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hypothetical_protein_MIMI_gp0310

Euk-Vir

Acanthamoeba_polyphaga_mimivirus

hypothetical_protein_MIMI_gp0310__YP_003986784__Acanthamoeba_polyphaga_mimivirus__212035

Identity

Accession:
YP_003986784 ↗
Protein ID:
hypothetical_protein_MIMI_gp0310
Kingdom:
euk

Quality

74.7 mean pLDDT

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D2 medium residues 91-152
PDB
Domain cluster: representative
CATH (56)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2jdiG01 1.10.287.80 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › ATP synthase, gamma subunit, helix hairpin domain 0.87 69.0 7.03e-01 85.5% 85.2%
5jrcA00 1.20.58.2140 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.86 67.0 4.69e-01 87.1% 28.0%
2lw1A00 1.10.287.380 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Valyl-tRNA synthetase, C-terminal domain 0.86 70.0 6.23e-01 87.1% 80.0%
3tklB01 1.20.58.90 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.86 66.0 6.65e-01 88.7% 82.3%
1skvA00 1.10.287.660 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin 0.85 67.0 6.68e-01 88.7% 81.2%
4l0rB00 1.20.58.90 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.85 70.0 6.61e-01 88.7% 87.7%
1w99A01 1.20.190.10 Mainly Alpha › Up-down Bundle › Delta-Endotoxin; domain 1 › Pesticidal crystal protein, N-terminal domain 0.85 70.0 4.97e-01 88.7% 35.3%
1lrzA03 1.20.58.90 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.84 68.0 6.88e-01 88.7% 98.4%
3fxdB00 1.20.58.90 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.84 62.0 6.46e-01 88.7% 84.5%
2xzmO02 1.10.287.10 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › S15/NS1, RNA-binding 0.83 63.0 6.08e-01 91.9% 71.4%
4e6nA02 6.10.140.1010 Special › Helix non-globular › Helix Hairpins › 0.83 64.0 6.34e-01 82.3% 89.4%
2wmmA01 1.20.5.420 Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › Immunoglobulin FC, subunit C 0.83 62.0 6.87e-01 79.0% 100.0%
3fppA03 6.10.140.1990 Special › Helix non-globular › Helix Hairpins › 0.83 67.0 5.98e-01 88.7% 65.9%
3syvA01 1.20.1270.60 Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › Arfaptin homology (AH) domain/BAR domain 0.83 68.0 4.44e-01 88.7% 32.7%
1tjlA00 1.20.120.910 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › DksA, coiled-coil domain 0.83 66.0 4.90e-01 85.5% 50.3%
1zs3A00 1.20.1260.10 Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle 0.82 67.0 4.78e-01 88.7% 33.3%
4h63K00 1.10.287.3490 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.81 66.0 5.59e-01 88.7% 55.1%
1yxrA01 1.20.58.80 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphotransferase system, lactose/cellobiose-type IIA subunit 0.81 63.0 5.90e-01 87.1% 68.9%
3zgxA02 6.10.140.1720 Special › Helix non-globular › Helix Hairpins › 0.81 65.0 5.70e-01 88.7% 59.3%
4abxA02 6.10.140.1090 Special › Helix non-globular › Helix Hairpins › 0.81 66.0 5.88e-01 88.7% 71.3%
1urfA00 1.10.287.160 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › HR1 repeat 0.81 70.0 6.37e-01 95.2% 90.1%
4adzA00 1.20.58.1000 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Metal-sensitive repressor, helix protomer 0.81 68.0 5.98e-01 93.5% 63.3%
4iggA01 1.10.287.160 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › HR1 repeat 0.81 65.0 6.39e-01 88.7% 91.0%
