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hypothetical_protein_MEL_156

Euk-Vir

Melbournevirus

hypothetical_protein_MEL_156__YP_009094657__Melbournevirus__1560514

Identity

Accession:
YP_009094657 ↗
Protein ID:
hypothetical_protein_MEL_156
Kingdom:
euk

Quality

78.9 mean pLDDT

Taxonomy

Bamfordvirae› Nucleocytoviricota› Megaviricetes› Pimascovirales› Marseilleviridae› Marseillevirus› Marseillevirus_sp._'Melbournevirus'

TaxID: 1560514

Cluster

View cluster (37 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 36-116
PDB
Domain cluster: representative
CATH (50)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4r80A00 3.10.450.630 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.71 45.0 4.62e-01 75.3% 68.4%
1l3aA00 2.30.31.10 Mainly Beta › Roll › Transcriptional Co-activator pc4; Chain A › Transcriptional Coactivator Pc4; Chain A 0.70 52.0 4.02e-01 80.2% 37.3%
3fzxA00 2.40.360.20 Mainly Beta › Beta Barrel › YmcC-like fold › 0.68 47.0 3.45e-01 80.2% 27.4%
2oq8A00 2.60.40.2930 Mainly Beta › Sandwich › Immunoglobulin-like › 0.67 53.0 4.28e-01 84.0% 90.0%
2owpA00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.66 47.0 4.03e-01 79.0% 46.5%
3esiA00 3.10.129.10 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase 0.66 56.0 4.76e-01 90.1% 91.9%
1yvuA04 3.30.420.10 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H 0.65 52.0 3.80e-01 85.2% 99.5%
3g0kA00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.65 46.0 3.99e-01 81.5% 46.9%
1lshB00 2.20.90.10 Mainly Beta › Single Sheet › Lipovitellin-phosvitin complex; beta-sheet shell regions › Vitellinogen, beta-sheet shell domain 0.64 53.0 4.11e-01 88.9% 42.0%
1t5rB00 2.70.240.10 Mainly Beta › Distorted Sandwich › Leukocidin-like › Leukocidin/porin MspA 0.64 49.0 3.37e-01 81.5% 80.4%
2i99A01 3.30.1780.10 Alpha Beta › 2-Layer Sandwich › ornithine cyclodeaminase, domain 1 › ornithine cyclodeaminase, domain 1 0.63 58.0 4.67e-01 100.0% 57.3%
3fkaB00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.63 40.0 3.51e-01 75.3% 43.3%
3ke7B00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.62 45.0 3.78e-01 80.2% 45.9%
7wffb01 2.70.98.10 Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › 0.62 52.0 3.51e-01 91.4% 71.2%
4xmeA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.62 47.0 3.64e-01 92.6% 35.9%
2zylA02 3.90.380.10 Alpha Beta › Alpha-Beta Complex › Naphthalene 1,2-dioxygenase Alpha Subunit; Chain A, domain 1 › Naphthalene 1,2-dioxygenase Alpha Subunit; Chain A, domain 1 0.62 53.0 3.86e-01 93.8% 37.8%
3fgyA00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.61 43.0 3.59e-01 85.2% 43.7%
2xn1A01 2.70.98.60 Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › alpha-galactosidase from lactobacil brevis 0.61 55.0 3.68e-01 100.0% 76.8%
1yq2A05 2.70.98.10 Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › 0.61 53.0 3.56e-01 95.1% 71.7%
3kspA00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.61 43.0 3.67e-01 76.5% 46.5%
3hdjA01 3.30.1780.10 Alpha Beta › 2-Layer Sandwich › ornithine cyclodeaminase, domain 1 › ornithine cyclodeaminase, domain 1 0.60 48.0 4.08e-01 100.0% 51.4%
3fsdA00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.59 43.0 3.72e-01 75.3% 51.2%
6secA03 2.70.98.10 Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › 0.59 52.0 3.58e-01 98.8% 78.2%
