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hypothetical_protein_MIMI_gp0737

Euk-Vir

Acanthamoeba_polyphaga_mimivirus

hypothetical_protein_MIMI_gp0737__YP_003987208__Acanthamoeba_polyphaga_mimivirus__212035

Identity

Accession:
YP_003987208 ↗
Protein ID:
hypothetical_protein_MIMI_gp0737
Kingdom:
euk

Quality

77.7 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 1-105
PDB
Domain cluster: representative
CATH (19)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
8hk0C01 1.20.140.10 Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › Butyryl-CoA Dehydrogenase, subunit A, domain 3 0.71 60.0 5.30e-01 91.4% 81.3%
2oexA01 1.20.120.560 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › alix/aip1 in complex with the ypdl late domain 0.69 49.0 4.43e-01 73.3% 81.8%
1tqgA00 1.20.120.160 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › HPT domain 0.67 49.0 4.98e-01 76.2% 76.2%
1qgtB00 1.10.4090.10 Mainly Alpha › Orthogonal Bundle › Hepatitis B viral capsid (hbcag) fold › Viral capsid, core domain supefamily, Hepatitis B virus 0.64 49.0 4.43e-01 81.0% 68.5%
2rp4A00 6.10.280.60 Special › Helix non-globular › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Transcription factor p53, C-terminal domain 0.63 38.0 4.57e-01 87.6% 88.7%
2idgA00 1.10.3480.10 Mainly Alpha › Orthogonal Bundle › TorD-like › TorD-like 0.61 47.0 4.19e-01 83.8% 100.0%
1orjD00 1.20.120.340 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Flagellar protein FliS 0.61 48.0 4.52e-01 84.8% 79.2%
1wn0A00 1.20.120.160 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › HPT domain 0.60 46.0 4.38e-01 83.8% 77.9%
3eslA01 1.20.58.2070 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.60 38.0 4.43e-01 72.4% 90.7%
1u89A00 1.20.120.230 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Alpha-catenin/vinculin-like 0.59 52.0 4.76e-01 97.1% 78.4%
1bgfA00 1.10.532.10 Mainly Alpha › Orthogonal Bundle › Transcription Factor, Stat-4 › STAT transcription factor, N-terminal domain 0.59 43.0 4.13e-01 100.0% 65.3%
3c7jA02 1.20.120.530 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › GntR ligand-binding domain-like 0.59 42.0 3.79e-01 74.3% 88.4%
4dmvA01 1.20.58.1190 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.58 44.0 4.72e-01 93.3% 100.0%
2rldA00 1.20.1440.60 Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › 23S rRNA-intervening sequence 0.58 51.0 4.98e-01 99.0% 98.2%
2d9dA00 1.20.58.120 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › BAG domain 0.58 40.0 4.31e-01 71.4% 91.0%
3n71A03 1.25.40.10 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain 0.57 43.0 3.44e-01 80.0% 71.8%
2rkkA01 1.25.40.270 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Vacuolar protein sorting-associated protein vta1 0.57 41.0 3.59e-01 75.2% 51.9%
3k7xA00 1.50.10.20 Mainly Alpha › Alpha/alpha barrel › Glycosyltransferase › 0.54 38.0 2.71e-01 73.3% 27.1%
1kn1B00 1.10.490.20 Mainly Alpha › Orthogonal Bundle › Globin-like › Phycocyanins 0.54 41.0 3.59e-01 80.0% 68.9%
ECOD (19)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3621985 5001.1.1.5 alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7tm_3 0.74 52.0 3.82e-01 72.4% 41.5%
3957713 633.6.1.1 alpha bundles › Bromodomain-like › Acyl-CoA dehydrogenase C-terminal domain-like › Acyl-CoA dehydrogenase C-terminal domain-like › Acyl-CoA_dh_1 0.74 61.0 5.49e-01 89.5% 84.8%
3839049 616.1.1.1 alpha arrays › S15/NS1 RNA-binding domain › S15/NS1 RNA-binding domain › S15/NS1 RNA-binding domain › Ribosomal_S15 0.68 45.0 4.85e-01 84.8% 77.8%
None 0.65 48.0 4.31e-01 77.1% 65.7%
