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hypothetical_protein_MIV023R

Euk-Vir

Invertebrate_iridescent_virus_3

hypothetical_protein_MIV023R__YP_654595__Invertebrate_iridescent_virus_3__345201

Identity

Accession:
YP_654595 ↗
Protein ID:
hypothetical_protein_MIV023R
Kingdom:
euk

Quality

83.6 mean pLDDT

Taxonomy

Bamfordvirae› Nucleocytoviricota› Megaviricetes› Pimascovirales› Iridoviridae› Chloriridovirus› Invertebrate_iridescent_virus_3

TaxID: 345201

Cluster

View cluster (2 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 1-103
PDB
Domain cluster: representative
CATH (22)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2rdcA00 1.10.287.800 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › protein ne1242 0.68 35.0 3.23e-01 100.0% 39.1%
3jsbA01 1.20.1440.300 Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › RNA-directed RNA polymerase L, helical domain 0.65 38.0 4.23e-01 77.7% 74.1%
2kgfA00 1.10.375.10 Mainly Alpha › Orthogonal Bundle › Human Immunodeficiency Virus Type 1 Capsid Protein › Human Immunodeficiency Virus Type 1 Capsid Protein 0.63 46.0 4.19e-01 76.7% 65.0%
3w0fA02 1.10.8.50 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › 0.61 44.0 4.03e-01 79.6% 57.4%
3ucaA00 1.10.600.10 Mainly Alpha › Orthogonal Bundle › Farnesyl Diphosphate Synthase › Farnesyl Diphosphate Synthase 0.59 43.0 3.11e-01 75.7% 52.6%
1ds8M02 1.20.85.10 Mainly Alpha › Up-down Bundle › Photosynthetic Reaction Center, subunit M; domain 1 › Photosystem II protein D1-like 0.57 41.0 3.60e-01 100.0% 48.7%
6p6jB02 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.57 41.0 3.15e-01 73.8% 32.8%
4q4hA02 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.57 40.0 3.01e-01 71.8% 30.3%
3kheA01 1.10.238.10 Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › EF-hand 0.57 41.0 4.13e-01 76.7% 100.0%
2qkwA00 1.20.1270.140 Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › AvrPto 0.57 45.0 4.53e-01 83.5% 100.0%
7e5aB02 1.20.1000.10 Mainly Alpha › Up-down Bundle › Signaling Protein - Interferon-induced Guanylate-binding Protein 1; Chain A, domain 1 › Guanylate-binding protein, C-terminal domain 0.56 43.0 3.63e-01 98.1% 50.0%
4ymuD00 1.10.3720.10 Mainly Alpha › Orthogonal Bundle › MetI-like fold › MetI-like 0.56 39.0 3.15e-01 72.8% 66.5%
1ciiA03 1.10.490.30 Mainly Alpha › Orthogonal Bundle › Globin-like › Colicin 0.56 44.0 3.90e-01 87.4% 99.4%
6o0aA01 1.10.490.10 Mainly Alpha › Orthogonal Bundle › Globin-like › Globins 0.54 48.0 4.21e-01 97.1% 80.5%
2qqyA00 1.20.1260.10 Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle 0.54 36.0 3.26e-01 75.7% 50.7%
1hbgA00 1.10.490.10 Mainly Alpha › Orthogonal Bundle › Globin-like › Globins 0.53 43.0 3.87e-01 89.3% 62.6%
3mvcB00 1.10.490.10 Mainly Alpha › Orthogonal Bundle › Globin-like › Globins 0.52 47.0 4.07e-01 98.1% 82.5%
1f0lA02 1.10.490.40 Mainly Alpha › Orthogonal Bundle › Globin-like › Diphtheria toxin, translocation domain 0.52 46.0 3.85e-01 97.1% 57.6%
1s7zA01 1.20.120.780 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › DNA mimic ocr 0.52 34.0 3.51e-01 90.3% 68.3%
3cx5A02 3.30.830.10 Alpha Beta › 2-Layer Sandwich › Cytochrome Bc1 Complex; Chain A, domain 1 › Metalloenzyme, LuxS/M16 peptidase-like 0.51 38.0 2.95e-01 77.7% 75.8%
3whjA00 6.10.140.1710 Special › Helix non-globular › Helix Hairpins › 0.51 42.0 4.16e-01 94.2% 82.9%
3d31A01 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.50 37.0 2.90e-01 78.6% 51.5%