2oojA00 2.40.350.10 Mainly Beta › Beta Barrel › AOC barrel-like › SO1590-like 0.59 47.0 4.05e-01 88.9% 54.2%
4lmiB00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.59 43.0 3.63e-01 77.8% 47.8%
3mi6A01 2.70.98.60 Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › alpha-galactosidase from lactobacil brevis 0.58 49.0 3.36e-01 95.1% 50.8%
2bngC00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.58 44.0 3.69e-01 81.5% 55.7%
6jhpA01 2.70.98.60 Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › alpha-galactosidase from lactobacil brevis 0.58 48.0 3.33e-01 93.8% 52.5%
2k54A00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.58 42.0 3.70e-01 80.2% 51.2%
1hq0A00 3.60.100.10 Alpha Beta › 4-Layer Sandwich › Cytotoxic necrotizing factor 1 (CNF1) › Cytotoxic necrotizing factor, Rho-activating domain 0.58 44.0 3.09e-01 85.2% 90.8%
3obaA05 2.70.98.10 Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › 0.57 50.0 3.47e-01 98.8% 74.7%
2lfuA02 2.40.160.90 Mainly Beta › Beta Barrel › Porin › 0.57 47.0 3.96e-01 88.9% 55.0%
3e99A00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.56 44.0 3.69e-01 90.1% 48.0%
3hzpA00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.56 41.0 3.54e-01 77.8% 49.6%
3os7A00 2.70.98.10 Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › 0.55 50.0 3.30e-01 100.0% 70.6%
3ef8A00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.55 46.0 3.82e-01 92.6% 54.7%
7f13A01 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.55 42.0 3.50e-01 87.7% 46.5%
1tp6A00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.54 40.0 3.45e-01 86.4% 50.0%
1ylxA00 3.30.70.1480 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › GK1464-like 0.54 39.0 3.77e-01 91.4% 65.7%
3ecqA02 2.70.98.10 Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › 0.54 44.0 3.11e-01 90.1% 72.7%
2n8xA00 3.30.160.150 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Lipoprotein like domain 0.54 42.0 3.37e-01 85.2% 69.9%
2lyxA00 3.10.450.390 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › Protein of unknown function DUF3889 0.54 43.0 4.22e-01 86.4% 100.0%
1of5A00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.54 44.0 3.55e-01 88.9% 81.8%
3r8qA03 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.53 36.0 3.55e-01 70.4% 82.0%
6mfaA01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.53 37.0 3.82e-01 88.9% 73.4%
4pn0C00 3.20.100.10 Alpha Beta › Alpha-Beta Barrel › mRNA Triphosphatase Cet1; Chain A › mRNA triphosphatase Cet1-like 0.53 46.0 3.22e-01 95.1% 61.7%
3dm8A00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.53 40.0 3.43e-01 82.7% 50.4%
1tdqA02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.52 36.0 3.46e-01 70.4% 83.3%
4j8tA00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.51 37.0 3.25e-01 77.8% 53.9%
4n6tA00 3.10.450.10 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.51 40.0 4.14e-01 85.2% 98.7%
ECOD (50)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3559952 71.2.1.4 ↗ beta meanders › Lipoprotein localization factors LolAB › PA1994-like › PA1994-like › CATIP_N 0.73 56.0 3.96e-01 93.8% 27.5%
4505397 5087.1.1.0 ↗ beta meanders › Lipovitellin-phosvitin complex › Lipovitellin LV-2 › Lipovitellin LV-2 0.70 60.0 4.26e-01 93.8% 45.4%