5000174 601.16.1.0 alpha bundles › Four-helical up-and-down bundle › FAT domain of focal adhesion kinase › FAT domain of focal adhesion kinase 0.64 46.0 4.76e-01 76.2% 81.0%
3780750 109.4.1.401 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › NRDE-2 0.64 44.0 4.08e-01 70.5% 71.9%
3937526 7015.1.1.0 alpha bundles › Palmitoyltransferase DHHC transmembrane domain › Palmitoyltransferase DHHC transmembrane domain › Palmitoyltransferase DHHC transmembrane domain 0.64 53.0 4.83e-01 89.5% 85.0%
3603360 604.1.1.0 alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat 0.63 45.0 4.40e-01 74.3% 86.1%
3539434 633.21.1.40 alpha bundles › Bromodomain-like › Uncharacterized protein PA2107 › Uncharacterized protein PA2107 › AGMP_C 0.61 51.0 4.42e-01 92.4% 58.8%
3852832 3922.1.1.72 alpha bundles › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3 › FAM186A-B_C 0.61 51.0 4.56e-01 91.4% 96.7%
3273757 192.29.1.0 alpha bundles › Long alpha-hairpin › bMERB domain (bivalent Mical/EHBP Rab binding) › bMERB domain (bivalent Mical/EHBP Rab binding) 0.60 49.0 4.84e-01 90.5% 86.0%
3930703 632.22.1.0 alpha bundles › immunoglobulin/albumin-binding domain-like › Cell division protein EzrA repeats › Cell division protein EzrA repeats 0.59 50.0 5.09e-01 93.3% 99.0%
3427540 604.9.1.0 alpha bundles › Spectrin repeat-like › Ribosomal protein S20 › Ribosomal protein S20 0.58 40.0 4.54e-01 72.4% 93.8%
3244235 604.12.1.0 alpha bundles › Spectrin repeat-like › MIT domain › MIT domain 0.57 47.0 4.88e-01 88.6% 99.0%
4157008 3755.3.1.142 alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin › FAM186A-B_C 0.57 45.0 4.05e-01 84.8% 100.0%
3587218 633.23.1.0 alpha bundles › Bromodomain-like › Claudin › Claudin 0.57 47.0 4.43e-01 93.3% 98.5%
3614644 604.12.1.0 alpha bundles › Spectrin repeat-like › MIT domain › MIT domain 0.55 45.0 4.47e-01 88.6% 87.3%
4956279 633.13.1.1 alpha bundles › Bromodomain-like › DsbB-like › DsbB-like › DsbB 0.55 47.0 4.35e-01 99.0% 92.9%
4025852 101.1.10.0 alpha arrays › HTH › HTH › Cyclin-like 0.51 41.0 3.96e-01 90.5% 92.8%
D2 medium residues 106-222
PDB
Domain cluster: representative
CATH (29)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3sqnA03 1.10.1790.30 Mainly Alpha › Orthogonal Bundle › PTS-regulatory domain, PRD › 0.71 30.0 3.01e-01 77.8% 38.1%
2o7tA00 1.10.357.10 Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 0.70 34.0 2.88e-01 95.7% 29.2%
3axjB02 1.20.58.200 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Translin; domain 2 0.69 27.0 3.21e-01 76.1% 48.2%
1wp1B01 1.20.1600.10 Mainly Alpha › Up-down Bundle › Outer membrane efflux proteins (OEP) › Outer membrane efflux proteins (OEP) 0.67 54.0 3.83e-01 88.0% 90.1%
2x2vA00 1.20.20.10 Mainly Alpha › Up-down Bundle › F1FO ATP Synthase › F1F0 ATP synthase subunit C 0.65 35.0 4.34e-01 90.6% 86.8%
1ichA00 1.10.533.10 Mainly Alpha › Orthogonal Bundle › Death Domain, Fas › Death Domain, Fas 0.64 30.0 3.47e-01 86.3% 58.6%
4i0xG00 1.10.287.1060 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › ESAT-6-like 0.63 32.0 4.04e-01 93.2% 82.4%
6vudA01 1.10.132.20 Mainly Alpha › Orthogonal Bundle › Topoisomerase I; Chain A, domain 4 › Ribosome-recycling factor 0.62 42.0 4.36e-01 87.2% 73.4%
3ggyA00 1.20.1260.60 Mainly Alpha › Up-down Bundle › Ferritin › Vacuolar protein sorting-associated protein Ist1 0.61 50.0 4.26e-01 87.2% 78.0%
4ioeA00 1.10.287.850 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › HP0062-like domain 0.61 37.0 4.24e-01 91.5% 81.6%
2vs0A00 1.10.287.1060 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › ESAT-6-like 0.61 37.0 4.36e-01 92.3% 86.6%
4v1gA00 1.20.20.10 Mainly Alpha › Up-down Bundle › F1FO ATP Synthase › F1F0 ATP synthase subunit C 0.60 42.0 4.78e-01 90.6% 100.0%
