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hypothetical_protein_MEL_384

Euk-Vir

Melbournevirus

hypothetical_protein_MEL_384__YP_009094885__Melbournevirus__1560514

Identity

Accession:
YP_009094885 ↗
Protein ID:
hypothetical_protein_MEL_384
Kingdom:
euk

Quality

77.4 mean pLDDT

Taxonomy

Bamfordvirae› Nucleocytoviricota› Megaviricetes› Pimascovirales› Marseilleviridae› Marseillevirus› Marseillevirus_sp._'Melbournevirus'

TaxID: 1560514

Cluster

View cluster (11 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 21-101
PDB
Domain cluster: rep: hypothetical_protein_LAU_0433__YP_004347395__Lausannevirus__999883__D32-126
CATH (33)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3uh0A02 3.40.50.800 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Anticodon-binding domain 0.68 61.0 5.31e-01 100.0% 85.5%
2od0A00 3.30.1460.30 Alpha Beta › 2-Layer Sandwich › Yope Regulator; Chain: A, › YgaC/TfoX-N like chaperone 0.68 58.0 5.34e-01 93.8% 97.1%
2plgA01 3.30.1460.10 Alpha Beta › 2-Layer Sandwich › Yope Regulator; Chain: A, › 0.66 54.0 4.62e-01 90.1% 91.7%
1omoA01 3.30.1780.10 Alpha Beta › 2-Layer Sandwich › ornithine cyclodeaminase, domain 1 › ornithine cyclodeaminase, domain 1 0.63 46.0 3.77e-01 76.5% 76.5%
4jpdA00 3.30.920.10 Alpha Beta › 2-Layer Sandwich › Metal Transport, Frataxin; Chain A › Frataxin/CyaY 0.63 56.0 5.09e-01 100.0% 89.9%
6efaA02 3.10.20.890 Alpha Beta › Roll › Ubiquitin-like (UB roll) › 0.61 40.0 4.14e-01 82.7% 70.5%
4fr9A00 3.10.450.360 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.61 45.0 3.76e-01 77.8% 66.0%
1ekgA00 3.30.920.10 Alpha Beta › 2-Layer Sandwich › Metal Transport, Frataxin; Chain A › Frataxin/CyaY 0.59 51.0 4.56e-01 100.0% 85.7%
2el8A01 3.30.505.10 Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain 0.59 41.0 4.01e-01 72.8% 79.1%
4jg9A00 2.60.40.3830 Mainly Beta › Sandwich › Immunoglobulin-like › 0.58 40.0 3.45e-01 74.1% 86.3%
3aeiA00 1.10.287.370 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.58 32.0 3.06e-01 100.0% 46.8%
2ogqA01 3.30.1120.30 Alpha Beta › 2-Layer Sandwich › Arylsulfatase, C-terminal domain › POLO box domain 0.58 50.0 4.33e-01 97.5% 87.3%
6g4bA01 3.90.1150.10 Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 0.57 50.0 3.97e-01 100.0% 62.6%
4grhA00 3.60.120.10 Alpha Beta › 4-Layer Sandwich › Anthranilate synthase › Anthranilate synthase 0.57 41.0 2.56e-01 75.3% 34.2%
4immA00 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.57 39.0 2.64e-01 72.8% 20.5%
3vn5A01 3.30.310.10 Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › TATA-Binding Protein 0.57 40.0 4.23e-01 86.4% 85.5%
1tltA02 3.30.360.10 Alpha Beta › 2-Layer Sandwich › Dihydrodipicolinate Reductase; domain 2 › Dihydrodipicolinate Reductase; domain 2 0.57 47.0 3.67e-01 100.0% 40.9%
3uuwB02 3.30.360.10 Alpha Beta › 2-Layer Sandwich › Dihydrodipicolinate Reductase; domain 2 › Dihydrodipicolinate Reductase; domain 2 0.56 47.0 3.65e-01 100.0% 41.3%
3bypA00 3.30.70.1350 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Cation efflux protein, cytoplasmic domain 0.55 38.0 3.79e-01 71.6% 90.2%
2joiA00 3.30.310.190 Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › 0.55 41.0 3.91e-01 80.2% 74.0%
2q07A02 3.10.450.90 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › ArcTGT, C2 domain 0.55 39.0 4.29e-01 95.1% 95.4%
1e2tA02 3.30.1120.150 Alpha Beta › 2-Layer Sandwich › Arylsulfatase, C-terminal domain › 0.54 37.0 3.67e-01 70.4% 75.6%
4py5A01 3.30.310.10 Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › TATA-Binding Protein 0.54 39.0 4.06e-01 81.5% 84.7%
3p2mA00 3.40.50.1820 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain 0.53 44.0 3.14e-01 96.3% 81.9%
2ymsA00 2.40.128.630 Mainly Beta › Beta Barrel › Lipocalin › 0.53 39.0 3.45e-01 79.0% 84.7%