3hr0B01 1.10.287.1060 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › ESAT-6-like 0.80 64.0 5.95e-01 88.7% 87.3%
1vf7A03 1.10.287.470 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin 0.79 63.0 6.37e-01 87.1% 95.0%
2yevC00 6.10.280.110 Special › Helix non-globular › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.78 64.0 6.37e-01 88.7% 92.1%
3rc3A05 1.20.58.1080 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.78 63.0 5.12e-01 88.7% 47.8%
3d36B02 1.10.287.130 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Signal transduction histidine kinase, dimerisation/phosphotransfer (DHp) domain 0.77 61.0 6.19e-01 90.3% 86.9%
3qf7A02 1.10.287.660 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin 0.77 61.0 6.15e-01 88.7% 84.1%
1zhcA00 6.10.280.50 Special › Helix non-globular › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.77 66.0 6.17e-01 98.4% 77.6%
2xubA05 6.10.140.1450 Special › Helix non-globular › Helix Hairpins › 0.76 62.0 5.36e-01 88.7% 78.1%
1rq0A01 6.10.140.160 Special › Helix non-globular › Helix Hairpins › 0.76 65.0 5.93e-01 95.2% 100.0%
4l8jA04 1.10.287.470 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin 0.76 56.0 5.78e-01 79.0% 86.4%
3lnnB03 1.10.287.470 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin 0.76 60.0 5.93e-01 88.7% 86.6%
1wpaA01 6.10.140.340 Special › Helix non-globular › Helix Hairpins › 0.76 63.0 5.34e-01 90.3% 56.6%
2y39A00 1.20.120.1490 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › 0.76 69.0 5.62e-01 100.0% 69.1%
4g80T00 1.20.120.350 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Voltage-gated potassium channels. Chain C 0.76 58.0 4.48e-01 88.7% 37.4%
1hs7A00 1.20.58.70 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.75 61.0 5.27e-01 90.3% 56.7%
1cxzB00 1.10.287.160 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › HR1 repeat 0.75 60.0 5.44e-01 88.7% 67.4%
7t7kA01 1.20.930.60 Mainly Alpha › Up-down Bundle › Transcription Elongation Factor S-II; Chain A › 0.74 58.0 4.74e-01 87.1% 68.6%
2rkhA02 1.20.1280.20 Mainly Alpha › Up-down Bundle › Monooxygenase › HscB, C-terminal domain 0.72 55.0 5.24e-01 85.5% 72.4%
3icxA01 1.10.287.660 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin 0.71 56.0 5.35e-01 88.7% 92.0%
3ce2A01 1.20.140.70 Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › Oligopeptidase f, N-terminal domain 0.71 59.0 4.47e-01 95.2% 42.2%
1wkbA03 1.10.730.10 Mainly Alpha › Orthogonal Bundle › Isoleucyl-tRNA Synthetase; Domain 1 › Isoleucyl-tRNA Synthetase; Domain 1 0.70 57.0 4.69e-01 100.0% 48.8%
1h7cA00 1.20.58.90 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.69 54.0 4.64e-01 88.7% 52.4%
2rp4A00 6.10.280.60 Special › Helix non-globular › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Transcription factor p53, C-terminal domain 0.68 50.0 4.81e-01 83.9% 69.0%
4id0A02 1.20.1050.10 Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › 0.68 57.0 4.77e-01 96.8% 58.9%
4cpgA00 1.20.5.420 Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › Immunoglobulin FC, subunit C 0.65 45.0 4.39e-01 82.3% 65.2%
1d2mA03 6.10.140.240 Special › Helix non-globular › Helix Hairpins › 0.65 46.0 4.61e-01 79.0% 72.7%
2pvqA02 1.20.1050.10 Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › 0.65 53.0 4.55e-01 95.2% 63.2%
