Mainly Alpha › Orthogonal Bundle › Ribonuclease iii, N-terminal Endonuclease Domain; Chain A › Ribonuclease III domain 0.68 49.0 5.45e-01 98.7% 91.3%
1o0wA01 1.10.1520.10 Mainly Alpha › Orthogonal Bundle › Ribonuclease iii, N-terminal Endonuclease Domain; Chain A › Ribonuclease III domain 0.68 59.0 6.06e-01 94.9% 93.5%
2qvwC06 1.10.1520.10 Mainly Alpha › Orthogonal Bundle › Ribonuclease iii, N-terminal Endonuclease Domain; Chain A › Ribonuclease III domain 0.68 59.0 6.05e-01 97.5% 94.1%
2qvwA04 1.10.1520.10 Mainly Alpha › Orthogonal Bundle › Ribonuclease iii, N-terminal Endonuclease Domain; Chain A › Ribonuclease III domain 0.67 56.0 5.89e-01 96.2% 95.9%
1u61A00 1.10.1520.10 Mainly Alpha › Orthogonal Bundle › Ribonuclease iii, N-terminal Endonuclease Domain; Chain A › Ribonuclease III domain 0.66 49.0 5.50e-01 98.7% 95.3%
4zqeA03 1.10.1740.10 Mainly Alpha › Orthogonal Bundle › Rna Polymerase Sigma Factor; Chain: A › RNA polymerase sigma factor, region 2, helix turn helix motif 0.62 30.0 3.79e-01 74.7% 75.0%
3g0tA02 6.10.120.10 Special › Helix non-globular › 434 Repressor (Amino-terminal Domain) › Bacterial aspartate aminotransferase, helical domain 0.56 27.0 3.75e-01 86.7% 100.0%
3vskA02 1.10.10.1230 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Penicillin-binding protein, N-terminal non-catalytic domain, head sub-domain 0.54 38.0 3.99e-01 91.1% 80.7%
4s3mB02 1.10.1040.10 Mainly Alpha › Orthogonal Bundle › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 0.52 28.0 3.32e-01 85.4% 74.5%
4k51B00 1.25.40.860 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › 0.52 35.0 3.52e-01 99.4% 67.3%
1ic8A01 1.10.260.40 Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains 0.51 30.0 3.78e-01 91.1% 98.9%
3mhsB00 1.10.246.140 Mainly Alpha › Orthogonal Bundle › Serum Albumin; Chain A, Domain 1 › ENY2/SUS1 0.51 27.0 3.45e-01 87.3% 89.0%
ECOD (82)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
2753450 171.1.1.1 alpha arrays › RNase III catalytic domain-like › RNase III catalytic domain-like › RNase III catalytic domain-like › Ribonuclease_3 0.82 59.0 6.47e-01 89.2% 88.6%
3508663 171.1.1.1 alpha arrays › RNase III catalytic domain-like › RNase III catalytic domain-like › RNase III catalytic domain-like › Ribonuclease_3 0.81 72.0 6.58e-01 92.4% 87.5%
1736237 171.1.1.4 alpha arrays › RNase III catalytic domain-like › RNase III catalytic domain-like › RNase III catalytic domain-like › Ribonucleas_3_3 0.81 54.0 5.84e-01 79.1% 79.1%
4427540 171.1.1.1 alpha arrays › RNase III catalytic domain-like › RNase III catalytic domain-like › RNase III catalytic domain-like › Ribonuclease_3 0.79 72.0 6.51e-01 94.9% 89.3%
3928810 171.1.1.9 alpha arrays › RNase III catalytic domain-like › RNase III catalytic domain-like › RNase III catalytic domain-like › Ribonuclease_3, Ribonucleas_3_3 0.79 71.0 6.52e-01 94.9% 90.5%
4482046 171.1.1.1 alpha arrays › RNase III catalytic domain-like › RNase III catalytic domain-like › RNase III catalytic domain-like › Ribonuclease_3 0.79 71.0 6.62e-01 94.9% 92.1%
3739402 171.1.1.1 alpha arrays › RNase III catalytic domain-like › RNase III catalytic domain-like › RNase III catalytic domain-like › Ribonuclease_3 0.78 70.0 6.71e-01 94.3% 90.6%
3371349 171.1.1.1 alpha arrays › RNase III catalytic domain-like › RNase III catalytic domain-like › RNase III catalytic domain-like › Ribonuclease_3 0.78 70.0 6.65e-01 94.9% 90.3%
