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hypothetical_protein_MIMI_gp0543

Euk-Vir

Acanthamoeba_polyphaga_mimivirus

hypothetical_protein_MIMI_gp0543__YP_003987016__Acanthamoeba_polyphaga_mimivirus__212035

Identity

Accession:
YP_003987016 ↗
Protein ID:
hypothetical_protein_MIMI_gp0543
Kingdom:
euk

Quality

51.6 mean pLDDT

Taxonomy

Bamfordvirae› Nucleocytoviricota› Megaviricetes› Imitervirales› Mimiviridae› Mimivirus› Acanthamoeba_polyphaga_mimivirus

TaxID: 212035

Cluster

View cluster (2 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 180-263
PDB
Domain cluster: representative
CATH (18)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3r4iA02 6.10.140.960 Special › Helix non-globular › Helix Hairpins › 0.65 41.0 4.74e-01 75.0% 90.0%
1viuC00 3.90.79.10 Alpha Beta › Alpha-Beta Complex › Nucleoside Triphosphate Pyrophosphohydrolase › Nucleoside Triphosphate Pyrophosphohydrolase 0.64 44.0 3.47e-01 71.4% 73.0%
4toiA02 1.10.287.610 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin 0.62 36.0 4.46e-01 76.2% 100.0%
1dkxA02 1.20.1270.10 Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › 0.59 34.0 3.47e-01 76.2% 58.7%
4hteA03 1.10.167.30 Mainly Alpha › Orthogonal Bundle › Regulator of G-protein Signalling 4; domain 2 › 0.58 37.0 3.79e-01 88.1% 66.3%
1b04A03 1.10.287.610 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin 0.58 38.0 4.30e-01 79.8% 90.3%
1p49A02 1.10.287.550 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin 0.58 35.0 4.08e-01 79.8% 86.4%
1kewA02 3.90.25.10 Alpha Beta › Alpha-Beta Complex › UDP-galactose 4-epimerase; domain 1 › UDP-galactose 4-epimerase, domain 1 0.57 33.0 3.36e-01 75.0% 57.1%
1xb4B01 1.10.10.570 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › """Winged helix"" DNA-binding domain. Chain C. Domain 1" 0.57 39.0 3.61e-01 70.2% 88.5%
3f1iS00 1.20.5.1940 Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › 0.52 33.0 3.45e-01 84.5% 70.1%
6ljaA01 1.50.10.100 Mainly Alpha › Alpha/alpha barrel › Glycosyltransferase › Chondroitin AC/alginate lyase 0.52 43.0 2.87e-01 92.9% 95.8%
1vq8V00 1.10.287.310 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.52 36.0 4.03e-01 90.5% 95.4%
3p9dE01 1.10.560.10 Mainly Alpha › Orthogonal Bundle › GROEL; domain 1 › GroEL-like equatorial domain 0.51 44.0 3.18e-01 98.8% 77.7%
2wnhA00 3.40.50.1240 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Phosphoglycerate mutase-like 0.51 42.0 2.82e-01 96.4% 60.9%
4c5wA01 3.30.2020.30 Alpha Beta › 2-Layer Sandwich › NE0471 N-terminal domain-like › 0.51 34.0 3.30e-01 70.2% 72.2%
1yzfA00 3.40.50.1110 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › SGNH hydrolase 0.50 38.0 2.99e-01 83.3% 70.8%
3vwaA03 1.25.10.10 Mainly Alpha › Alpha Horseshoe › Leucine-rich Repeat Variant › Leucine-rich Repeat Variant 0.50 38.0 2.62e-01 81.0% 41.6%
4h33A00 1.10.287.70 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.50 42.0 4.15e-01 94.0% 91.2%
ECOD (18)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4010438 616.1.1.40 ↗ alpha arrays › S15/NS1 RNA-binding domain › S15/NS1 RNA-binding domain › S15/NS1 RNA-binding domain › DUF1315 0.72 46.0 5.44e-01 94.0% 98.2%
3601477 2004.1.1.455 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › UvrD-helicase, UvrD_C, UvrD_C_2 0.60 50.0 2.96e-01 91.7% 16.0%
3332710 4156.1.1.2 ↗ alpha arrays › Sec63 N-terminal subdomain-like › Sec63 N-terminal subdomain-like › Sec63 N-terminal subdomain-like › HA2_N,HA2_C 0.58 48.0 3.62e-01 94.0% 81.8%
3410548 3615.1.1.0 ↗ alpha bundles › Bacterial dynamin-like protein helical domain › Bacterial dynamin-like protein helical domain › Bacterial dynamin-like protein helical domain 0.58 43.0 3.60e-01 78.6% 77.9%
3669172 376.1.3.0 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger 0.57 43.0 3.95e-01 79.8% 77.3%
4022709 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.57 42.0 3.14e-01 76.2% 49.8%
4014117 2002.1.1.0 ↗ a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels 0.57 47.0 3.22e-01 91.7% 97.4%
3785602 109.4.1.192 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › TPR_8 0.55 41.0 2.95e-01 88.1% 25.3%
4211419 103.2.1.2 ↗ alpha arrays › RuvA-C › ATP cone › ATP cone › ATP-cone 0.55 37.0 3.35e-01 70.2% 75.7%
5064398 101.1.10.3 ↗ alpha arrays › HTH › HTH › Cyclin-like › TFIIB 0.55 38.0 3.58e-01 83.3% 60.0%
3376781 4156.1.1.4 ↗ alpha arrays › Sec63 N-terminal subdomain-like › Sec63 N-terminal subdomain-like › Sec63 N-terminal subdomain-like › HA2_C 0.54 45.0 3.51e-01 98.8% 85.6%
3369706 4156.1.1.2 ↗ alpha arrays › Sec63 N-terminal subdomain-like › Sec63 N-terminal subdomain-like › Sec63 N-terminal subdomain-like › HA2_N,HA2_C 0.54 45.0 3.49e-01 98.8% 59.1%
5051495 601.7.1.0 ↗ alpha bundles › Four-helical up-and-down bundle › HEPN › Nucleotidyltransferase substrate binding subunit/domain 0.54 37.0 3.60e-01 76.2% 63.2%
3600108 109.4.1.509 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › RRP12_HEAT 0.54 40.0 2.27e-01 81.0% 8.9%
4981965 186.1.1.0 ↗ alpha arrays › lambda integrase-N-like › lambda integrase-N › lambda integrase-N 0.53 44.0 4.12e-01 90.5% 77.1%
3205853 719.2.1.1 ↗ beta barrels › XRCC4, N-terminal domain-like › NE0471 N-terminal domain-like › NE0471 N-terminal domain-like › GBBH-like_N 0.51 36.0 3.44e-01 71.4% 75.8%
3784980 719.2.1.1 ↗ beta barrels › XRCC4, N-terminal domain-like › NE0471 N-terminal domain-like › NE0471 N-terminal domain-like › GBBH-like_N 0.50 34.0 3.18e-01 70.2% 65.7%
3683216 2002.1.1.133 ↗ a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Glu_syn_central 0.50 39.0 2.58e-01 86.9% 51.5%
D2 high residues 291-405
PDB