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hypothetical_protein_MIMI_gp0663

Euk-Vir

Acanthamoeba_polyphaga_mimivirus

hypothetical_protein_MIMI_gp0663__YP_003987134__Acanthamoeba_polyphaga_mimivirus__212035

Identity

Accession:
YP_003987134 ↗
Protein ID:
hypothetical_protein_MIMI_gp0663
Kingdom:
euk

Quality

91.0 mean pLDDT

Taxonomy

Bamfordvirae› Nucleocytoviricota› Megaviricetes› Imitervirales› Mimiviridae› Mimivirus› Acanthamoeba_polyphaga_mimivirus

TaxID: 212035

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 6-22_111-169
PDB
Domain cluster: rep: OP795442.1__UZZ64144.1__A71_66__00236__D7-80
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF08719.18 best NADAR 70.9 2.10e-19 85.5% 34.4%
CATH (19)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
8bauA01 1.10.357.40 Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › YbiA-like 0.87 81.0 5.91e-01 98.7% 96.7%
2b3wA00 1.10.357.40 Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › YbiA-like 0.72 67.0 5.03e-01 100.0% 84.5%
2gt1A01 3.40.50.2000 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Glycogen Phosphorylase B; 0.57 41.0 3.27e-01 75.0% 92.6%
1jmvA00 3.40.50.620 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HUPs 0.56 38.0 3.19e-01 72.4% 70.7%
2b30A01 3.40.50.1000 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HAD superfamily/HAD-like 0.55 38.0 3.07e-01 75.0% 93.1%
3l49A01 3.40.50.2300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator 0.54 39.0 3.39e-01 78.9% 96.1%
2iw1A01 3.40.50.2000 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Glycogen Phosphorylase B; 0.54 38.0 2.94e-01 75.0% 97.8%
3ktoA00 3.40.50.2300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator 0.54 37.0 3.28e-01 73.7% 98.4%
3a32A02 3.40.50.800 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Anticodon-binding domain 0.53 37.0 3.18e-01 75.0% 74.5%
2p9jB00 3.40.50.1000 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HAD superfamily/HAD-like 0.52 38.0 3.04e-01 77.6% 98.8%
3gybA01 3.40.50.2300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator 0.52 38.0 3.35e-01 78.9% 94.3%
4ywhA01 3.40.50.2300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator 0.52 38.0 3.26e-01 82.9% 90.3%
3loqA02 3.40.50.620 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HUPs 0.52 36.0 3.11e-01 73.7% 59.7%
2xsaA01 3.20.20.80 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycosidases 0.52 41.0 2.84e-01 100.0% 23.8%
2yhaA01 3.40.50.2300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator 0.52 36.0 3.09e-01 75.0% 81.3%
2ei9A00 3.60.10.10 Alpha Beta › 4-Layer Sandwich › Deoxyribonuclease I; Chain A › Endonuclease/exonuclease/phosphatase 0.52 36.0 2.68e-01 73.7% 86.0%
1pswA01 3.40.50.2000 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Glycogen Phosphorylase B; 0.51 37.0 3.10e-01 77.6% 95.1%
1qrsA05 3.40.50.620 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HUPs 0.51 35.0 3.08e-01 72.4% 69.9%
3zidB00 3.40.50.1440 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Tubulin/FtsZ, GTPase domain 0.50 41.0 2.77e-01 94.7% 51.8%
ECOD (22)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3180309 4308.1.1.1 ↗ a+b complex topology › YbiA-like › YbiA-like › YbiA-like › NADAR 0.90 86.0 6.04e-01 100.0% 88.5%
3972372 4308.1.1.0 ↗ a+b complex topology › YbiA-like › YbiA-like › YbiA-like 0.89 85.0 6.20e-01 100.0% 90.5%
3789927 4308.1.1.1 ↗ a+b complex topology › YbiA-like › YbiA-like › YbiA-like › NADAR 0.86 82.0 5.97e-01 100.0% 90.0%
3212620 4308.1.1.1 ↗ a+b complex topology › YbiA-like › YbiA-like › YbiA-like › NADAR 0.85 82.0 5.79e-01 100.0% 93.3%
3230342 4308.1.1.1 ↗ a+b complex topology › YbiA-like › YbiA-like › YbiA-like › NADAR 0.85 82.0 5.67e-01 100.0% 80.5%
3230388 4308.1.1.1 ↗ a+b complex topology › YbiA-like › YbiA-like › YbiA-like › NADAR 0.85 81.0 5.77e-01 100.0% 83.6%
3514155 4308.1.1.0 ↗ a+b complex topology › YbiA-like › YbiA-like › YbiA-like 0.85 80.0 5.91e-01 100.0% 97.7%
3518372 4308.1.1.0 ↗ a+b complex topology › YbiA-like › YbiA-like › YbiA-like 0.84 80.0 5.76e-01 100.0% 99.5%
3999784 4308.1.1.0 ↗ a+b complex topology › YbiA-like › YbiA-like › YbiA-like 0.82 77.0 5.57e-01 100.0% 95.8%
4018277 4308.1.1.1 ↗ a+b complex topology › YbiA-like › YbiA-like › YbiA-like › NADAR 0.80 75.0 5.52e-01 100.0% 98.3%
3998019 4308.1.1.1 ↗ a+b complex topology › YbiA-like › YbiA-like › YbiA-like › NADAR 0.79 74.0 5.43e-01 100.0% 85.0%
3705063 4308.1.1.1 ↗ a+b complex topology › YbiA-like › YbiA-like › YbiA-like › NADAR 0.77 73.0 5.69e-01 98.7% 99.3%
3514172 4308.1.1.1 ↗ a+b complex topology › YbiA-like › YbiA-like › YbiA-like › NADAR 0.77 72.0 5.42e-01 98.7% 93.3%
3999501 4308.1.1.1 ↗ a+b complex topology › YbiA-like › YbiA-like › YbiA-like › NADAR 0.77 73.0 5.44e-01 98.7% 96.9%
3432841 4308.1.1.1 ↗ a+b complex topology › YbiA-like › YbiA-like › YbiA-like › NADAR 0.77 73.0 5.52e-01 100.0% 98.1%
3600506 4308.1.1.0 ↗ a+b complex topology › YbiA-like › YbiA-like › YbiA-like 0.76 73.0 5.61e-01 100.0% 96.7%
3620605 4308.1.1.1 ↗ a+b complex topology › YbiA-like › YbiA-like › YbiA-like › NADAR 0.75 72.0 5.28e-01 100.0% 92.5%
4968265 2007.1.3.1 ↗ a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › CheY-like › Response_reg 0.59 43.0 3.16e-01 78.9% 91.6%
4543836 7512.1.1.10 ↗ a/b three-layered sandwiches › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › Glyco_transf_28 0.56 40.0 3.15e-01 75.0% 95.8%
3895610 2004.1.1.0 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.55 39.0 2.89e-01 75.0% 88.6%
5047283 2007.1.4.3 ↗ a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Phosphofructokinase N-terminal domain › NAD_kinase 0.51 35.0 3.15e-01 72.4% 91.8%
3722838 2003.1.1.3 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains › adh_short 0.51 43.0 3.23e-01 100.0% 67.6%
D2 high residues 27-109
PDB
Domain cluster: rep: hypothetical_protein_H012_gp278__YP_007354612__Acanthamoeba_polyphaga_moumouvirus__1269028__D27-104
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF08719.18 best NADAR 70.9 2.10e-19 98.8% 44.2%