4wpcA00 1.20.1270.60 Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › Arfaptin homology (AH) domain/BAR domain 0.58 50.0 3.69e-01 90.6% 67.5%
3frrA00 1.20.1260.60 Mainly Alpha › Up-down Bundle › Ferritin › Vacuolar protein sorting-associated protein Ist1 0.58 48.0 4.14e-01 89.7% 74.2%
6pnjL00 1.20.1240.10 Mainly Alpha › Up-down Bundle › Photosystem 1 Reaction Centre Subunit Xi; Chain: L; › Photosystem I PsaL, reaction centre subunit XI 0.58 40.0 3.59e-01 90.6% 52.6%
4ke2A00 6.10.140.1860 Special › Helix non-globular › Helix Hairpins › 0.58 49.0 4.13e-01 92.3% 75.5%
3qsgA02 1.10.1040.10 Mainly Alpha › Orthogonal Bundle › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 0.57 26.0 2.69e-01 79.5% 42.6%
1nzeA00 1.20.120.290 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Oxygen-evolving enhancer protein 3 (PsbQ), four-helix up-down bundle 0.57 31.0 3.23e-01 90.6% 54.5%
1s2xA00 1.20.190.30 Mainly Alpha › Up-down Bundle › Delta-Endotoxin; domain 1 › CAG pathogenicity island protein, CagZ 0.55 39.0 3.44e-01 92.3% 47.8%
1t72A02 1.20.58.220 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphate transport system protein phou homolog 2; domain 2 0.55 33.0 3.64e-01 91.5% 72.4%
1wcrA00 1.20.58.80 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphotransferase system, lactose/cellobiose-type IIA subunit 0.54 36.0 3.81e-01 92.3% 75.7%
4p9fA02 1.20.120.530 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › GntR ligand-binding domain-like 0.54 28.0 2.68e-01 75.2% 38.2%
1qsdA00 1.20.58.90 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.53 41.0 4.45e-01 94.9% 93.1%
6e1kA01 1.10.287.70 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.53 42.0 4.34e-01 85.5% 98.2%
2ddhA04 1.20.140.10 Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › Butyryl-CoA Dehydrogenase, subunit A, domain 3 0.51 34.0 3.30e-01 100.0% 59.1%
4u7iA00 1.20.58.80 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphotransferase system, lactose/cellobiose-type IIA subunit 0.51 32.0 3.56e-01 95.7% 78.5%
6gy8A01 1.20.1170.10 Mainly Alpha › Up-down Bundle › Hemolysin E; Chain: A; › 0.51 42.0 3.04e-01 88.0% 86.7%
4mh6A00 1.10.287.1700 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.51 44.0 3.93e-01 91.5% 69.2%
2bg9C02 1.20.58.390 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Neurotransmitter-gated ion-channel transmembrane domain 0.50 39.0 3.59e-01 90.6% 61.3%
ECOD (32)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3694634 1075.4.1.1 alpha bundles › Type II ABC exporter transmembrane domain fold › Type I ABC exporter transmembrane domain fold › Type I ABC exporter transmembrane domain fold › ABC_membrane 0.68 49.0 3.47e-01 73.5% 25.6%
3772973 3755.3.1.295 alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin › WWC1 0.66 48.0 4.10e-01 76.9% 84.1%
3833386 5058.1.1.0 alpha bundles › Mechanosensitive channel protein MscS (YggB), transmembrane region › Mechanosensitive channel protein MscS (YggB), transmembrane region › Mechanosensitive channel protein MscS (YggB), transmembrane region 0.66 45.0 4.76e-01 83.8% 78.1%
4240852 320.4.1.1 a+b two layers › R3H domain-like › PUB domain › PUB domain › TIMELESS_C 0.66 40.0 3.83e-01 100.0% 52.6%
3633527 3755.1.1.0 alpha bundles › YscO-like › Putative type III secretion protein YscO-related › Putative type III secretion protein YscO-related 0.64 56.0 5.28e-01 96.6% 80.0%
3697765 3755.3.1.0 alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin 0.63 55.0 5.26e-01 95.7% 84.4%
3785344 5086.1.1.0 alpha bundles › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins 0.63 53.0 5.26e-01 99.1% 90.0%
