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hypothetical_protein_MIMI_gp0490

Euk-Vir

Acanthamoeba_polyphaga_mimivirus

hypothetical_protein_MIMI_gp0490__YP_003986963__Acanthamoeba_polyphaga_mimivirus__212035

Identity

Accession:
YP_003986963 ↗
Protein ID:
hypothetical_protein_MIMI_gp0490
Kingdom:
euk

Quality

66.0 mean pLDDT

Taxonomy

Bamfordvirae› Nucleocytoviricota› Megaviricetes› Imitervirales› Mimiviridae› Mimivirus› Acanthamoeba_polyphaga_mimivirus

TaxID: 212035

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 30-141
PDB
Domain cluster: representative
CATH (44)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3t4nA01 3.30.310.80 Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › Kinase associated domain 1, KA1 0.79 64.0 6.90e-01 88.4% 100.0%
2qrdA00 3.30.310.80 Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › Kinase associated domain 1, KA1 0.78 65.0 6.51e-01 88.4% 97.4%
1kyfA02 3.30.310.10 Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › TATA-Binding Protein 0.78 59.0 5.89e-01 86.6% 77.9%
3klxB00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.75 63.0 5.34e-01 91.1% 91.7%
5e4bA00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.74 68.0 5.78e-01 99.1% 92.6%
7wa9A01 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.74 63.0 5.80e-01 91.1% 97.9%
2ns9A01 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.73 62.0 5.70e-01 92.9% 96.6%
2il5A00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.73 62.0 5.41e-01 90.2% 90.1%
7szeB02 3.90.380.10 Alpha Beta › Alpha-Beta Complex › Naphthalene 1,2-dioxygenase Alpha Subunit; Chain A, domain 1 › Naphthalene 1,2-dioxygenase Alpha Subunit; Chain A, domain 1 0.73 63.0 5.26e-01 92.0% 78.8%
3cnwA00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.72 61.0 5.70e-01 92.0% 93.6%
6v04A01 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.72 61.0 5.90e-01 91.1% 97.6%
2d4rA00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.70 59.0 5.41e-01 91.1% 94.5%
1z94B00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.69 59.0 5.39e-01 91.1% 95.8%
2fpnA01 3.30.2030.10 Alpha Beta › 2-Layer Sandwich › TBP-like › YwmB-like 0.67 58.0 5.38e-01 98.2% 75.7%
6serA01 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.67 56.0 4.43e-01 91.1% 80.7%
3w9kA00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.66 55.0 5.24e-01 91.1% 90.4%
3fo5B00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.66 56.0 4.40e-01 92.0% 73.0%
3bxoA02 2.20.130.10 Mainly Beta › Single Sheet › S-adenosyl-L-methionine-dependent methyltransferases › CAC2371-like domains 0.66 35.0 4.73e-01 87.5% 98.3%
2pwwA00 3.30.310.100 Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › YugN-like 0.65 54.0 5.38e-01 90.2% 98.3%
6w0pB01 2.70.98.40 Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › Glycoside hydrolase, family 65, N-terminal domain 0.63 55.0 4.04e-01 93.8% 63.3%
4ktpA01 2.70.98.40 Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › Glycoside hydrolase, family 65, N-terminal domain 0.63 54.0 4.15e-01 93.8% 69.6%
1xszA03 3.30.310.140 Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › sec7 domains 0.62 56.0 5.03e-01 100.0% 86.0%
4ewtA02 3.30.70.360 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.62 56.0 5.55e-01 99.1% 94.8%
3io1A02 3.30.70.360 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.61 53.0 5.28e-01 98.2% 91.4%
1gjwA02 2.60.40.1180 Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II 0.61 29.0 3.66e-01 100.0% 75.0%