1yr1A00 3.40.50.10960 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.53 40.0 3.65e-01 97.5% 58.0%
1hlcA00 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.53 37.0 3.21e-01 74.1% 93.8%
1c1fA00 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.53 37.0 3.18e-01 74.1% 95.6%
1yqeA01 3.40.630.50 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › AF0625-like 0.53 43.0 3.41e-01 93.8% 93.5%
1ukfA00 3.90.70.20 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › 0.52 39.0 3.08e-01 92.6% 35.6%
6vp6A03 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.52 37.0 2.61e-01 80.2% 38.7%
4n9jA02 3.30.1120.130 Alpha Beta › 2-Layer Sandwich › Arylsulfatase, C-terminal domain › 0.52 40.0 3.69e-01 91.4% 63.6%
1iwmA00 2.50.20.10 Mainly Beta › Clam › outer membrane lipoprotein receptor (LolB), chain A › Lipoprotein localisation LolA/LolB/LppX 0.51 42.0 3.39e-01 95.1% 46.3%
ECOD (44)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4001272 3561.1.1.0 ↗ a+b complex topology › Mediator of RNA polymerase II transcription subunit 17 › Mediator of RNA polymerase II transcription subunit 17 › Mediator of RNA polymerase II transcription subunit 17 0.72 64.0 3.94e-01 100.0% 23.4%
6637 241.1.1.6 ↗ a+b two layers › Type III secretory system chaperone-like › Type III secretory system chaperone › Type III secretory system chaperone › YbjN 0.68 55.0 4.53e-01 90.1% 80.3%
5059099 241.2.1.0 ↗ a+b two layers › Type III secretory system chaperone-like › Frataxin-like › Frataxin-like 0.67 56.0 5.52e-01 93.8% 97.7%
3970136 241.2.1.0 ↗ a+b two layers › Type III secretory system chaperone-like › Frataxin-like › Frataxin-like 0.65 57.0 5.27e-01 100.0% 93.3%
3946113 241.7.1.1 ↗ a+b two layers › Type III secretory system chaperone-like › YgaC/TfoX-N like › YgaC/TfoX-N like › TfoX_N 0.65 54.0 4.99e-01 92.6% 95.2%
3517889 331.23.1.0 ↗ a+b two layers › TBP-like › Integrator IntS9/IntS11 C-terminal domain › Integrator IntS9/IntS11 C-terminal domain 0.65 52.0 4.77e-01 86.4% 79.8%
3301714 12.3.1.6 ↗ beta sandwiches › Glycosyl hydrolase domain-like › supersandwich › supersandwich › Bgal_small_N 0.64 47.0 3.11e-01 76.5% 95.5%
3289062 243.3.1.0 ↗ a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin 0.64 48.0 4.67e-01 80.2% 93.3%
4479376 241.2.1.1 ↗ a+b two layers › Type III secretory system chaperone-like › Frataxin-like › Frataxin-like › Frataxin_Cyay 0.63 55.0 4.96e-01 100.0% 86.1%
4269649 241.2.1.1 ↗ a+b two layers › Type III secretory system chaperone-like › Frataxin-like › Frataxin-like › Frataxin_Cyay 0.62 53.0 4.85e-01 98.8% 89.1%
3481105 12.3.1.0 ↗ beta sandwiches › Glycosyl hydrolase domain-like › supersandwich › supersandwich 0.62 54.0 3.69e-01 98.8% 89.9%
3706802 5.1.3.116 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › Kelch_KLHDC2_KLHL20_DRC7 0.61 43.0 2.85e-01 74.1% 25.0%
4426204 331.23.1.7 ↗ a+b two layers › TBP-like › Integrator IntS9/IntS11 C-terminal domain › Integrator IntS9/IntS11 C-terminal domain › CPSF73-100_C 0.61 46.0 4.61e-01 81.5% 78.8%
4193772 331.1.1.13 ↗ a+b two layers › TBP-like › TATA-box binding protein-like › TATA-box binding protein-like › CPSF73-100_C 0.60 46.0 4.57e-01 81.5% 77.6%
4679871 331.1.1.6 ↗ a+b two layers › TBP-like › TATA-box binding protein-like › TATA-box binding protein-like › DUF3378 0.57 41.0 4.14e-01 84.0% 75.0%
3900505 243.3.1.1 ↗ a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin › Cystatin 0.57 47.0 4.21e-01 92.6% 86.6%
4981259 243.6.1.1 ↗ a+b two layers › Cystatin-like › Pre-PUA domain › Pre-PUA domain › DUF1947 0.57 39.0 4.28e-01 85.2% 89.2%
4938289 298.1.1.0 ↗ a+b two layers › FwdE/GAPDH domain-like › Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain › Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain 0.56 48.0 3.54e-01 98.8% 57.0%
