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hypothetical_protein_MIMI_gp0014

Euk-Vir

Acanthamoeba_polyphaga_mimivirus

hypothetical_protein_MIMI_gp0014__YP_003986488__Acanthamoeba_polyphaga_mimivirus__212035

Identity

Accession:
YP_003986488 ↗
Protein ID:
hypothetical_protein_MIMI_gp0014
Kingdom:
euk

Quality

71.0 mean pLDDT

Taxonomy

Bamfordvirae› Nucleocytoviricota› Megaviricetes› Imitervirales› Mimiviridae› Mimivirus› Acanthamoeba_polyphaga_mimivirus

TaxID: 212035

Cluster

View cluster (3 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 6-82
PDB
Domain cluster: rep: hypothetical_protein_MIMI_gp0463__YP_003986937__Acanthamoeba_polyphaga_mimivirus__212035__D6-81
CATH (13)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3hrpA01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.55 37.0 3.53e-01 70.1% 83.2%
3kuzB00 3.10.20.90 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 0.55 40.0 3.62e-01 77.9% 93.6%
2a2jA00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.54 39.0 2.97e-01 76.6% 85.7%
1uctA01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.53 38.0 3.60e-01 75.3% 86.8%
1d2gA02 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.53 42.0 3.29e-01 92.2% 95.7%
1oeyA00 3.10.20.90 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 0.53 38.0 3.82e-01 79.2% 89.0%
3d4rE01 2.40.128.400 Mainly Beta › Beta Barrel › Lipocalin › 0.52 33.0 3.23e-01 92.2% 57.1%
2cdoA00 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.52 40.0 3.40e-01 85.7% 86.2%
2cs4A00 3.10.20.90 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 0.52 38.0 3.63e-01 80.5% 81.1%
1fpqA02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.51 41.0 3.56e-01 100.0% 54.3%
3wa7A00 3.40.50.1820 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain 0.51 39.0 2.46e-01 85.7% 80.1%
2wnvD00 2.60.120.40 Mainly Beta › Sandwich › Jelly Rolls › 0.51 41.0 3.48e-01 89.6% 74.4%
4mi7A00 3.90.70.170 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › 0.50 42.0 3.68e-01 97.4% 94.4%
ECOD (20)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3446121 109.4.1.3478 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_1, PPR_2, DYW_deaminase, Eplus_motif, E_motif, TPR_24 0.57 41.0 2.46e-01 77.9% 54.7%
3440323 109.4.1.1285 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_2, DYW_deaminase, Eplus_motif, E_motif 0.56 40.0 2.41e-01 77.9% 53.6%
3606623 221.1.1.0 ↗ a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like 0.56 43.0 4.54e-01 84.4% 92.9%
3335071 109.4.1.1285 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_2, DYW_deaminase, Eplus_motif, E_motif 0.56 40.0 2.46e-01 77.9% 63.1%
3816405 109.4.1.1383 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_2, PPR_3, DYW_deaminase, Eplus_motif, E_motif 0.56 40.0 2.41e-01 77.9% 58.1%
3497076 221.1.1.0 ↗ a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like 0.55 41.0 3.89e-01 77.9% 92.2%
3676802 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.55 40.0 2.46e-01 77.9% 67.3%
3503544 221.1.1.0 ↗ a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like 0.55 40.0 3.58e-01 76.6% 92.7%
3928444 221.1.1.0 ↗ a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like 0.55 40.0 3.58e-01 79.2% 93.9%
4627913 101.1.2.90 ↗ alpha arrays › HTH › HTH › winged helix domain › HTH_9 0.53 40.0 3.74e-01 88.3% 66.3%
3459406 221.1.1.7 ↗ a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › UBX 0.53 38.0 3.47e-01 76.6% 70.5%
3832603 109.4.1.1267 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_2, DYW_deaminase, E_motif 0.52 38.0 2.29e-01 81.8% 50.5%
3848076 11.1.6.8 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › UPA domain › FIIND 0.51 45.0 3.69e-01 100.0% 64.8%
3252049 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.51 36.0 3.43e-01 75.3% 88.4%
4928022 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.51 39.0 3.57e-01 85.7% 87.2%
3894974 12.5.1.6 ↗ beta sandwiches › Glycosyl hydrolase domain-like › ZU5/Nup98-C/GAIN-B autoproteolytic domain-related › ZU5/Nup98-C/GAIN-B autoproteolytic domain-related › FIIND 0.51 42.0 3.49e-01 92.2% 61.4%
3805667 109.4.1.1267 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_2, DYW_deaminase, E_motif 0.51 37.0 2.17e-01 77.9% 50.7%
3365334 109.4.1.1521 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, DYW_deaminase, Eplus_motif, E_motif 0.50 37.0 2.25e-01 81.8% 53.1%
2709109 2003.1.2.16 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › FAD_binding_3,NAD_binding_8 0.50 39.0 3.09e-01 93.5% 39.5%
3655233 4988.1.1.1 ↗ a+b two layers › Ribosomal protein S8, C-terminal domain › Ribosomal protein S8, C-terminal domain › Ribosomal protein S8, C-terminal domain › Ribosomal_S8 0.50 33.0 3.48e-01 83.1% 80.0%
D2 high residues 129-251
PDB
D3 high residues 284-417
PDB
Domain cluster: rep: hypothetical_protein_MIMI_gp0005__YP_003986479__Acanthamoeba_polyphaga_mimivirus__212035__D288-389
D4 medium residues 436-487
PDB
Domain cluster: representative