3pfoA02 3.30.70.360 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.60 53.0 5.09e-01 97.3% 94.5%
5z0uA03 2.60.40.1180 Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II 0.60 36.0 3.96e-01 100.0% 74.4%
7rsfA01 3.30.70.360 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.59 53.0 5.18e-01 99.1% 97.5%
3gb0A02 3.30.70.360 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.59 50.0 5.07e-01 99.1% 93.8%
1k8kD01 3.30.1460.20 Alpha Beta › 2-Layer Sandwich › Yope Regulator; Chain: A, › 0.57 48.0 4.37e-01 91.1% 68.9%
3ci0I00 3.30.1300.30 Alpha Beta › 2-Layer Sandwich › Pantoate--beta-alanine Ligase; Chain: A,domain 2 › GSPII I/J protein-like 0.57 33.0 3.85e-01 87.5% 78.3%
3tx8A02 3.30.70.360 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.56 50.0 4.99e-01 99.1% 96.5%
3gxwC00 3.30.505.10 Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain 0.56 41.0 4.32e-01 76.8% 91.0%
3aj7A03 2.60.40.1180 Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II 0.55 32.0 3.71e-01 75.9% 81.8%
1uokA03 2.60.40.1180 Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II 0.55 31.0 3.53e-01 75.0% 76.9%
4hiaA00 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.55 46.0 4.01e-01 93.8% 93.2%
2eenA00 2.40.320.10 Mainly Beta › Beta Barrel › Hypothetical Protein Pfu-838710-001 › Hypothetical Protein Pfu-838710-001 0.54 47.0 4.05e-01 95.5% 92.7%
4ckbD02 3.20.100.20 Alpha Beta › Alpha-Beta Barrel › mRNA Triphosphatase Cet1; Chain A › 0.53 43.0 3.58e-01 88.4% 89.8%
1m53A03 2.60.40.1180 Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II 0.53 29.0 3.28e-01 91.1% 72.7%
3gd0A02 3.30.920.50 Alpha Beta › 2-Layer Sandwich › Metal Transport, Frataxin; Chain A › Beta-1,3-glucanase, C-terminal domain 0.52 43.0 4.32e-01 88.4% 99.1%
4kc7A02 2.40.128.10 Mainly Beta › Beta Barrel › Lipocalin › 0.52 39.0 4.17e-01 81.2% 100.0%
3ai4A00 2.40.155.10 Mainly Beta › Beta Barrel › Green Fluorescent Protein › Green fluorescent protein 0.52 43.0 3.31e-01 90.2% 79.7%
4jgwA01 1.20.870.10 Mainly Alpha › Up-down Bundle › Son of sevenless (SoS) protein; Chain S, domain 1 › Son of sevenless (SoS) protein Chain: S domain 1 0.51 37.0 3.39e-01 76.8% 71.8%
7jjtA01 2.60.40.1180 Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II 0.51 34.0 3.66e-01 80.4% 84.1%
ECOD (60)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3935896 331.4.1.0 ↗ a+b two layers › TBP-like › Kinase associated domain 1, KA1 › Kinase associated domain 1, KA1 0.81 68.0 6.43e-01 92.9% 76.2%
4997740 331.9.1.0 ↗ a+b two layers › TBP-like › Subdomain of clathrin and coatomer appendage domain › Subdomain of clathrin and coatomer appendage domain 0.79 69.0 6.33e-01 92.0% 78.6%
5073891 331.3.1.0 ↗ a+b two layers › TBP-like › Bet v1-like › Bet v1-like 0.79 66.0 6.96e-01 88.4% 99.0%
3474976 331.9.1.0 ↗ a+b two layers › TBP-like › Subdomain of clathrin and coatomer appendage domain › Subdomain of clathrin and coatomer appendage domain 0.78 63.0 5.96e-01 84.8% 82.3%
73522 331.4.1.1 ↗ a+b two layers › TBP-like › Kinase associated domain 1, KA1 › Kinase associated domain 1, KA1 › KA1 0.78 63.0 6.42e-01 93.8% 88.1%
3227579 331.3.1.6 ↗ a+b two layers › TBP-like › Bet v1-like › Bet v1-like › PRELI 0.77 67.0 5.63e-01 92.9% 96.7%
3930021 206.1.1.1 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase 0.76 65.0 4.33e-01 92.0% 24.9%
5009761 331.3.1.7 ↗ a+b two layers › TBP-like › Bet v1-like › Bet v1-like › COXG 0.76 64.0 5.86e-01 90.2% 98.6%
5041579 331.4.1.0 ↗ a+b two layers › TBP-like › Kinase associated domain 1, KA1 › Kinase associated domain 1, KA1 0.76 64.0 6.63e-01 92.0% 97.1%