4350660 5087.1.1.0 ↗ beta meanders › Lipovitellin-phosvitin complex › Lipovitellin LV-2 › Lipovitellin LV-2 0.69 62.0 4.19e-01 100.0% 60.0%
5071336 243.1.1.0 ↗ a+b two layers › Cystatin-like › NTF2-like › NTF2-like 0.68 47.0 4.03e-01 79.0% 45.3%
4152335 9.2.1.1 ↗ beta barrels › Lipocalins/Streptavidin › Avidin/Streptavidin › Avidin/Streptavidin › Avidin 0.68 56.0 4.85e-01 91.4% 58.1%
4025435 4051.1.1.2 ↗ a+b two layers › a+b domain in Capz › a+b domain in Capz › a+b domain in Capz › F-actin_cap_A 0.68 61.0 4.61e-01 100.0% 50.5%
5014022 71.1.1.0 ↗ beta meanders › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB 0.67 44.0 3.23e-01 76.5% 26.2%
3251351 243.1.1.2 ↗ a+b two layers › Cystatin-like › NTF2-like › NTF2-like › NTF2 0.67 45.0 3.89e-01 76.5% 46.7%
5042975 2004.1.1.198 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_23 0.67 57.0 4.25e-01 92.6% 61.0%
3243473 5087.1.1.0 ↗ beta meanders › Lipovitellin-phosvitin complex › Lipovitellin LV-2 › Lipovitellin LV-2 0.66 59.0 4.20e-01 100.0% 58.4%
3718960 4051.1.1.2 ↗ a+b two layers › a+b domain in Capz › a+b domain in Capz › a+b domain in Capz › F-actin_cap_A 0.66 56.0 4.11e-01 92.6% 53.3%
3788774 4051.1.1.2 ↗ a+b two layers › a+b domain in Capz › a+b domain in Capz › a+b domain in Capz › F-actin_cap_A 0.66 52.0 4.25e-01 84.0% 69.0%
3803981 243.1.1.25 ↗ a+b two layers › Cystatin-like › NTF2-like › NTF2-like › SnoaL_3 0.66 46.0 3.76e-01 79.0% 40.7%
4945458 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.65 45.0 4.28e-01 76.5% 60.2%
1569478 527.1.1.1 ↗ beta sandwiches › Soluble secreted chemokine inhibitor, VCCI › Soluble secreted chemokine inhibitor, VCCI › Soluble secreted chemokine inhibitor, VCCI › Orthopox_35kD 0.65 44.0 3.55e-01 70.4% 65.4%
3548538 11.1.1.99 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › V-set 0.65 56.0 3.84e-01 93.8% 38.1%
3739953 4051.1.1.2 ↗ a+b two layers › a+b domain in Capz › a+b domain in Capz › a+b domain in Capz › F-actin_cap_A 0.64 55.0 4.39e-01 92.6% 57.4%
4880355 11.1.1.11 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Usher 0.64 52.0 4.68e-01 87.7% 69.4%
3096198 3692.1.1.0 ↗ a+b two layers › Ornithine cyclodeaminase-like enzymes dimerization domain › Ornithine cyclodeaminase-like enzymes dimerization domain › Ornithine cyclodeaminase-like enzymes dimerization domain 0.64 54.0 4.94e-01 100.0% 70.4%
3985235 5084.10.1.1 ↗ beta barrels › Outer membrane meander beta-barrels › LPS-assembly protein LptD › LPS-assembly protein LptD › LptD 0.63 56.0 3.36e-01 100.0% 18.4%
3282130 3692.1.1.0 ↗ a+b two layers › Ornithine cyclodeaminase-like enzymes dimerization domain › Ornithine cyclodeaminase-like enzymes dimerization domain › Ornithine cyclodeaminase-like enzymes dimerization domain 0.62 53.0 4.47e-01 98.8% 55.4%
3489236 243.1.1.12 ↗ a+b two layers › Cystatin-like › NTF2-like › NTF2-like › TIM21 0.62 51.0 4.62e-01 87.7% 72.4%
4381748 241.1.1.2 ↗ a+b two layers › Type III secretory system chaperone-like › Type III secretory system chaperone › Type III secretory system chaperone › Autophagy_act_C 0.62 56.0 4.09e-01 100.0% 60.5%
2014 12.3.1.6 ↗ beta sandwiches › Glycosyl hydrolase domain-like › supersandwich › supersandwich › Bgal_small_N 0.61 53.0 3.55e-01 95.1% 71.2%
3699994 243.1.1.0 ↗ a+b two layers › Cystatin-like › NTF2-like › NTF2-like 0.61 49.0 4.17e-01 87.7% 54.1%