4472719 171.1.1.9 alpha arrays › RNase III catalytic domain-like › RNase III catalytic domain-like › RNase III catalytic domain-like › Ribonuclease_3, Ribonucleas_3_3 0.78 70.0 6.30e-01 94.9% 91.0%
3728857 171.1.1.1 alpha arrays › RNase III catalytic domain-like › RNase III catalytic domain-like › RNase III catalytic domain-like › Ribonuclease_3 0.77 58.0 6.23e-01 94.9% 89.6%
3785050 171.1.1.0 alpha arrays › RNase III catalytic domain-like › RNase III catalytic domain-like › RNase III catalytic domain-like 0.77 53.0 5.67e-01 89.9% 80.0%
3835593 171.1.1.1 alpha arrays › RNase III catalytic domain-like › RNase III catalytic domain-like › RNase III catalytic domain-like › Ribonuclease_3 0.75 71.0 6.73e-01 98.7% 93.3%
3459299 171.1.1.1 alpha arrays › RNase III catalytic domain-like › RNase III catalytic domain-like › RNase III catalytic domain-like › Ribonuclease_3 0.75 68.0 6.26e-01 94.9% 84.1%
4530473 171.1.1.4 alpha arrays › RNase III catalytic domain-like › RNase III catalytic domain-like › RNase III catalytic domain-like › Ribonucleas_3_3 0.74 62.0 6.31e-01 92.4% 88.4%
2885358 171.1.1.0 alpha arrays › RNase III catalytic domain-like › RNase III catalytic domain-like › RNase III catalytic domain-like 0.73 60.0 6.09e-01 92.4% 86.4%
4045736 171.1.1.4 alpha arrays › RNase III catalytic domain-like › RNase III catalytic domain-like › RNase III catalytic domain-like › Ribonucleas_3_3 0.73 61.0 6.15e-01 92.4% 86.1%
5052864 171.1.1.1 alpha arrays › RNase III catalytic domain-like › RNase III catalytic domain-like › RNase III catalytic domain-like › Ribonuclease_3 0.73 60.0 6.33e-01 94.9% 93.1%
4674797 171.1.1.4 alpha arrays › RNase III catalytic domain-like › RNase III catalytic domain-like › RNase III catalytic domain-like › Ribonucleas_3_3 0.73 58.0 6.03e-01 88.6% 87.3%
3838688 171.1.1.4 alpha arrays › RNase III catalytic domain-like › RNase III catalytic domain-like › RNase III catalytic domain-like › Ribonucleas_3_3 0.73 60.0 5.97e-01 92.4% 83.7%
3680206 171.1.1.4 alpha arrays › RNase III catalytic domain-like › RNase III catalytic domain-like › RNase III catalytic domain-like › Ribonucleas_3_3 0.73 58.0 5.87e-01 92.4% 83.9%
3487255 171.1.1.0 alpha arrays › RNase III catalytic domain-like › RNase III catalytic domain-like › RNase III catalytic domain-like 0.73 67.0 6.22e-01 97.5% 93.3%
4998770 171.1.1.4 alpha arrays › RNase III catalytic domain-like › RNase III catalytic domain-like › RNase III catalytic domain-like › Ribonucleas_3_3 0.73 60.0 6.23e-01 94.9% 90.7%
3964377 171.1.1.4 alpha arrays › RNase III catalytic domain-like › RNase III catalytic domain-like › RNase III catalytic domain-like › Ribonucleas_3_3 0.73 59.0 6.00e-01 92.4% 85.8%
3466972 171.1.1.0 alpha arrays › RNase III catalytic domain-like › RNase III catalytic domain-like › RNase III catalytic domain-like 0.73 58.0 6.04e-01 92.4% 89.7%
4237384 171.1.1.4 alpha arrays › RNase III catalytic domain-like › RNase III catalytic domain-like › RNase III catalytic domain-like › Ribonucleas_3_3 0.72 59.0 6.18e-01 94.9% 91.7%
4433400 171.1.1.4 alpha arrays › RNase III catalytic domain-like › RNase III catalytic domain-like › RNase III catalytic domain-like › Ribonucleas_3_3 0.72 60.0 5.86e-01 92.4% 80.6%