6yz2A01 1.20.120.350 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Voltage-gated potassium channels. Chain C 0.64 50.0 4.19e-01 93.5% 47.5%
2db7A01 6.10.250.980 Special › Helix non-globular › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › 0.62 45.0 4.79e-01 79.0% 96.2%
3vm9A02 6.10.140.2110 Special › Helix non-globular › Helix Hairpins › 0.58 48.0 5.06e-01 93.5% 98.2%
1xfiA02 1.20.1700.10 Mainly Alpha › Up-down Bundle › AF1104-like › AF1104-like 0.57 42.0 3.88e-01 85.5% 58.9%
2uv8A07 6.10.140.1410 Special › Helix non-globular › Helix Hairpins › 0.57 51.0 4.54e-01 100.0% 71.8%
2vkzA02 3.40.47.10 Alpha Beta › 3-Layer(aba) Sandwich › Peroxisomal Thiolase; Chain A, domain 1 › Thiolase/Chalcone synthase 0.57 51.0 3.31e-01 100.0% 23.3%
ECOD (42)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3089113 605.1.1.0 alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase 0.88 72.0 6.16e-01 88.7% 58.1%
4646268 192.29.1.0 alpha bundles › Long alpha-hairpin › bMERB domain (bivalent Mical/EHBP Rab binding) › bMERB domain (bivalent Mical/EHBP Rab binding) 0.87 71.0 6.80e-01 88.7% 77.1%
3544521 904.1.1.1 few secondary structure elements › B-box zinc-binding domain-like › B-box zinc-binding domain › B-box zinc-binding domain › zf-B_box 0.86 69.0 5.18e-01 88.7% 37.2%
3191420 192.29.1.0 alpha bundles › Long alpha-hairpin › bMERB domain (bivalent Mical/EHBP Rab binding) › bMERB domain (bivalent Mical/EHBP Rab binding) 0.85 71.0 7.00e-01 90.3% 89.2%
5001217 605.1.1.0 alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase 0.84 69.0 6.43e-01 87.1% 74.7%
4167714 109.4.1.198 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › TPR_12 0.84 70.0 4.44e-01 88.7% 21.1%
3627873 605.1.1.0 alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase 0.84 69.0 6.45e-01 88.7% 73.3%
3377936 3922.1.1.173 alpha bundles › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3 › DUF3493 0.83 68.0 6.08e-01 88.7% 67.1%
3598650 192.2.1.0 alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin 0.82 68.0 5.81e-01 88.7% 80.0%
3631582 604.7.1.0 alpha bundles › Spectrin repeat-like › Tubulin chaperone cofactor A › Tubulin chaperone cofactor A 0.81 65.0 5.52e-01 88.7% 54.0%
3928077 3636.1.1.0 a+b two layers › XPD arch domain › XPD arch domain › XPD arch domain 0.81 65.0 4.90e-01 88.7% 37.2%
3976486 3826.1.1.1 alpha bundles › Copper-sensitive operon repressor (CsoR) › Copper-sensitive operon repressor (CsoR) › Copper-sensitive operon repressor (CsoR) › Trns_repr_metal 0.81 70.0 6.11e-01 95.2% 64.4%
3416429 2004.1.1.442 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › SMC_N, AAA_21 0.81 66.0 3.94e-01 88.7% 15.3%
3971635 2004.1.1.430 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › ABC_tran, ABC_tran_Xtn 0.80 62.0 3.58e-01 90.3% 9.9%
3288637 605.1.1.4 alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase › HisKA_3 0.80 66.0 6.22e-01 90.3% 76.0%
3616328 3826.1.1.41 alpha bundles › Copper-sensitive operon repressor (CsoR) › Copper-sensitive operon repressor (CsoR) › Copper-sensitive operon repressor (CsoR) › TMEM151 0.79 69.0 5.88e-01 96.8% 63.0%
3273435 604.12.1.5 alpha bundles › Spectrin repeat-like › MIT domain › MIT domain › SUV3_C 0.79 63.0 5.79e-01 87.1% 67.5%
5016166 3877.1.1.0 alpha bundles › Membrane protein insertase YidC-related › Membrane protein insertase YidC-related › Membrane protein insertase YidC 0.79 62.0 4.39e-01 88.7% 28.4%
