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hypothetical_protein_MIMI_gp0684

Euk-Vir

Acanthamoeba_polyphaga_mimivirus

hypothetical_protein_MIMI_gp0684__YP_003987155__Acanthamoeba_polyphaga_mimivirus__212035

Identity

Accession:
YP_003987155 ↗
Protein ID:
hypothetical_protein_MIMI_gp0684
Kingdom:
euk

Quality

83.5 mean pLDDT

Taxonomy

Bamfordvirae› Nucleocytoviricota› Megaviricetes› Imitervirales› Mimiviridae› Mimivirus› Acanthamoeba_polyphaga_mimivirus

TaxID: 212035

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 10-60
PDB
Domain cluster: representative
CATH (38)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1uebA02 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.68 40.0 3.73e-01 78.4% 46.0%
2qqrA02 3.10.330.70 Alpha Beta › Roll › Vcp-like ATPase; Chain A, domain 2 › 0.68 51.0 5.10e-01 82.4% 100.0%
4bwxA03 1.10.287.3700 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.64 47.0 4.09e-01 80.4% 71.2%
4m4zA01 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.62 46.0 4.76e-01 78.4% 95.7%
5i4eA01 2.30.30.360 Mainly Beta › Roll › SH3 type barrels. › Myosin S1 fragment, N-terminal 0.61 45.0 4.69e-01 78.4% 89.1%
7w6yA02 2.30.42.10 Mainly Beta › Roll › Pdz3 Domain › PDZ domain 0.61 46.0 4.02e-01 84.3% 66.7%
3rauA00 1.25.40.280 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › alix/aip1 like domains 0.59 41.0 2.54e-01 76.5% 27.7%
3kxtA00 2.30.30.610 Mainly Beta › Roll › SH3 type barrels. › Chromatin protein Cren7 0.59 46.0 4.50e-01 84.3% 91.1%
2cudA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.58 46.0 3.90e-01 84.3% 65.8%
4fw1A02 2.30.30.10 Mainly Beta › Roll › SH3 type barrels. › Integrase, C-terminal domain superfamily, retroviral 0.58 42.0 4.17e-01 78.4% 77.8%
2v1qA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.57 45.0 4.27e-01 84.3% 90.0%
4iupA02 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.57 50.0 4.43e-01 96.1% 87.5%
7cfdA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.57 48.0 4.27e-01 94.1% 68.5%
1wq8A00 2.10.90.10 Mainly Beta › Ribbon › Cystine Knot Cytokines, subunit B › Cystine-knot cytokines 0.57 44.0 3.65e-01 88.2% 60.6%
4c0dB00 2.30.30.1020 Mainly Beta › Roll › SH3 type barrels. › CCR4-NOT complex subunit 2/3/5, C-terminal domain 0.56 42.0 2.87e-01 82.4% 23.0%
4xr7F02 1.10.287.3700 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.56 41.0 3.49e-01 80.4% 63.3%
2diqA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.56 46.0 3.68e-01 90.2% 50.0%
4wi1A02 3.40.50.800 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Anticodon-binding domain 0.56 45.0 3.42e-01 90.2% 56.1%
2eqkA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.56 46.0 4.11e-01 92.2% 71.2%
1khiA01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.55 46.0 4.04e-01 92.2% 85.3%
4tm3A00 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.55 47.0 2.80e-01 98.0% 68.8%
1g5hB02 3.40.50.800 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Anticodon-binding domain 0.55 47.0 3.71e-01 96.1% 69.2%
5xilA02 3.40.50.800 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Anticodon-binding domain 0.55 45.0 3.40e-01 94.1% 55.5%
1httA02 3.40.50.800 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Anticodon-binding domain 0.55 42.0 3.50e-01 88.2% 70.4%
1y0nA00 1.10.10.610 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › YehU-like 0.55 40.0 3.56e-01 76.5% 88.7%
1tgjA00 2.10.90.10 Mainly Beta › Ribbon › Cystine Knot Cytokines, subunit B › Cystine-knot cytokines 0.54 43.0 3.51e-01 96.1% 75.0%
1iz6A01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.54 45.0 4.05e-01 92.2% 85.5%
1x6gA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.54 46.0 3.97e-01 96.1% 76.5%
1nj1A02 3.40.50.800 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Anticodon-binding domain 0.54 45.0 3.63e-01 96.1% 68.3%
7u32F02 2.30.30.10 Mainly Beta › Roll › SH3 type barrels. › Integrase, C-terminal domain superfamily, retroviral 0.54 42.0 4.20e-01 86.3% 92.2%
3nqpA00 1.25.40.390 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › 0.53 38.0 2.30e-01 86.3% 58.0%
3cpfA01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.53 43.0 4.02e-01 92.2% 86.2%
3iwaA01 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.52 41.0 2.94e-01 88.2% 42.7%
3q6aB00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.52 41.0 3.26e-01 100.0% 49.3%
1lgpA00 2.60.200.20 Mainly Beta › Sandwich › Tumour Suppressor Smad4 › 0.52 35.0 2.75e-01 70.6% 38.9%
7wa9A01 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.51 40.0 3.15e-01 100.0% 46.1%
1td6A02 3.30.1790.10 Alpha Beta › 2-Layer Sandwich › hypothetical protein mp506/mpn330, domain 2 › hypothetical protein mp506/mpn330, domain 2 0.51 45.0 3.72e-01 100.0% 75.0%
