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hypothetical_protein_MEL_114

Euk-Vir

Melbournevirus

hypothetical_protein_MEL_114__YP_009094615__Melbournevirus__1560514

Identity

Accession:
YP_009094615 ↗
Protein ID:
hypothetical_protein_MEL_114
Kingdom:
euk

Quality

71.0 mean pLDDT

Taxonomy

Bamfordvirae› Nucleocytoviricota› Megaviricetes› Pimascovirales› Marseilleviridae› Marseillevirus› Marseillevirus_sp._'Melbournevirus'

TaxID: 1560514

Cluster

View cluster (6 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 2-92
PDB
Domain cluster: rep: ORF25__YP_009330157__Plodia_interpunctella_granulovirus__262175__D321-425
CATH (13)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4ls9B02 3.10.310.30 Alpha Beta › Roll › Diaminopimelate Epimerase; Chain A, domain 1 › 0.64 42.0 3.87e-01 98.9% 50.4%
1zpwX00 3.30.70.240 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.63 39.0 4.06e-01 84.6% 67.1%
1vw4U00 3.30.1390.20 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein L30; Chain: A, › Ribosomal protein L30/L7 0.57 39.0 4.07e-01 70.3% 87.8%
1s12A00 3.30.70.1490 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Cysteine protease Prp 0.55 43.0 4.27e-01 100.0% 81.9%
2fmyA02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.55 42.0 4.43e-01 94.5% 93.9%
1vjoA01 3.90.1150.10 Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 0.53 42.0 3.76e-01 95.6% 60.3%
2dkhA01 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.52 45.0 3.32e-01 97.8% 91.8%
1g4wR02 3.90.190.10 Alpha Beta › Alpha-Beta Complex › Protein-Tyrosine Phosphatase; Chain A › Protein tyrosine phosphatase superfamily 0.52 35.0 2.77e-01 70.3% 54.8%
1nh8A03 3.30.70.120 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.52 34.0 3.77e-01 80.2% 89.6%
1lkxC03 1.20.120.720 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Myosin VI head, motor domain, U50 subdomain 0.51 38.0 3.64e-01 100.0% 67.3%
1vdxA00 3.90.1140.10 Alpha Beta › Alpha-Beta Complex › Cyclic Phosphodiesterase; Chain: A, › Cyclic phosphodiesterase 0.51 45.0 3.62e-01 100.0% 62.0%
3tf8B00 3.90.1520.10 Alpha Beta › Alpha-Beta Complex › H-NOX domain › H-NOX domain 0.51 33.0 2.71e-01 93.4% 33.2%
6ovbA03 2.100.10.10 Mainly Beta › Aligned Prism › Vitelline Membrane Outer Layer Protein I, subunit A › Pesticidal crystal protein, central domain 0.51 43.0 3.48e-01 100.0% 47.1%
ECOD (18)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3989300 821.1.1.3 ↗ a+b three layers › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG endonuclease › T5orf172 0.74 68.0 6.35e-01 100.0% 94.5%
3197583 821.1.1.10 ↗ a+b three layers › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG endonuclease › MUG113 0.74 68.0 5.23e-01 100.0% 78.8%
3698242 821.1.1.10 ↗ a+b three layers › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG endonuclease › MUG113 0.69 64.0 5.73e-01 100.0% 78.0%
4016088 821.1.1.3 ↗ a+b three layers › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG endonuclease › T5orf172 0.68 61.0 5.87e-01 100.0% 98.1%
3402554 632.7.1.64 ↗ alpha bundles › immunoglobulin/albumin-binding domain-like › Heat shock protein 70kD (HSP70), C-terminal subdomain › Heat shock protein 70kD (HSP70), C-terminal subdomain › Med15_C 0.67 46.0 4.38e-01 100.0% 59.1%
3474580 11.1.6.2 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › UPA domain › UPA_2 0.65 58.0 4.96e-01 98.9% 92.4%
3885877 11.1.6.5 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › UPA domain › UPA-FIIND 0.64 57.0 5.06e-01 98.9% 82.3%
3237553 11.1.6.1 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › UPA domain › UPA 0.63 57.0 4.97e-01 98.9% 93.3%
3932992 11.1.6.2 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › UPA domain › UPA_2 0.63 57.0 4.97e-01 98.9% 92.6%
5069226 267.1.1.3 ↗ a+b complex topology › Metal cation-transporting ATPase, ATP-binding domain › Metal cation-transporting ATPase, ATP-binding domain › Metal cation-transporting ATPase, ATP-binding domain › Cation_ATPase 0.61 42.0 2.86e-01 72.5% 29.3%
3776086 306.10.1.5 ↗ a+b two layers › Glucose permease domain IIB-like › H1 domain of KCTD12 › H1 domain of KCTD12 › PF31088 0.59 46.0 4.09e-01 100.0% 59.2%
3590858 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.56 29.0 3.36e-01 86.8% 70.0%
4589701 3016.1.1.10 ↗ a+b two layers › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases › GDC-P 0.55 39.0 4.18e-01 97.8% 85.0%
3649276 887.1.1.0 ↗ a+b two layers › Ribosomal protein L30p/L7e › Ribosomal protein L30p/L7e › Ribosomal protein L30p/L7e 0.55 43.0 3.97e-01 84.6% 100.0%
4944359 304.56.1.0 ↗ a+b two layers › Alpha-beta plaits › CRISPR associated protein Cas2-like › CRISPR associated protein Cas2-like 0.53 38.0 3.96e-01 76.9% 96.5%
4625411 2006.1.1.7 ↗ a/b three-layered sandwiches › HAD domain-like › HAD domain-related › HAD-like › S6PP 0.53 37.0 2.79e-01 72.5% 71.8%
3588727 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.53 27.0 3.05e-01 87.9% 61.4%
4568770 304.56.1.2 ↗ a+b two layers › Alpha-beta plaits › CRISPR associated protein Cas2-like › CRISPR associated protein Cas2-like › CRISPR_Cas2 0.52 38.0 3.90e-01 78.0% 97.6%