4485206 171.1.1.4 alpha arrays › RNase III catalytic domain-like › RNase III catalytic domain-like › RNase III catalytic domain-like › Ribonucleas_3_3 0.72 60.0 6.06e-01 92.4% 86.3%
4447919 171.1.1.4 alpha arrays › RNase III catalytic domain-like › RNase III catalytic domain-like › RNase III catalytic domain-like › Ribonucleas_3_3 0.71 60.0 5.90e-01 92.4% 82.4%
4952426 171.1.1.4 alpha arrays › RNase III catalytic domain-like › RNase III catalytic domain-like › RNase III catalytic domain-like › Ribonucleas_3_3 0.71 59.0 6.10e-01 92.4% 90.7%
4505265 171.1.1.4 alpha arrays › RNase III catalytic domain-like › RNase III catalytic domain-like › RNase III catalytic domain-like › Ribonucleas_3_3 0.71 58.0 5.64e-01 94.3% 78.2%
4437884 171.1.1.4 alpha arrays › RNase III catalytic domain-like › RNase III catalytic domain-like › RNase III catalytic domain-like › Ribonucleas_3_3 0.71 59.0 5.99e-01 94.3% 87.7%
4544296 171.1.1.4 alpha arrays › RNase III catalytic domain-like › RNase III catalytic domain-like › RNase III catalytic domain-like › Ribonucleas_3_3 0.71 60.0 6.22e-01 94.9% 93.3%
4108975 171.1.1.4 alpha arrays › RNase III catalytic domain-like › RNase III catalytic domain-like › RNase III catalytic domain-like › Ribonucleas_3_3 0.71 60.0 6.13e-01 94.9% 90.3%
3266933 171.1.1.1 alpha arrays › RNase III catalytic domain-like › RNase III catalytic domain-like › RNase III catalytic domain-like › Ribonuclease_3 0.71 55.0 5.56e-01 91.8% 80.0%
4284297 171.1.1.4 alpha arrays › RNase III catalytic domain-like › RNase III catalytic domain-like › RNase III catalytic domain-like › Ribonucleas_3_3 0.71 58.0 6.05e-01 92.4% 92.4%
4209383 171.1.1.4 alpha arrays › RNase III catalytic domain-like › RNase III catalytic domain-like › RNase III catalytic domain-like › Ribonucleas_3_3 0.71 60.0 6.07e-01 94.9% 89.7%
4095489 171.1.1.4 alpha arrays › RNase III catalytic domain-like › RNase III catalytic domain-like › RNase III catalytic domain-like › Ribonucleas_3_3 0.70 60.0 5.80e-01 92.4% 80.0%
4172739 171.1.1.4 alpha arrays › RNase III catalytic domain-like › RNase III catalytic domain-like › RNase III catalytic domain-like › Ribonucleas_3_3 0.70 60.0 6.16e-01 92.4% 92.7%
4950784 171.1.1.4 alpha arrays › RNase III catalytic domain-like › RNase III catalytic domain-like › RNase III catalytic domain-like › Ribonucleas_3_3 0.70 59.0 6.20e-01 92.4% 95.2%
4206901 171.1.1.4 alpha arrays › RNase III catalytic domain-like › RNase III catalytic domain-like › RNase III catalytic domain-like › Ribonucleas_3_3 0.70 60.0 5.87e-01 92.4% 82.4%
4948877 171.1.1.4 alpha arrays › RNase III catalytic domain-like › RNase III catalytic domain-like › RNase III catalytic domain-like › Ribonucleas_3_3 0.70 59.0 6.20e-01 92.4% 96.5%
4175259 171.1.1.4 alpha arrays › RNase III catalytic domain-like › RNase III catalytic domain-like › RNase III catalytic domain-like › Ribonucleas_3_3 0.70 60.0 5.88e-01 92.4% 83.5%
4070521 171.1.1.4 alpha arrays › RNase III catalytic domain-like › RNase III catalytic domain-like › RNase III catalytic domain-like › Ribonucleas_3_3 0.69 60.0 6.05e-01 94.9% 91.0%
4551223 171.1.1.4 alpha arrays › RNase III catalytic domain-like › RNase III catalytic domain-like › RNase III catalytic domain-like › Ribonucleas_3_3 0.69 60.0 5.92e-01 94.9% 86.7%
52376 171.1.1.0 alpha arrays › RNase III catalytic domain-like › RNase III catalytic domain-like › RNase III catalytic domain-like 0.69 59.0 5.86e-01 94.3% 85.6%