3dghA02 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.51 42.0 3.30e-01 98.0% 83.7%
ECOD (36)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3598807 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.90 72.0 6.44e-01 86.3% 73.9%
3592370 150.5.1.0 ↗ alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › ESAT-6 like › ESAT-6 like 0.87 77.0 5.71e-01 96.1% 44.2%
3605531 375.1.1.77 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › DUF4379 0.87 73.0 6.11e-01 92.2% 65.5%
3609256 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.67 56.0 4.71e-01 92.2% 74.1%
3620947 4.8.1.0 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like 0.67 46.0 4.50e-01 78.4% 67.3%
3518287 4.1.1.347 ↗ beta barrels › SH3 › SH3 › SH3 › KOW7_SPT5, KOW6_SPT5 0.65 53.0 4.02e-01 88.2% 51.3%
4104975 2002.1.1.73 ↗ a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › TGT 0.63 42.0 2.52e-01 86.3% 9.7%
3842631 4.1.1.243 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_Myosin-XVIIIa 0.60 46.0 4.08e-01 80.4% 68.6%
3514631 1016.1.1.1 ↗ alpha arrays › Dimerization domain in caprin-1 and PAN3 › Dimerization domain in caprin-1 and PAN3 › Dimerization domain in caprin-1 and PAN3 › Pan3_PK 0.60 51.0 3.94e-01 100.0% 77.4%
3739884 1016.1.1.1 ↗ alpha arrays › Dimerization domain in caprin-1 and PAN3 › Dimerization domain in caprin-1 and PAN3 › Dimerization domain in caprin-1 and PAN3 › Pan3_PK 0.59 49.0 3.82e-01 100.0% 70.5%
3170397 4.1.1.1 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_1 0.59 45.0 3.86e-01 82.4% 67.5%
5025079 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.58 46.0 4.52e-01 88.2% 80.0%
3627688 4.1.1.319 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_Hsr9 0.58 52.0 3.71e-01 100.0% 45.3%
3267329 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.58 47.0 3.49e-01 88.2% 44.0%
3730229 4.1.1.102 ↗ beta barrels › SH3 › SH3 › SH3 › Tudor_3 0.58 48.0 4.23e-01 92.2% 73.3%
3914746 4.1.1.128 ↗ beta barrels › SH3 › SH3 › SH3 › Tudor_4 0.57 47.0 4.20e-01 90.2% 67.1%
5049592 2005.1.1.17 ↗ a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › tRNA-synt_1f 0.57 46.0 2.83e-01 90.2% 31.5%
3859003 376.1.1.1 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-C3HC4 0.56 42.0 3.53e-01 82.4% 46.7%
3566431 389.1.2.1 ↗ few secondary structure elements › EGF-like › EGF-related › Complement control module/SCR domain › Sushi 0.56 45.0 4.38e-01 98.0% 81.7%
5072682 101.8.1.4 ↗ alpha arrays › HTH › An anticodon-binding domain of class I aminoacyl-tRNA synthetases › An anticodon-binding domain of class I aminoacyl-tRNA synthetases › tRNA-synt_1f 0.56 46.0 2.66e-01 96.1% 13.8%
4122811 2005.1.1.17 ↗ a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › tRNA-synt_1f 0.56 44.0 2.77e-01 92.2% 33.8%
4011604 4.1.1.13 ↗ beta barrels › SH3 › SH3 › SH3 › MS_channel_2nd 0.56 45.0 4.01e-01 90.2% 66.7%
3679619 206.1.1.0 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase 0.55 43.0 3.21e-01 86.3% 44.8%
3681285 7504.1.1.1 ↗ a/b three-layered sandwiches › ITPase-like › ITPase-like › ITPase-like › Ham1p_like 0.55 45.0 3.06e-01 94.1% 26.5%
4203984 101.8.1.1 ↗ alpha arrays › HTH › An anticodon-binding domain of class I aminoacyl-tRNA synthetases › An anticodon-binding domain of class I aminoacyl-tRNA synthetases › tRNA-synt_1f,Anticodon_2 0.55 44.0 2.53e-01 92.2% 14.2%
5014374 2005.1.1.17 ↗ a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › tRNA-synt_1f 0.55 44.0 2.53e-01 92.2% 14.2%
4952887 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.54 44.0 4.38e-01 90.2% 83.6%
5045148 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.54 38.0 3.35e-01 76.5% 83.7%
5033076 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.53 39.0 3.81e-01 78.4% 87.3%
4441539 2003.1.2.5 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › FMO-like 0.53 41.0 2.38e-01 88.2% 25.4%
3937157 4.8.1.2 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like › Chromo_shadow 0.52 37.0 3.39e-01 76.5% 55.7%
4983847 2004.1.1.73 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › MMR_HSR1 0.51 39.0 2.54e-01 92.2% 21.7%
5017134 208.1.1.1 ↗ beta duplicates or obligate multimers › Single-stranded left-handed beta-helix › Trimeric LpxA-like enzymes › Trimeric LpxA-like enzymes › Hexapep 0.51 37.0 2.51e-01 80.4% 20.0%
3783436 3270.1.1.1 ↗ a+b two layers › a+b domain in heme oxygenase › a+b domain in heme oxygenase › a+b domain in heme oxygenase › DUF2470 0.50 39.0 3.14e-01 86.3% 54.3%
3303185 5.3.1.2 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-Prism II › beta-Prism II › B_lectin 0.50 34.0 2.50e-01 72.5% 23.9%
3226810 219.1.1.111 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Transglut_core, Rad4 0.50 41.0 2.66e-01 100.0% 55.0%