3233883 5.1.4.40 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › PQQ_2 0.55 40.0 2.60e-01 75.3% 29.1%
4982613 331.1.1.0 ↗ a+b two layers › TBP-like › TATA-box binding protein-like › TATA-box binding protein-like 0.55 40.0 4.44e-01 86.4% 96.9%
3173084 331.1.1.13 ↗ a+b two layers › TBP-like › TATA-box binding protein-like › TATA-box binding protein-like › CPSF73-100_C 0.55 42.0 4.14e-01 84.0% 77.6%
3416069 331.1.1.0 ↗ a+b two layers › TBP-like › TATA-box binding protein-like › TATA-box binding protein-like 0.54 35.0 3.72e-01 81.5% 75.7%
5027368 243.6.1.1 ↗ a+b two layers › Cystatin-like › Pre-PUA domain › Pre-PUA domain › DUF1947 0.54 37.0 4.01e-01 82.7% 89.2%
3941928 3822.1.1.1 ↗ alpha complex topology › Intergenic-region protein › Intergenic-region protein › Intergenic-region protein › Antirestrict 0.54 43.0 3.82e-01 91.4% 89.6%
3604573 5.1.4.40 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › PQQ_2 0.54 40.0 2.41e-01 81.5% 16.9%
2696975 6129.1.1.0 ↗ beta barrels › Repulsive guidance molecule (RGM) family › Repulsive guidance molecule (RGM) family › Repulsive guidance molecule (RGM) family 0.54 40.0 3.03e-01 80.2% 45.2%
5014724 295.1.1.51 ↗ a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain › FtsQ_DivIB_C 0.53 35.0 3.29e-01 82.7% 53.0%
5067171 243.6.1.1 ↗ a+b two layers › Cystatin-like › Pre-PUA domain › Pre-PUA domain › DUF1947 0.53 37.0 4.05e-01 77.8% 89.2%
4603837 264.1.1.15 ↗ beta barrels › LigT-like › LigT-related › LigT-related › DUF1045 0.53 41.0 3.06e-01 84.0% 50.2%
3505092 243.3.1.0 ↗ a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin 0.53 41.0 3.87e-01 84.0% 71.0%
5045707 243.3.1.0 ↗ a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin 0.53 42.0 4.31e-01 100.0% 97.3%
5067782 331.1.1.0 ↗ a+b two layers › TBP-like › TATA-box binding protein-like › TATA-box binding protein-like 0.52 37.0 3.96e-01 90.1% 88.6%
3326297 2004.1.1.299 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › DUF1995 0.52 42.0 3.16e-01 91.4% 66.2%
7384 219.1.1.21 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Peptidase_C58 0.52 39.0 3.08e-01 92.6% 35.6%
3858984 6129.1.1.1 ↗ beta barrels › Repulsive guidance molecule (RGM) family › Repulsive guidance molecule (RGM) family › Repulsive guidance molecule (RGM) family › VWD 0.52 39.0 2.98e-01 81.5% 44.1%
2141157 59.1.1.4 ↗ beta complex topology › triple barrel › triple barrel › Rap30/74 interaction domains-like › Ctf8 0.52 36.0 3.16e-01 74.1% 83.3%
3586911 101.1.9.0 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain 0.52 41.0 3.97e-01 92.6% 75.8%
5022991 331.1.1.0 ↗ a+b two layers › TBP-like › TATA-box binding protein-like › TATA-box binding protein-like 0.52 42.0 4.09e-01 88.9% 84.4%
3547051 7516.1.1.37 ↗ a/b three-layered sandwiches › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › CHGN 0.51 40.0 3.68e-01 84.0% 71.4%
3563261 5.1.3.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed 0.51 40.0 2.86e-01 88.9% 90.4%
3889534 6129.1.1.1 ↗ beta barrels › Repulsive guidance molecule (RGM) family › Repulsive guidance molecule (RGM) family › Repulsive guidance molecule (RGM) family › VWD 0.51 40.0 3.16e-01 87.7% 70.8%
4946049 79.1.1.0 ↗ beta duplicates or obligate multimers › Phage tail fiber protein trimerization domain › Phage tail fiber protein trimerization domain › Phage tail fiber protein trimerization domain 0.51 34.0 3.46e-01 72.8% 70.0%
3404770 5.1.4.175 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Beta-prop_IFT122_2nd 0.51 38.0 2.77e-01 84.0% 90.7%
4966163 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.51 36.0 3.80e-01 86.4% 82.7%
D2 medium residues 105-151
PDB
Domain cluster: rep: hypothetical_protein_A3303_gp487__YP_009238992__Brazilian_marseillevirus__1813599__D123-171
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF19176.6 best DUF5858 74.5 6.60e-21 93.6% 72.1%