3403847 9.1.1.47 ↗ beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins › Chitin_bind_4 0.61 46.0 4.45e-01 91.4% 73.3%
3181990 883.1.1.23 ↗ a+b complex topology › Aha1/BPI domain-like › Aha1/BPI domain-like › Aha1/BPI domain-like › HAM1_C, HAM1_N 0.60 54.0 3.80e-01 100.0% 66.8%
3168116 12.3.1.3 ↗ beta sandwiches › Glycosyl hydrolase domain-like › supersandwich › supersandwich › Aldose_epim 0.60 50.0 3.25e-01 90.1% 67.7%
3720662 883.1.1.23 ↗ a+b complex topology › Aha1/BPI domain-like › Aha1/BPI domain-like › Aha1/BPI domain-like › HAM1_C, HAM1_N 0.59 54.0 4.01e-01 100.0% 88.5%
3920557 4210.1.1.3 ↗ a+b two layers › WGR domain › WGR domain › WGR domain › PF26166 0.59 43.0 4.11e-01 80.2% 65.3%
3234838 243.1.1.28 ↗ a+b two layers › Cystatin-like › NTF2-like › NTF2-like › DUF4440 0.59 40.0 3.54e-01 84.0% 47.5%
2141857 12.3.1.6 ↗ beta sandwiches › Glycosyl hydrolase domain-like › supersandwich › supersandwich › Bgal_small_N 0.58 52.0 3.53e-01 98.8% 75.3%
4978730 243.1.1.22 ↗ a+b two layers › Cystatin-like › NTF2-like › NTF2-like › Lumazine_bd_2 0.58 38.0 3.33e-01 74.1% 44.2%
4937710 243.1.1.18 ↗ a+b two layers › Cystatin-like › NTF2-like › NTF2-like › SnoaL_2 0.58 40.0 3.55e-01 85.2% 49.6%
None — 0.58 49.0 3.38e-01 95.1% 53.6%
1221505 12.3.1.6 ↗ beta sandwiches › Glycosyl hydrolase domain-like › supersandwich › supersandwich › Bgal_small_N 0.58 50.0 3.45e-01 98.8% 73.5%
3291354 243.1.1.26 ↗ a+b two layers › Cystatin-like › NTF2-like › NTF2-like › SnoaL_4 0.57 48.0 3.71e-01 93.8% 63.2%
3287036 331.3.1.27 ↗ a+b two layers › TBP-like › Bet v1-like › Bet v1-like › DUF2505 0.57 49.0 3.86e-01 95.1% 49.4%
3512269 79.1.1.16 ↗ beta duplicates or obligate multimers › Phage tail fiber protein trimerization domain › Phage tail fiber protein trimerization domain › Phage tail fiber protein trimerization domain › DUF1983 0.56 45.0 4.36e-01 88.9% 81.1%
3708150 5.1.3.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed 0.56 44.0 2.88e-01 86.4% 30.3%
3638957 3561.1.1.1 ↗ a+b complex topology › Mediator of RNA polymerase II transcription subunit 17 › Mediator of RNA polymerase II transcription subunit 17 › Mediator of RNA polymerase II transcription subunit 17 › Med17 0.56 47.0 2.83e-01 91.4% 28.8%
3408261 243.3.1.35 ↗ a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin › DUF229 0.55 43.0 3.61e-01 84.0% 56.1%
3271615 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.55 45.0 2.83e-01 88.9% 24.3%
3281686 331.3.1.27 ↗ a+b two layers › TBP-like › Bet v1-like › Bet v1-like › DUF2505 0.55 48.0 3.84e-01 97.5% 50.9%
3742062 883.1.1.23 ↗ a+b complex topology › Aha1/BPI domain-like › Aha1/BPI domain-like › Aha1/BPI domain-like › HAM1_C, HAM1_N 0.55 48.0 3.45e-01 100.0% 78.0%
5077103 5.1.11.2 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 9-bladed › PQQ_2 0.54 45.0 2.79e-01 90.1% 21.1%
4445572 4099.1.1.22 ↗ a+b two layers › Kinetochore globular domain-like › Kinetochore globular domain-like › Kinetochore globular domain-like › CENP-P 0.54 48.0 4.09e-01 98.8% 70.8%
3808862 243.1.1.2 ↗ a+b two layers › Cystatin-like › NTF2-like › NTF2-like › NTF2 0.54 46.0 3.93e-01 97.5% 98.6%
3801133 243.1.1.0 ↗ a+b two layers › Cystatin-like › NTF2-like › NTF2-like 0.53 44.0 3.74e-01 88.9% 95.3%
4074364 243.1.1.0 ↗ a+b two layers › Cystatin-like › NTF2-like › NTF2-like 0.53 40.0 3.43e-01 80.2% 50.0%