3482033 171.1.1.1 alpha arrays › RNase III catalytic domain-like › RNase III catalytic domain-like › RNase III catalytic domain-like › Ribonuclease_3 0.68 57.0 5.40e-01 94.9% 74.6%
2010570 171.1.1.1 alpha arrays › RNase III catalytic domain-like › RNase III catalytic domain-like › RNase III catalytic domain-like › Ribonuclease_3 0.68 59.0 5.69e-01 89.9% 83.9%
3782341 171.1.1.5 alpha arrays › RNase III catalytic domain-like › RNase III catalytic domain-like › RNase III catalytic domain-like › RM44_endonuclase 0.68 59.0 5.90e-01 89.9% 88.7%
3794340 171.1.1.4 alpha arrays › RNase III catalytic domain-like › RNase III catalytic domain-like › RNase III catalytic domain-like › Ribonucleas_3_3 0.68 60.0 5.44e-01 92.4% 82.9%
3928222 171.1.1.1 alpha arrays › RNase III catalytic domain-like › RNase III catalytic domain-like › RNase III catalytic domain-like › Ribonuclease_3 0.68 59.0 5.93e-01 94.9% 89.4%
3497133 171.1.1.0 alpha arrays › RNase III catalytic domain-like › RNase III catalytic domain-like › RNase III catalytic domain-like 0.68 57.0 5.63e-01 94.3% 83.0%
4652188 171.1.1.1 alpha arrays › RNase III catalytic domain-like › RNase III catalytic domain-like › RNase III catalytic domain-like › Ribonuclease_3 0.68 52.0 5.50e-01 100.0% 86.9%
4017889 171.1.1.1 alpha arrays › RNase III catalytic domain-like › RNase III catalytic domain-like › RNase III catalytic domain-like › Ribonuclease_3 0.68 58.0 5.63e-01 89.9% 82.2%
3307612 171.1.1.0 alpha arrays › RNase III catalytic domain-like › RNase III catalytic domain-like › RNase III catalytic domain-like 0.68 64.0 5.65e-01 100.0% 94.1%
3744100 171.1.1.1 alpha arrays › RNase III catalytic domain-like › RNase III catalytic domain-like › RNase III catalytic domain-like › Ribonuclease_3 0.67 58.0 5.84e-01 89.9% 88.7%
4508353 171.1.1.4 alpha arrays › RNase III catalytic domain-like › RNase III catalytic domain-like › RNase III catalytic domain-like › Ribonucleas_3_3 0.67 60.0 5.83e-01 92.4% 90.0%
3175182 171.1.1.0 alpha arrays › RNase III catalytic domain-like › RNase III catalytic domain-like › RNase III catalytic domain-like 0.67 55.0 5.53e-01 94.3% 84.4%
3851507 171.1.1.1 alpha arrays › RNase III catalytic domain-like › RNase III catalytic domain-like › RNase III catalytic domain-like › Ribonuclease_3 0.67 58.0 5.66e-01 94.9% 82.7%
3592552 171.1.1.0 alpha arrays › RNase III catalytic domain-like › RNase III catalytic domain-like › RNase III catalytic domain-like 0.67 57.0 5.16e-01 89.2% 68.1%
3702187 171.1.1.0 alpha arrays › RNase III catalytic domain-like › RNase III catalytic domain-like › RNase III catalytic domain-like 0.67 59.0 5.63e-01 92.4% 88.9%
3414818 171.1.1.5 alpha arrays › RNase III catalytic domain-like › RNase III catalytic domain-like › RNase III catalytic domain-like › RM44_endonuclase 0.67 58.0 5.48e-01 92.4% 77.8%
3253464 171.1.1.1 alpha arrays › RNase III catalytic domain-like › RNase III catalytic domain-like › RNase III catalytic domain-like › Ribonuclease_3 0.67 57.0 5.89e-01 100.0% 94.0%
4489673 3767.1.1.0 a+b two layers › Giardia Dicer N-terminal domain › Giardia Dicer N-terminal domain › Giardia Dicer N-terminal domain 0.66 62.0 4.51e-01 100.0% 92.4%
4460349 171.1.1.4 alpha arrays › RNase III catalytic domain-like › RNase III catalytic domain-like › RNase III catalytic domain-like › Ribonucleas_3_3 0.66 59.0 5.79e-01 94.9% 87.6%