3451757 331.3.1.11 ↗ a+b two layers › TBP-like › Bet v1-like › Bet v1-like › Polyketide_cyc2 0.75 63.0 5.37e-01 91.1% 82.8%
3440523 331.3.1.17 ↗ a+b two layers › TBP-like › Bet v1-like › Bet v1-like › VASt 0.75 64.0 5.03e-01 92.0% 74.7%
4209630 331.3.1.20 ↗ a+b two layers › TBP-like › Bet v1-like › Bet v1-like › KshA_C 0.74 63.0 5.08e-01 91.1% 74.8%
5047469 331.10.2.0 ↗ a+b two layers › TBP-like › S-adenosylmethionine decarboxylase-related › Bacterial S-adenosylmethionine decarboxylase 0.74 66.0 6.29e-01 97.3% 92.3%
4025179 331.3.1.0 ↗ a+b two layers › TBP-like › Bet v1-like › Bet v1-like 0.74 63.0 5.11e-01 92.0% 88.3%
6333 331.3.1.7 ↗ a+b two layers › TBP-like › Bet v1-like › Bet v1-like › COXG 0.74 63.0 5.75e-01 92.9% 97.3%
3681942 331.3.1.17 ↗ a+b two layers › TBP-like › Bet v1-like › Bet v1-like › VASt 0.74 63.0 5.03e-01 93.8% 75.1%
3431362 331.3.1.17 ↗ a+b two layers › TBP-like › Bet v1-like › Bet v1-like › VASt 0.73 62.0 5.22e-01 91.1% 88.1%
3961758 331.3.1.7 ↗ a+b two layers › TBP-like › Bet v1-like › Bet v1-like › COXG 0.73 62.0 5.64e-01 92.0% 94.7%
5074323 331.10.2.0 ↗ a+b two layers › TBP-like › S-adenosylmethionine decarboxylase-related › Bacterial S-adenosylmethionine decarboxylase 0.73 62.0 6.20e-01 91.1% 97.4%
3666444 331.3.1.17 ↗ a+b two layers › TBP-like › Bet v1-like › Bet v1-like › VASt 0.73 63.0 5.35e-01 94.6% 91.4%
3280926 881.1.1.6 ↗ a+b three layers › Mog1p/PsbP-like › Mog1p/PsbP-like › Mog1p/PsbP-like › Lpp-LpqN 0.73 50.0 4.30e-01 70.5% 71.3%
4970968 331.10.2.0 ↗ a+b two layers › TBP-like › S-adenosylmethionine decarboxylase-related › Bacterial S-adenosylmethionine decarboxylase 0.73 62.0 6.19e-01 91.1% 91.2%
4964630 331.3.1.11 ↗ a+b two layers › TBP-like › Bet v1-like › Bet v1-like › Polyketide_cyc2 0.72 61.0 5.59e-01 91.1% 93.7%
5040587 331.3.1.11 ↗ a+b two layers › TBP-like › Bet v1-like › Bet v1-like › Polyketide_cyc2 0.71 61.0 5.47e-01 92.0% 90.3%
3254057 331.18.1.4 ↗ a+b two layers › TBP-like › C-terminal TBP-like domain of Roc › C-terminal TBP-like domain of Roc › COR-B 0.71 64.0 5.34e-01 99.1% 89.2%
3959606 881.1.1.0 ↗ a+b three layers › Mog1p/PsbP-like › Mog1p/PsbP-like › Mog1p/PsbP-like 0.70 48.0 4.18e-01 70.5% 72.2%
1491977 881.1.1.6 ↗ a+b three layers › Mog1p/PsbP-like › Mog1p/PsbP-like › Mog1p/PsbP-like › Lpp-LpqN 0.69 47.0 4.06e-01 70.5% 70.1%
5010189 331.3.1.0 ↗ a+b two layers › TBP-like › Bet v1-like › Bet v1-like 0.68 57.0 5.30e-01 90.2% 95.7%
3718433 304.112.1.0 ↗ a+b two layers › Alpha-beta plaits › Argonaute, N-terminal domain › Argonaute, N-terminal domain 0.68 59.0 4.96e-01 96.4% 75.9%
3268196 331.3.1.5 ↗ a+b two layers › TBP-like › Bet v1-like › Bet v1-like › Polyketide_cyc 0.68 57.0 5.22e-01 92.0% 92.7%
3854043 331.3.1.3 ↗ a+b two layers › TBP-like › Bet v1-like › Bet v1-like › START 0.67 57.0 4.56e-01 92.0% 78.6%
4974181 331.3.1.74 ↗ a+b two layers › TBP-like › Bet v1-like › Bet v1-like › PF27226 0.67 49.0 5.14e-01 75.9% 90.9%
3246209 304.112.1.0 ↗ a+b two layers › Alpha-beta plaits › Argonaute, N-terminal domain › Argonaute, N-terminal domain 0.66 58.0 5.00e-01 97.3% 87.8%
3515384 331.3.1.5 ↗ a+b two layers › TBP-like › Bet v1-like › Bet v1-like › Polyketide_cyc 0.66 56.0 5.08e-01 92.0% 90.7%
3420734 331.3.1.3 ↗ a+b two layers › TBP-like › Bet v1-like › Bet v1-like › START 0.66 55.0 4.34e-01 92.0% 90.6%
3552839 11.1.1.795 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › FANCAA 0.65 55.0 5.55e-01 91.1% 99.1%
