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hypothetical_protein_MEL_009

Euk-Vir

Melbournevirus

hypothetical_protein_MEL_009__YP_009094510__Melbournevirus__1560514

Identity

Accession:
YP_009094510 ↗
Protein ID:
hypothetical_protein_MEL_009
Kingdom:
euk

Quality

83.0 mean pLDDT

Taxonomy

Bamfordvirae› Nucleocytoviricota› Megaviricetes› Pimascovirales› Marseilleviridae› Marseillevirus› Marseillevirus_sp._'Melbournevirus'

TaxID: 1560514

Cluster

View cluster (3 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 7-95
PDB
Domain cluster: rep: hypothetical_protein_D1R32_gp481__YP_009507243__Tunisvirus_fontaine2__1421067__D1-78
CATH (27)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4i8oA02 3.30.160.690 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Bacterial toxin RNase RnlA/LsoA, N repeated domain 0.69 46.0 4.66e-01 96.6% 67.8%
4hgzA02 2.20.25.570 Mainly Beta › Single Sheet › N-terminal domain of TfIIb › 0.67 38.0 4.56e-01 79.8% 83.3%
4r80A00 3.10.450.630 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.65 45.0 4.82e-01 98.9% 84.2%
1i1iP02 3.40.390.10 Alpha Beta › 3-Layer(aba) Sandwich › Collagenase (Catalytic Domain) › Collagenase (Catalytic Domain) 0.62 53.0 4.52e-01 97.8% 80.8%
1xszA03 3.30.310.140 Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › sec7 domains 0.61 54.0 4.39e-01 95.5% 76.4%
3hdjA01 3.30.1780.10 Alpha Beta › 2-Layer Sandwich › ornithine cyclodeaminase, domain 1 › ornithine cyclodeaminase, domain 1 0.60 48.0 4.23e-01 91.0% 87.1%
1lf6A01 2.70.98.10 Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › 0.59 52.0 3.68e-01 96.6% 69.6%
1z94B00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.58 50.0 4.27e-01 94.4% 72.7%
1d1jB00 3.30.450.30 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › Dynein light chain 2a, cytoplasmic 0.58 43.0 3.73e-01 78.7% 62.5%
2bzlA00 3.90.190.10 Alpha Beta › Alpha-Beta Complex › Protein-Tyrosine Phosphatase; Chain A › Protein tyrosine phosphatase superfamily 0.57 45.0 3.19e-01 85.4% 46.5%
3tdgA01 3.10.450.520 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.57 38.0 4.28e-01 74.2% 93.9%
4ge6A00 3.90.190.10 Alpha Beta › Alpha-Beta Complex › Protein-Tyrosine Phosphatase; Chain A › Protein tyrosine phosphatase superfamily 0.57 45.0 3.14e-01 85.4% 43.6%
2kf2A00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.56 45.0 3.69e-01 86.5% 72.5%
1vjhA00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.55 44.0 4.06e-01 88.8% 73.3%
2l3tA02 3.30.505.10 Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain 0.55 47.0 4.62e-01 98.9% 94.0%
2dx0B01 3.30.505.10 Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain 0.54 37.0 4.00e-01 71.9% 96.0%
2dx0A00 3.30.505.10 Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain 0.54 46.0 4.24e-01 95.5% 88.0%
3oyyA01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.54 35.0 3.91e-01 89.9% 89.4%
2i1yA00 3.90.190.10 Alpha Beta › Alpha-Beta Complex › Protein-Tyrosine Phosphatase; Chain A › Protein tyrosine phosphatase superfamily 0.53 42.0 3.05e-01 88.8% 79.1%
2vifA01 3.30.505.10 Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain 0.53 45.0 4.14e-01 100.0% 88.1%
2el8A01 3.30.505.10 Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain 0.53 43.0 4.27e-01 93.3% 87.9%
3mi6B03 2.60.40.1180 Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II 0.53 43.0 4.15e-01 97.8% 77.9%
4qa8A00 2.50.20.20 Mainly Beta › Clam › outer membrane lipoprotein receptor (LolB), chain A › 0.52 38.0 2.97e-01 78.7% 44.8%
