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hypothetical_protein_MIMI_gp0544

Euk-Vir

Acanthamoeba_polyphaga_mimivirus

hypothetical_protein_MIMI_gp0544__YP_003987017__Acanthamoeba_polyphaga_mimivirus__212035

Identity

Accession:
YP_003987017 ↗
Protein ID:
hypothetical_protein_MIMI_gp0544
Kingdom:
euk

Quality

59.4 mean pLDDT

Taxonomy

Bamfordvirae› Nucleocytoviricota› Megaviricetes› Imitervirales› Mimiviridae› Mimivirus› Acanthamoeba_polyphaga_mimivirus

TaxID: 212035

Cluster

View cluster (9 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 20-71_84-149_235-262
PDB
Domain cluster: representative
CATH (13)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4hz9B00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.66 28.0 3.10e-01 97.9% 46.3%
4r80A00 3.10.450.630 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.64 26.0 3.43e-01 94.5% 67.1%
1z5hA03 2.60.40.1910 Mainly Beta › Sandwich › Immunoglobulin-like › 0.59 27.0 3.54e-01 85.6% 79.5%
6obtA00 3.10.129.110 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Polyketide synthase dehydratase 0.58 40.0 3.24e-01 91.8% 37.7%
3k7cA00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.57 26.0 2.94e-01 97.3% 53.7%
7mjrA04 2.60.40.1790 Mainly Beta › Sandwich › Immunoglobulin-like › Fungal immunomodulatory protein Fve 0.57 29.0 3.59e-01 90.4% 77.2%
4u13A00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.57 25.0 2.83e-01 95.2% 50.5%
3bpnC03 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.55 30.0 3.50e-01 89.0% 74.3%
4da5A01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.55 26.0 3.26e-01 95.9% 74.7%
3b5hA01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.54 27.0 3.38e-01 91.1% 79.3%
2yn5A01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.54 26.0 3.39e-01 91.8% 81.0%
3a35A02 2.40.30.20 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › 0.52 26.0 3.19e-01 90.4% 73.9%
2dixA01 3.30.160.20 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.51 22.0 2.88e-01 96.6% 71.8%
ECOD (15)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3927244 708.1.1.0 ↗ beta complex topology › ETN0001 domain-like › ETN0001 domain-like › NAC/WRKY/GCM/WOPR domain 0.75 27.0 3.77e-01 92.5% 64.0%
3930954 708.1.1.0 ↗ beta complex topology › ETN0001 domain-like › ETN0001 domain-like › NAC/WRKY/GCM/WOPR domain 0.75 30.0 3.88e-01 93.2% 63.5%
3927242 708.1.1.0 ↗ beta complex topology › ETN0001 domain-like › ETN0001 domain-like › NAC/WRKY/GCM/WOPR domain 0.73 27.0 3.61e-01 93.2% 61.3%
5082784 243.3.1.0 ↗ a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin 0.70 29.0 3.66e-01 95.9% 62.2%
5074243 243.3.1.0 ↗ a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin 0.67 28.0 3.44e-01 93.8% 58.9%
1678534 243.3.1.10 ↗ a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin › YPEB_PepSY1-2 0.66 27.0 3.42e-01 93.8% 61.6%
3908608 6070.1.1.2 ↗ few secondary structure elements › Sortilin C-terminal domain › Sortilin C-terminal domain › Sortilin C-terminal domain › ELAPOR1_C 0.57 21.0 3.28e-01 82.9% 90.0%
1949057 243.1.1.18 ↗ a+b two layers › Cystatin-like › NTF2-like › NTF2-like › SnoaL_2 0.56 25.0 2.76e-01 95.9% 47.5%
3436093 330.1.1.0 ↗ a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like 0.54 24.0 3.28e-01 94.5% 81.3%
3749345 330.1.1.0 ↗ a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like 0.52 22.0 2.83e-01 97.3% 65.0%
3348558 11.1.1.1090 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Peptidase_M1 0.52 27.0 2.92e-01 91.1% 54.6%
5034617 304.55.2.1 ↗ a+b two layers › Alpha-beta plaits › Origin of replication-binding domains › Transposase IS200-like › Y1_Tnp 0.51 28.0 3.42e-01 80.8% 83.3%
3578603 319.1.1.0 ↗ beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones 0.51 21.0 2.74e-01 87.0% 65.0%
3214337 6070.1.1.0 ↗ few secondary structure elements › Sortilin C-terminal domain › Sortilin C-terminal domain › Sortilin C-terminal domain 0.51 20.0 3.06e-01 84.2% 98.0%
5015217 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.50 29.0 3.35e-01 89.7% 75.5%
D2 medium residues 72-83_185-234_263-275
PDB
Domain cluster: representative
CATH (7)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
5ip4E00 3.10.20.230 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Doublecortin domain 0.59 41.0 3.97e-01 72.0% 97.6%
2z8lA01 3.10.20.120 Alpha Beta › Roll › Ubiquitin-like (UB roll) › 0.55 44.0 3.85e-01 90.7% 100.0%
1d4bA00 3.10.20.10 Alpha Beta › Roll › Ubiquitin-like (UB roll) › 0.54 37.0 3.23e-01 72.0% 63.1%
4oxwA00 3.30.1520.10 Alpha Beta › 2-Layer Sandwich › PX Domain › Phox-like domain 0.52 38.0 3.46e-01 80.0% 86.8%
3teeA02 2.30.30.760 Mainly Beta › Roll › SH3 type barrels. › 0.51 38.0 3.90e-01 81.3% 87.7%
3fkaB00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.50 39.0 3.43e-01 86.7% 84.2%
4ckbD03 2.40.50.830 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.50 37.0 3.14e-01 80.0% 78.4%
ECOD (11)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3338279 221.1.1.0 ↗ a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like 0.62 43.0 3.17e-01 72.0% 55.0%
3937346 221.17.1.0 ↗ a+b two layers › beta-Grasp › C-terminal wheel domain of Cns1 › C-terminal wheel domain of Cns1 0.56 41.0 3.23e-01 80.0% 78.9%
5078763 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.56 41.0 3.71e-01 81.3% 67.3%
5030516 2.1.1.15 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › tRNA_anti-codon 0.55 41.0 3.73e-01 81.3% 71.4%
6181 221.1.1.10 ↗ a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › CIDE-N 0.54 37.0 3.23e-01 72.0% 63.1%
5066015 2.1.1.111 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Ssb-like_OB 0.53 39.0 3.57e-01 80.0% 70.5%
5037301 2.1.1.111 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Ssb-like_OB 0.53 40.0 3.73e-01 81.3% 75.5%
4937726 2.1.1.111 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Ssb-like_OB 0.52 40.0 3.70e-01 82.7% 73.7%
3782164 328.3.1.2 ↗ a+b two layers › IF3-like › Translation initiation factor IF3, C-terminal domain › Translation initiation factor IF3, C-terminal domain › mIF3 0.52 38.0 3.77e-01 92.0% 73.5%
3283053 383.2.1.0 ↗ few secondary structure elements › Defensin-like 0.52 43.0 3.80e-01 90.7% 86.9%
4954224 4.1.1.182 ↗ beta barrels › SH3 › SH3 › SH3 › DUF2097 0.51 38.0 3.62e-01 82.7% 90.5%