3863706 171.1.1.5 alpha arrays › RNase III catalytic domain-like › RNase III catalytic domain-like › RNase III catalytic domain-like › RM44_endonuclase 0.66 58.0 5.19e-01 92.4% 69.5%
3254232 171.1.1.1 alpha arrays › RNase III catalytic domain-like › RNase III catalytic domain-like › RNase III catalytic domain-like › Ribonuclease_3 0.66 59.0 5.86e-01 94.3% 91.5%
3272544 171.1.1.1 alpha arrays › RNase III catalytic domain-like › RNase III catalytic domain-like › RNase III catalytic domain-like › Ribonuclease_3 0.65 58.0 5.39e-01 92.4% 80.0%
3329782 171.1.1.1 alpha arrays › RNase III catalytic domain-like › RNase III catalytic domain-like › RNase III catalytic domain-like › Ribonuclease_3 0.65 59.0 5.22e-01 94.9% 83.2%
3706271 171.1.1.0 alpha arrays › RNase III catalytic domain-like › RNase III catalytic domain-like › RNase III catalytic domain-like 0.65 54.0 5.50e-01 94.3% 88.4%
4299664 171.1.1.1 alpha arrays › RNase III catalytic domain-like › RNase III catalytic domain-like › RNase III catalytic domain-like › Ribonuclease_3 0.65 55.0 5.37e-01 96.2% 81.8%
4389736 171.1.1.1 alpha arrays › RNase III catalytic domain-like › RNase III catalytic domain-like › RNase III catalytic domain-like › Ribonuclease_3 0.65 57.0 5.21e-01 92.4% 77.1%
3472661 171.1.1.5 alpha arrays › RNase III catalytic domain-like › RNase III catalytic domain-like › RNase III catalytic domain-like › RM44_endonuclase 0.65 53.0 5.23e-01 85.4% 83.5%
3408861 171.1.1.1 alpha arrays › RNase III catalytic domain-like › RNase III catalytic domain-like › RNase III catalytic domain-like › Ribonuclease_3 0.65 59.0 5.49e-01 94.9% 83.2%
3517158 171.1.1.1 alpha arrays › RNase III catalytic domain-like › RNase III catalytic domain-like › RNase III catalytic domain-like › Ribonuclease_3 0.65 58.0 5.40e-01 94.9% 89.2%
3409328 171.1.1.1 alpha arrays › RNase III catalytic domain-like › RNase III catalytic domain-like › RNase III catalytic domain-like › Ribonuclease_3 0.65 57.0 5.16e-01 92.4% 80.5%
3802651 171.1.1.9 alpha arrays › RNase III catalytic domain-like › RNase III catalytic domain-like › RNase III catalytic domain-like › Ribonuclease_3, Ribonucleas_3_3 0.64 58.0 5.22e-01 94.9% 87.1%
1736239 171.1.1.1 alpha arrays › RNase III catalytic domain-like › RNase III catalytic domain-like › RNase III catalytic domain-like › Ribonuclease_3 0.64 59.0 5.80e-01 97.5% 91.6%
3626915 171.1.1.5 alpha arrays › RNase III catalytic domain-like › RNase III catalytic domain-like › RNase III catalytic domain-like › RM44_endonuclase 0.64 56.0 5.31e-01 92.4% 78.4%
3658602 171.1.1.1 alpha arrays › RNase III catalytic domain-like › RNase III catalytic domain-like › RNase III catalytic domain-like › Ribonuclease_3 0.64 56.0 5.15e-01 92.4% 75.0%
1108030 171.1.1.1 alpha arrays › RNase III catalytic domain-like › RNase III catalytic domain-like › RNase III catalytic domain-like › Ribonuclease_3 0.63 57.0 5.65e-01 94.9% 91.6%
3171709 171.1.1.0 alpha arrays › RNase III catalytic domain-like › RNase III catalytic domain-like › RNase III catalytic domain-like 0.63 54.0 5.39e-01 94.9% 88.7%
3420091 171.1.1.1 alpha arrays › RNase III catalytic domain-like › RNase III catalytic domain-like › RNase III catalytic domain-like › Ribonuclease_3 0.63 57.0 5.31e-01 94.9% 87.4%
D2 medium residues 1-51
PDB