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hypothetical_protein_MIMI_gp0185
Euk-VirAcanthamoeba_polyphaga_mimivirus
hypothetical_protein_MIMI_gp0185__YP_003986659__Acanthamoeba_polyphaga_mimivirus__212035
Identity
- Accession:
- YP_003986659 ↗
- Protein ID:
- hypothetical_protein_MIMI_gp0185
- Kingdom:
- euk
Quality
62.0
mean pLDDT
Taxonomy
Bamfordvirae›
Nucleocytoviricota›
Megaviricetes›
Imitervirales›
Mimiviridae›
Mimivirus›
Acanthamoeba_polyphaga_mimivirus
TaxID: 212035
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
medium
residues 42-141
Domain cluster:
representative
CATH (25)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1lhpA00 | 3.40.1190.20 | Alpha Beta › 3-Layer(aba) Sandwich › UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase › Ribokinase | 0.72 | 61.0 | 4.28e-01 | 92.0% | 69.3% |
| 1v1aA00 | 3.40.1190.20 | Alpha Beta › 3-Layer(aba) Sandwich › UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase › Ribokinase | 0.71 | 60.0 | 4.27e-01 | 92.0% | 77.4% |
| 3ry7A00 | 3.40.1190.20 | Alpha Beta › 3-Layer(aba) Sandwich › UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase › Ribokinase | 0.70 | 59.0 | 4.15e-01 | 91.0% | 77.2% |
| 3uboB00 | 3.40.1190.20 | Alpha Beta › 3-Layer(aba) Sandwich › UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase › Ribokinase | 0.70 | 59.0 | 4.14e-01 | 93.0% | 78.3% |
| 2c4kA01 | 3.40.50.2020 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › | 0.69 | 54.0 | 4.51e-01 | 82.0% | 87.4% |
| 3oyzA01 | 3.20.20.60 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Phosphoenolpyruvate-binding domains | 0.69 | 58.0 | 4.30e-01 | 93.0% | 70.1% |
| 1vizA00 | 3.20.20.390 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › FMN-linked oxidoreductases | 0.65 | 56.0 | 4.34e-01 | 95.0% | 66.2% |
| 2abqA00 | 3.40.1190.20 | Alpha Beta › 3-Layer(aba) Sandwich › UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase › Ribokinase | 0.65 | 55.0 | 3.92e-01 | 93.0% | 100.0% |
| 2vy9A00 | 3.30.750.24 | Alpha Beta › 2-Layer Sandwich › Transcription Regulator spoIIAA › STAS domain | 0.64 | 48.0 | 4.59e-01 | 78.0% | 88.6% |
| 2wagA00 | 3.20.20.80 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycosidases | 0.63 | 54.0 | 4.19e-01 | 94.0% | 63.1% |
| 3ndcA01 | 3.40.1010.10 | Alpha Beta › 3-Layer(aba) Sandwich › Cobalt-precorrin-4 Transmethylase; domain 1 › Tetrapyrrole methylase, N-terminal domain | 0.62 | 37.0 | 3.61e-01 | 70.0% | 53.1% |
| 6hfzA01 | 3.40.50.1110 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › SGNH hydrolase | 0.61 | 49.0 | 3.86e-01 | 88.0% | 66.8% |
| 4fs7A00 | 3.80.10.10 | Alpha Beta › Alpha-Beta Horseshoe › Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) › Ribonuclease Inhibitor | 0.60 | 49.0 | 3.41e-01 | 92.0% | 52.0% |
| 3g0oA01 | 3.40.50.720 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain | 0.58 | 49.0 | 4.14e-01 | 91.0% | 100.0% |
| 2w9hA00 | 3.40.430.10 | Alpha Beta › 3-Layer(aba) Sandwich › Dihydrofolate Reductase, subunit A › Dihydrofolate Reductase, subunit A | 0.57 | 39.0 | 3.35e-01 | 90.0% | 45.2% |
| 2wtzC01 | 3.40.1390.10 | Alpha Beta › 3-Layer(aba) Sandwich › Udp-n-acetylmuramoylalanyl-d-glutamate--2,6- Diaminopimelate Ligase; Chain: A, domain 1 › MurE/MurF, N-terminal domain | 0.56 | 44.0 | 4.40e-01 | 85.0% | 85.7% |
| 1o97D02 | 3.40.50.1220 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › TPP-binding domain | 0.56 | 41.0 | 3.84e-01 | 78.0% | 88.1% |
| 3ay3A01 | 3.40.50.720 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain | 0.55 | 46.0 | 3.59e-01 | 93.0% | 95.2% |
| 3kcnB00 | 3.40.50.2300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator | 0.54 | 42.0 | 3.87e-01 | 86.0% | 77.4% |
| 3qy9B01 | 3.40.50.720 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain | 0.53 | 43.0 | 3.97e-01 | 90.0% | 99.3% |
| 7cxsA01 | 3.40.50.720 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain | 0.53 | 45.0 | 3.76e-01 | 97.0% | 72.8% |
| 3iteB01 | 3.40.50.12780 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › ANL, N-terminal domain | 0.53 | 45.0 | 3.04e-01 | 96.0% | 76.3% |
| 2gkgA00 | 3.40.50.2300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator | 0.52 | 41.0 | 3.89e-01 | 86.0% | 86.1% |