2cm4A00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.52 40.0 3.55e-01 86.5% 65.5%
2l2mA00 3.30.160.20 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.52 38.0 4.14e-01 87.6% 100.0%
1uebA01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.51 33.0 3.68e-01 88.8% 92.1%
2eo6A01 3.30.505.10 Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain 0.50 42.0 4.04e-01 96.6% 97.2%
ECOD (43)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3239994 2484.1.1.200 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › FTH 0.69 47.0 3.24e-01 79.8% 21.4%
1678533 243.3.1.10 ↗ a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin › YPEB_PepSY1-2 0.68 46.0 5.14e-01 96.6% 90.0%
3239485 2484.1.1.0 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.67 48.0 4.20e-01 80.9% 50.8%
3626785 4041.1.1.1 ↗ a+b complex topology › insertion domain in beta subunit of DNA dependent RNA-polymerase › insertion domain in beta subunit of DNA dependent RNA-polymerase › insertion domain in beta subunit of DNA dependent RNA-polymerase › RNA_pol_Rpb2_2 0.64 48.0 3.80e-01 78.7% 78.3%
4950072 3692.1.1.1 ↗ a+b two layers › Ornithine cyclodeaminase-like enzymes dimerization domain › Ornithine cyclodeaminase-like enzymes dimerization domain › Ornithine cyclodeaminase-like enzymes dimerization domain › OCD_Mu_crystall 0.64 51.0 4.59e-01 87.6% 80.0%
3942181 6150.1.1.0 ↗ a+b two layers › hypotheical protein Lreu_0056 › hypotheical protein Lreu_0056 › hypotheical protein Lreu_0056 0.63 49.0 4.68e-01 83.1% 80.0%
3491449 4041.1.1.1 ↗ a+b complex topology › insertion domain in beta subunit of DNA dependent RNA-polymerase › insertion domain in beta subunit of DNA dependent RNA-polymerase › insertion domain in beta subunit of DNA dependent RNA-polymerase › RNA_pol_Rpb2_2 0.63 47.0 3.67e-01 78.7% 78.4%
3509892 4041.1.1.1 ↗ a+b complex topology › insertion domain in beta subunit of DNA dependent RNA-polymerase › insertion domain in beta subunit of DNA dependent RNA-polymerase › insertion domain in beta subunit of DNA dependent RNA-polymerase › RNA_pol_Rpb2_2 0.63 47.0 3.77e-01 78.7% 76.6%
3728986 4041.1.1.1 ↗ a+b complex topology › insertion domain in beta subunit of DNA dependent RNA-polymerase › insertion domain in beta subunit of DNA dependent RNA-polymerase › insertion domain in beta subunit of DNA dependent RNA-polymerase › RNA_pol_Rpb2_2 0.62 46.0 3.66e-01 77.5% 78.3%
3592763 4041.1.1.1 ↗ a+b complex topology › insertion domain in beta subunit of DNA dependent RNA-polymerase › insertion domain in beta subunit of DNA dependent RNA-polymerase › insertion domain in beta subunit of DNA dependent RNA-polymerase › RNA_pol_Rpb2_2 0.62 46.0 3.63e-01 78.7% 74.7%
3594326 241.10.1.0 ↗ a+b two layers › Type III secretory system chaperone-like › GAS2 domain › GAS2 domain 0.62 47.0 4.86e-01 91.0% 90.0%
4039230 330.1.1.1 ↗ a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › dsrm 0.62 48.0 5.14e-01 95.5% 97.3%
4827588 2003.1.5.81 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_25 0.62 36.0 2.94e-01 77.5% 30.5%
3167073 4099.1.1.0 ↗ a+b two layers › Kinetochore globular domain-like › Kinetochore globular domain-like › Kinetochore globular domain-like 0.62 51.0 4.31e-01 94.4% 90.0%
4355722 4099.1.1.0 ↗ a+b two layers › Kinetochore globular domain-like › Kinetochore globular domain-like › Kinetochore globular domain-like 0.61 46.0 4.57e-01 92.1% 74.7%