3730934 605.1.1.207 alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase › Tmemb_170 0.62 51.0 4.72e-01 90.6% 86.5%
3588615 604.1.1.0 alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat 0.62 37.0 4.25e-01 92.3% 78.9%
3488722 148.1.3.0 alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain 0.61 46.0 4.14e-01 76.9% 83.7%
4951651 5042.1.1.1 extended segments › Magnesium transport protein CorA, transmembrane region › Magnesium transport protein CorA, transmembrane region › Magnesium transport protein CorA, transmembrane region › CorA 0.61 36.0 4.49e-01 91.5% 100.0%
3686025 604.7.1.10 alpha bundles › Spectrin repeat-like › Tubulin chaperone cofactor A › Tubulin chaperone cofactor A › Tmemb_170 0.59 49.0 4.50e-01 90.6% 84.5%
3866995 604.1.1.24 alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat › DUF4456 0.56 50.0 4.13e-01 98.3% 77.6%
4493711 603.1.1.62 alpha bundles › STAT-like › t-snare proteins › t-snare proteins › CNNM 0.55 41.0 3.70e-01 82.9% 55.8%
3502658 603.1.1.100 alpha bundles › STAT-like › t-snare proteins › t-snare proteins › PF27017 0.55 40.0 3.68e-01 88.9% 60.7%
3546316 3922.1.1.186 alpha bundles › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3 › WWC1 0.54 48.0 4.17e-01 98.3% 89.2%
3967813 5086.1.1.93 alpha bundles › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › HH_EMRA 0.54 48.0 4.60e-01 93.2% 97.7%
3583810 601.1.1.0 alpha bundles › Four-helical up-and-down bundle › alpha-catenin-related › alpha-catenin/vinculin 0.54 33.0 3.25e-01 88.9% 55.2%
3991595 605.1.1.0 alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase 0.54 32.0 3.52e-01 94.9% 72.6%
3937967 4177.1.1.0 alpha duplicates or obligate multimers › BAR/IMD domain-like › BAR/IMD domain-like › BAR/IMD domain-like 0.53 47.0 3.97e-01 95.7% 65.8%
3788425 1065.1.1.1 alpha bundles › SPX domain › SPX domain › SPX domain › SPX 0.53 43.0 3.42e-01 85.5% 74.2%
3229891 5057.1.1.0 alpha bundles › Neurotransmitter-gated ion-channel transmembrane pore › Neurotransmitter-gated ion-channel transmembrane pore › Neurotransmitter-gated ion-channel transmembrane pore 0.53 38.0 3.66e-01 99.1% 65.2%
5028641 150.5.1.0 alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › ESAT-6 like › ESAT-6 like 0.52 45.0 3.73e-01 98.3% 53.7%
3167394 874.1.1.0 a+b duplicates or obligate multimers › Smc hinge domain › Smc hinge domain › Smc hinge domain 0.52 44.0 3.33e-01 88.9% 40.8%
3273884 1076.1.1.1 alpha bundles › Intramembrane protease Rce1-related › Intramembrane protease Rce1-related › Intramembrane protease Rce1-related › Rce1-like 0.52 46.0 3.60e-01 98.3% 63.1%
3399224 603.1.1.0 alpha bundles › STAT-like › t-snare proteins › t-snare proteins 0.52 47.0 4.06e-01 98.3% 93.9%
3633320 4177.1.1.2 alpha duplicates or obligate multimers › BAR/IMD domain-like › BAR/IMD domain-like › BAR/IMD domain-like › BAR 0.52 48.0 3.61e-01 100.0% 71.5%
3424439 611.9.1.4 alpha bundles › N-cbl like › Resistance protein (Rx) N-terminal domain › Resistance protein (Rx) N-terminal domain › Rx_N 0.51 35.0 3.07e-01 98.3% 44.3%
4574762 3782.1.1.4 a+b duplicates or obligate multimers › Envelope glycoprotein GP2-related › Envelope glycoprotein GP2-related › Envelope glycoprotein GP2-related › DUF2127 0.51 41.0 3.72e-01 82.9% 100.0%
3393794 3922.1.1.211 alpha bundles › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3 › DRC7_C 0.51 45.0 4.30e-01 96.6% 91.1%
3280015 191.1.1.8 alpha bundles › Tetracyclin repressor-like, C-terminal domain › Tetracyclin repressor-like, C-terminal domain › Tetracyclin repressor-like, C-terminal domain › TetR_C_33 0.51 32.0 3.04e-01 88.9% 53.3%
3786078 109.4.1.1764 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PF28917 0.50 45.0 2.96e-01 99.1% 36.6%