ECOD (21)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3264752 4044.1.1.0 ↗ alpha bundles › Helical bundle domain in prismane-like proteins › Helical bundle domain in prismane-like proteins › Helical bundle domain in prismane-like proteins 0.68 47.0 4.23e-01 85.4% 51.7%
3670748 5086.1.1.0 ↗ alpha bundles › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins 0.63 38.0 3.41e-01 96.1% 45.0%
3975669 162.1.1.0 ↗ alpha bundles › PTS-regulatory domain, PRD › PTS-regulatory domain, PRD › PTS-regulatory domain, PRD 0.59 47.0 4.76e-01 87.4% 84.8%
4024889 108.1.1.97 ↗ alpha arrays › EF-hand › EF-hand-related › EF-hand › EF-hand_1, EF-hand_7 0.59 46.0 4.42e-01 84.5% 98.3%
3585743 106.1.1.0 ↗ alpha arrays › Globin-like › Globin-like › Globin-like 0.57 50.0 4.28e-01 96.1% 81.8%
3176372 3949.1.1.3 ↗ alpha arrays › tRNA delta(2)-isopentenylpyrophosphate transferase helical insertion domain › tRNA delta(2)-isopentenylpyrophosphate transferase helical insertion domain › tRNA delta(2)-isopentenylpyrophosphate transferase helical insertion domain › SLS1_N 0.57 38.0 4.29e-01 73.8% 100.0%
3536512 192.29.1.100 ↗ alpha bundles › Long alpha-hairpin › bMERB domain (bivalent Mical/EHBP Rab binding) › bMERB domain (bivalent Mical/EHBP Rab binding) › DUF4211 0.57 40.0 3.60e-01 74.8% 99.3%
4970129 604.39.1.40 ↗ alpha bundles › Spectrin repeat-like › S-component of energy-coupling factor (ECF) transporters › S-component of energy-coupling factor (ECF) transporters › DUF6580 0.57 45.0 4.12e-01 97.1% 64.4%
3782312 4177.1.1.1 ↗ alpha duplicates or obligate multimers › BAR/IMD domain-like › BAR/IMD domain-like › BAR/IMD domain-like › FCH 0.56 43.0 3.10e-01 81.6% 73.6%
3975487 101.1.4.31 ↗ alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like › DUF5347 0.55 44.0 4.59e-01 86.4% 93.7%
3571379 193.1.1.18 ↗ alpha bundles › CH domain-like › Calponin-homology domain-like › Calponin-homology domain-like › DUF2465 0.55 45.0 4.23e-01 89.3% 100.0%
4526671 604.5.1.0 ↗ alpha bundles › Spectrin repeat-like › PhoU-like (Pfam 01895) › PhoU-like (Pfam 01895) 0.54 42.0 3.18e-01 84.5% 35.6%
5045348 604.34.1.0 ↗ alpha bundles › Spectrin repeat-like › Helical bundle domain in arginine decarboxylase › Helical bundle domain in arginine decarboxylase 0.53 35.0 3.81e-01 96.1% 81.2%
3712026 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.53 36.0 3.19e-01 70.9% 73.8%
3785673 3881.1.1.1 ↗ alpha bundles › CNOT9 binding domain CN9BD (DUF3819) › CNOT9 binding domain CN9BD (DUF3819) › CNOT9 binding domain CN9BD (DUF3819) › DUF3819 0.53 43.0 3.50e-01 88.3% 72.0%
3789160 193.1.1.2 ↗ alpha bundles › CH domain-like › Calponin-homology domain-like › Calponin-homology domain-like › Nuf2 0.52 43.0 3.70e-01 91.3% 82.4%
3487854 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.52 41.0 2.72e-01 83.5% 35.4%
3573529 106.1.1.1 ↗ alpha arrays › Globin-like › Globin-like › Globin-like › Globin 0.52 44.0 3.77e-01 94.2% 61.8%
3228465 604.4.1.0 ↗ alpha bundles › Spectrin repeat-like › Alpha-hemoglobin stabilizing protein AHSP › Alpha-hemoglobin stabilizing protein AHSP 0.51 43.0 4.36e-01 92.2% 96.2%
3705029 5076.1.1.1 ↗ alpha complex topology › Mitochondrial ADP/ATP carrier-like › Mitochondrial ADP/ATP carrier › Mitochondrial ADP/ATP carrier › Mito_carr 0.51 44.0 3.30e-01 98.1% 98.6%
1148128 622.5.1.1 ↗ alpha bundles › YvfG-like › Probable 26S proteasome regulatory subunit p27 › Probable 26S proteasome regulatory subunit p27 › Nas2_N 0.51 42.0 4.16e-01 94.2% 82.9%