3271533 331.4.1.0 ↗ a+b two layers › TBP-like › Kinase associated domain 1, KA1 › Kinase associated domain 1, KA1 0.61 51.0 4.79e-01 89.9% 79.6%
3169357 331.4.1.0 ↗ a+b two layers › TBP-like › Kinase associated domain 1, KA1 › Kinase associated domain 1, KA1 0.61 49.0 4.53e-01 94.4% 69.1%
3606615 241.10.1.0 ↗ a+b two layers › Type III secretory system chaperone-like › GAS2 domain › GAS2 domain 0.61 50.0 4.98e-01 95.5% 90.0%
4083689 283.2.1.1 ↗ a+b duplicates or obligate multimers › Creatinase/aminopeptidase-like › gpW/gp25-like › gpW/gp25-like › GPW_gp25 0.60 42.0 3.93e-01 71.9% 75.2%
3727954 3257.1.1.1 ↗ a+b complex topology › Phosphoinositide phosphatase SAC1 N-terminal domain › Phosphoinositide phosphatase SAC1 N-terminal domain › Phosphoinositide phosphatase SAC1 N-terminal domain › Syja_N 0.60 44.0 3.24e-01 76.4% 94.2%
139092 5.1.4.14 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Peptidase_S9_N 0.60 43.0 2.79e-01 75.3% 24.2%
2022 12.3.1.16 ↗ beta sandwiches › Glycosyl hydrolase domain-like › supersandwich › supersandwich › Glucodextran_N 0.59 52.0 3.67e-01 96.6% 68.6%
3691227 216.1.1.4 ↗ a+b two layers › UBC-like › UBC-like › UBC-like › RWD 0.59 50.0 4.70e-01 98.9% 93.9%
3961733 330.10.1.0 ↗ a+b two layers › dsRBD-like › Heterocyclase TruD C-terminal domain › Heterocyclase TruD C-terminal domain 0.58 45.0 4.50e-01 95.5% 82.2%
3177251 216.1.1.41 ↗ a+b two layers › UBC-like › UBC-like › UBC-like › PF29959 0.58 50.0 4.23e-01 98.9% 74.2%
3506907 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.58 38.0 3.65e-01 74.2% 58.0%
3273270 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.57 41.0 3.02e-01 77.5% 66.7%
3238801 2484.1.1.200 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › FTH 0.56 49.0 3.09e-01 93.3% 80.2%
3607725 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.56 50.0 3.26e-01 98.9% 26.9%
3639845 214.1.1.6 ↗ a+b two layers › SH2 › SH2 › SH2 › SH2_2 0.56 49.0 4.57e-01 97.8% 88.2%
4372560 71.1.1.6 ↗ beta meanders › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › LppX_LprAFG 0.55 41.0 3.16e-01 78.7% 44.6%
3784539 214.1.1.6 ↗ a+b two layers › SH2 › SH2 › SH2 › SH2_2 0.55 47.0 4.46e-01 97.8% 85.5%
2132873 214.1.1.6 ↗ a+b two layers › SH2 › SH2 › SH2 › SH2_2 0.55 47.0 4.45e-01 97.8% 85.3%
3213942 214.1.1.1 ↗ a+b two layers › SH2 › SH2 › SH2 › SH2 0.55 47.0 4.46e-01 100.0% 94.5%
3243855 214.1.1.6 ↗ a+b two layers › SH2 › SH2 › SH2 › SH2_2 0.54 46.0 4.48e-01 96.6% 93.0%
4125992 206.1.1.10 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Choline_kinase 0.54 45.0 3.13e-01 93.3% 30.3%
3213146 214.1.1.1 ↗ a+b two layers › SH2 › SH2 › SH2 › SH2 0.54 47.0 4.43e-01 100.0% 94.5%
5069904 213.1.1.0 ↗ a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) 0.54 43.0 3.76e-01 88.8% 84.3%
3934561 216.1.1.0 ↗ a+b two layers › UBC-like › UBC-like › UBC-like 0.53 46.0 3.87e-01 100.0% 87.5%
3257870 331.9.1.0 ↗ a+b two layers › TBP-like › Subdomain of clathrin and coatomer appendage domain › Subdomain of clathrin and coatomer appendage domain 0.53 42.0 3.60e-01 85.4% 92.3%
3542444 214.1.1.1 ↗ a+b two layers › SH2 › SH2 › SH2 › SH2 0.53 46.0 3.89e-01 100.0% 65.2%
3766764 214.1.1.0 ↗ a+b two layers › SH2 › SH2 › SH2 0.53 45.0 3.29e-01 100.0% 35.4%
2410563 214.1.1.1 ↗ a+b two layers › SH2 › SH2 › SH2 › SH2 0.53 36.0 3.06e-01 70.8% 71.5%
D2 high residues 100-154
PDB
Domain cluster: rep: hypothetical_protein_D1R32_gp478__YP_009507240__Tunisvirus_fontaine2__1421067__D102-153