3265334 216.1.1.0 ↗ a+b two layers › UBC-like › UBC-like › UBC-like 0.65 50.0 5.08e-01 81.2% 87.3%
4028122 881.1.1.0 ↗ a+b three layers › Mog1p/PsbP-like › Mog1p/PsbP-like › Mog1p/PsbP-like 0.64 49.0 4.31e-01 82.1% 95.9%
3565382 304.112.1.1 ↗ a+b two layers › Alpha-beta plaits › Argonaute, N-terminal domain › Argonaute, N-terminal domain › ArgoL1 0.64 56.0 4.80e-01 97.3% 81.1%
3736649 883.1.1.0 ↗ a+b complex topology › Aha1/BPI domain-like › Aha1/BPI domain-like › Aha1/BPI domain-like 0.63 50.0 4.21e-01 84.8% 76.8%
3456369 897.1.1.1 ↗ a+b two layers › Acidic mitochondrial matrix protein p32-like › Acidic mitochondrial matrix protein p32 › Acidic mitochondrial matrix protein p32 › MAM33 0.63 49.0 4.18e-01 83.0% 83.2%
3291496 868.1.1.0 ↗ a+b complex topology › mRNA triphosphatase CET1-related › mRNA triphosphatase CET1-related › mRNA triphosphatase CET1-related 0.63 55.0 4.26e-01 96.4% 93.6%
3896233 331.3.1.72 ↗ a+b two layers › TBP-like › Bet v1-like › Bet v1-like › FANCAA 0.62 52.0 5.30e-01 91.1% 96.4%
4947808 304.25.1.11 ↗ a+b two layers › Alpha-beta plaits › Bacterial exopeptidase dimerisation domain › Bacterial exopeptidase dimerisation domain › Peptidase_M20 0.62 53.0 5.39e-01 98.2% 94.5%
3196755 868.1.1.2 ↗ a+b complex topology › mRNA triphosphatase CET1-related › mRNA triphosphatase CET1-related › mRNA triphosphatase CET1-related › mRNA_triPase 0.62 53.0 3.82e-01 92.0% 83.9%
2123690 881.1.1.9 ↗ a+b three layers › Mog1p/PsbP-like › Mog1p/PsbP-like › Mog1p/PsbP-like › Tli4_C 0.62 44.0 3.95e-01 73.2% 67.1%
3722183 868.1.1.0 ↗ a+b complex topology › mRNA triphosphatase CET1-related › mRNA triphosphatase CET1-related › mRNA triphosphatase CET1-related 0.61 53.0 4.09e-01 96.4% 93.1%
3783089 4099.1.1.0 ↗ a+b two layers › Kinetochore globular domain-like › Kinetochore globular domain-like › Kinetochore globular domain-like 0.61 48.0 4.74e-01 83.9% 90.0%
4288684 304.25.1.1 ↗ a+b two layers › Alpha-beta plaits › Bacterial exopeptidase dimerisation domain › Bacterial exopeptidase dimerisation domain › M20_dimer 0.60 52.0 5.24e-01 98.2% 93.9%
3272235 304.112.1.0 ↗ a+b two layers › Alpha-beta plaits › Argonaute, N-terminal domain › Argonaute, N-terminal domain 0.60 50.0 4.57e-01 93.8% 87.7%
5074973 304.25.1.1 ↗ a+b two layers › Alpha-beta plaits › Bacterial exopeptidase dimerisation domain › Bacterial exopeptidase dimerisation domain › M20_dimer 0.59 53.0 5.25e-01 98.2% 94.8%
4561918 304.25.1.1 ↗ a+b two layers › Alpha-beta plaits › Bacterial exopeptidase dimerisation domain › Bacterial exopeptidase dimerisation domain › M20_dimer 0.59 52.0 5.29e-01 99.1% 99.1%
3594386 331.3.1.0 ↗ a+b two layers › TBP-like › Bet v1-like › Bet v1-like 0.59 44.0 4.74e-01 87.5% 93.7%
3886674 868.1.1.5 ↗ a+b complex topology › mRNA triphosphatase CET1-related › mRNA triphosphatase CET1-related › mRNA triphosphatase CET1-related › Med18 0.59 52.0 4.28e-01 98.2% 87.0%
3474593 216.1.1.0 ↗ a+b two layers › UBC-like › UBC-like › UBC-like 0.59 50.0 4.49e-01 94.6% 99.4%
3978531 223.1.1.58 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains › 2CSK_N 0.57 39.0 3.49e-01 70.5% 66.5%
3970689 223.1.1.0 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains 0.56 39.0 3.75e-01 70.5% 81.6%
5053192 223.2.1.0 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like 0.55 44.0 4.19e-01 86.6% 98.5%
4195296 223.1.1.0 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains 0.51 35.0 3.61e-01 71.4% 86.4%
4130033 2004.1.1.87 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › SMC_N 0.50 41.0 2.79e-01 86.6% 41.8%