| 1amuA01 | 3.40.50.980 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › | 0.51 | 40.0 | 3.38e-01 | 83.0% | 76.4% |
| 2jb9B00 | 3.40.50.2300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator | 0.51 | 38.0 | 3.66e-01 | 83.0% | 86.9% |
ECOD (27)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3261377 | 207.1.1.12 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › FNIP | 0.68 | 60.0 | 3.82e-01 | 100.0% | 27.9% |
| 3267761 | 207.1.1.12 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › FNIP | 0.67 | 56.0 | 3.57e-01 | 93.0% | 27.9% |
| 3256702 | 207.1.1.12 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › FNIP | 0.67 | 58.0 | 3.72e-01 | 95.0% | 34.2% |
| 3253643 | 207.1.1.12 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › FNIP | 0.66 | 58.0 | 3.94e-01 | 96.0% | 48.1% |
| 3543617 | 2496.1.1.0 ↗ | a/b three-layered sandwiches › SpoIIaa-like › SpoIIaa-like › SpoIIaa-like | 0.66 | 50.0 | 4.32e-01 | 80.0% | 74.0% |
| None | — | 0.65 | 56.0 | 3.70e-01 | 96.0% | 52.0% | |
| 3249620 | 207.1.1.12 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › FNIP | 0.65 | 56.0 | 3.44e-01 | 95.0% | 26.3% |
| 3273225 | 207.1.1.12 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › FNIP | 0.65 | 56.0 | 3.86e-01 | 94.0% | 49.1% |
| 3268248 | 207.1.1.12 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › FNIP | 0.65 | 57.0 | 3.75e-01 | 100.0% | 41.8% |
| 4480888 | 207.1.1.490 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › LRR_4, LRR_8, LRR_13, LRR_14 | 0.64 | 54.0 | 3.40e-01 | 93.0% | 42.0% |
| 3271792 | 207.1.1.12 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › FNIP | 0.64 | 56.0 | 4.47e-01 | 100.0% | 90.0% |
| 3260978 | 207.1.1.12 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › FNIP | 0.64 | 56.0 | 4.09e-01 | 100.0% | 64.5% |
| 3251442 | 207.1.1.12 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › FNIP | 0.63 | 55.0 | 3.71e-01 | 99.0% | 46.6% |
| 3254906 | 207.1.1.12 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › FNIP | 0.63 | 55.0 | 3.43e-01 | 99.0% | 36.7% |
| 4091886 | 2004.1.1.159 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Mur_ligase_M | 0.63 | 51.0 | 4.11e-01 | 90.0% | 66.8% |
| 4623374 | 7570.1.1.0 ↗ | a/b three-layered sandwiches › MurD-like peptide ligases, peptide-binding domain › MurD-like peptide ligases, peptide-binding domain › MurD-like peptide ligases, peptide-binding domain | 0.62 | 51.0 | 4.22e-01 | 88.0% | 60.0% |
| 1281087 | 207.1.1.21 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › LRR_5 | 0.61 | 51.0 | 3.47e-01 | 92.0% | 52.2% |
| 3485073 | 247.1.1.0 ↗ | a+b four layers › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase | 0.60 | 41.0 | 3.19e-01 | 80.0% | 32.6% |
| 3100074 | 2007.1.3.1 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › CheY-like › Response_reg | 0.59 | 43.0 | 4.07e-01 | 94.0% | 62.6% |
| 3497765 | 247.1.1.9 ↗ | a+b four layers › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › DRMBL | 0.59 | 49.0 | 3.95e-01 | 95.0% | 89.3% |
| 3469547 | 7533.1.1.1 ↗ | a/b three-layered sandwiches › Phosphoglycerate kinase domain 2 › Phosphoglycerate kinase domain 2 › Phosphoglycerate kinase domain 2 › PGK | 0.58 | 45.0 | 3.53e-01 | 84.0% | 89.1% |
| 3283093 | 2003.1.11.0 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › Formate/glycerate dehydrogenase catalytic domain-like | 0.55 | 47.0 | 4.43e-01 | 93.0% | 100.0% |
| 169540 | 7501.1.1.1 ↗ | a/b three-layered sandwiches › Dihydrofolate reductases › Dihydrofolate reductases › Dihydrofolate reductases › DHFR_1 | 0.55 | 39.0 | 3.28e-01 | 92.0% | 44.0% |
| 4033814 | 323.1.1.3 ↗ | a+b complex topology › CoA-dependent acyltransferases › CoA-dependent acyltransferases › CoA-dependent acyltransferases › AMP-binding | 0.55 | 42.0 | 3.37e-01 | 86.0% | 43.2% |
| 3969593 | 2007.1.3.1 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › CheY-like › Response_reg | 0.53 | 42.0 | 3.82e-01 | 85.0% | 77.8% |
| 4993932 | 7545.1.1.1 ↗ | a/b three-layered sandwiches › YchN-like › YchN-like › YchN-like › DsrE | 0.53 | 40.0 | 4.08e-01 | 83.0% | 84.0% |
| 4875207 | 323.1.1.3 ↗ | a+b complex topology › CoA-dependent acyltransferases › CoA-dependent acyltransferases › CoA-dependent acyltransferases › AMP-binding | 0.51 | 40.0 | 3.46e-01 | 83.0% | 85.3% |