3474564 192.8.1.0 alpha bundles › Long alpha-hairpin › Eukaryotic DNA topoisomerase I, dispensable insert domain › Eukaryotic DNA topoisomerase I, dispensable insert domain 0.78 62.0 5.22e-01 88.7% 51.4%
3969893 605.1.1.1 alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase › HisKA 0.78 62.0 6.11e-01 88.7% 100.0%
3801692 604.12.1.5 alpha bundles › Spectrin repeat-like › MIT domain › MIT domain › SUV3_C 0.77 62.0 5.35e-01 88.7% 56.8%
3602796 3826.1.1.0 alpha bundles › Copper-sensitive operon repressor (CsoR) › Copper-sensitive operon repressor (CsoR) › Copper-sensitive operon repressor (CsoR) 0.77 69.0 5.90e-01 100.0% 66.0%
4295915 3755.3.1.0 alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin 0.77 62.0 4.88e-01 88.7% 90.0%
3947564 605.1.1.4 alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase › HisKA_3 0.76 62.0 6.19e-01 91.9% 93.8%
3515350 192.7.1.0 alpha bundles › Long alpha-hairpin › tRNA-binding arm › tRNA-binding arm 0.76 67.0 5.67e-01 98.4% 87.0%
5047148 2004.1.1.198 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_23 0.75 64.0 4.07e-01 98.4% 27.6%
4806319 3755.1.1.2 alpha bundles › YscO-like › Putative type III secretion protein YscO-related › Putative type III secretion protein YscO-related › YscO-like 0.74 60.0 5.50e-01 90.3% 68.7%
3988454 605.1.1.1 alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase › HisKA 0.74 62.0 6.03e-01 95.2% 88.6%
4883924 605.1.1.1 alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase › HisKA 0.74 59.0 5.47e-01 88.7% 71.2%
3462297 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.74 58.0 5.54e-01 88.7% 92.0%
4967344 5069.1.1.15 alpha bundles › Transmembrane heme-binding four-helical bundle › Transmembrane heme-binding four-helical bundle › Transmembrane di-heme cytochromes › Cytochrom_C_asm 0.74 63.0 4.12e-01 98.4% 27.5%
3178526 109.4.1.0 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.73 58.0 3.95e-01 87.1% 66.8%
3987802 192.7.1.1 alpha bundles › Long alpha-hairpin › tRNA-binding arm › tRNA-binding arm › FemAB 0.73 58.0 5.89e-01 88.7% 90.0%
5056427 3843.1.1.38 alpha complex topology › NADH-quinone oxidoreductase subunit K › NADH-quinone oxidoreductase subunit K › NADH-quinone oxidoreductase subunit K › T4SS_pilin 0.73 52.0 4.29e-01 75.8% 75.5%
4370630 192.7.1.2 alpha bundles › Long alpha-hairpin › tRNA-binding arm › tRNA-binding arm › Seryl_tRNA_N 0.72 61.0 5.49e-01 100.0% 91.1%
4674 192.7.1.1 alpha bundles › Long alpha-hairpin › tRNA-binding arm › tRNA-binding arm › FemAB 0.71 59.0 5.87e-01 95.2% 89.2%
3598036 601.14.1.0 alpha bundles › Four-helical up-and-down bundle › Hemerythrin › Hemerythrin 0.71 62.0 4.73e-01 98.4% 93.8%
3436926 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.70 58.0 5.58e-01 95.2% 82.4%
3869913 2004.1.1.442 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › SMC_N, AAA_21 0.70 55.0 3.34e-01 90.3% 31.7%
3547209 192.15.1.204 alpha bundles › Long alpha-hairpin › Endosomal sorting complex assembly domains › Endosomal sorting complex assembly domains › DUF2678 0.67 56.0 4.93e-01 98.4% 69.0%
3482907 3291.1.1.0 alpha bundles › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related 0.60 45.0 3.89e-01 90.3% 47.8%
3597348 207.1.1.0 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats 0.54 49.0 3.09e-01 98.4% 91.5%