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hypothetical_protein_MIV024R

Euk-Vir

Invertebrate_iridescent_virus_3

hypothetical_protein_MIV024R__YP_654596__Invertebrate_iridescent_virus_3__345201

Identity

Accession:
YP_654596 ↗
Protein ID:
hypothetical_protein_MIV024R
Kingdom:
euk

Quality

73.2 mean pLDDT

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 59-104_398-452
PDB
Domain cluster: representative
D2 medium residues 105-246
PDB
Domain cluster: representative
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF00112.30 best Peptidase_C1 48.6 1.50e-12 84.5% 44.5%
CATH (11)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1jqpA02 3.90.70.10 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases 0.87 65.0 5.43e-01 100.0% 48.2%
3iutA00 3.90.70.10 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases 0.83 65.0 5.54e-01 97.9% 53.0%
1xkgA00 3.90.70.10 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases 0.83 61.0 4.66e-01 97.9% 35.6%
6zq3A01 3.90.70.10 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases 0.83 63.0 5.41e-01 100.0% 52.9%
3pnrA00 3.90.70.10 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases 0.83 63.0 5.14e-01 97.9% 45.8%
5egwA00 3.90.70.10 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases 0.83 63.0 4.55e-01 99.3% 30.6%
5fpwA00 3.90.70.10 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases 0.83 70.0 5.33e-01 100.0% 42.5%
1act000 3.90.70.10 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases 0.80 61.0 5.19e-01 97.9% 51.4%
1deuB00 3.90.70.10 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases 0.76 67.0 5.28e-01 100.0% 49.4%
3pw3D00 3.90.70.10 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases 0.67 62.0 4.53e-01 99.3% 51.0%
3safA02 1.10.150.80 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › HRDC domain 0.55 33.0 3.84e-01 87.3% 84.0%
ECOD (67)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3906939 219.1.1.1 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Peptidase_C1 0.87 65.0 4.90e-01 100.0% 35.7%
4770613 219.1.1.1 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Peptidase_C1 0.87 65.0 6.24e-01 100.0% 68.3%
3497089 219.1.1.0 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases 0.86 66.0 5.00e-01 100.0% 36.7%
3486878 219.1.1.110 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Peptidase_C1, Peptidase_C1_2 0.86 66.0 4.92e-01 100.0% 35.7%
3938586 219.1.1.1 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Peptidase_C1 0.85 64.0 5.07e-01 97.9% 41.9%
3514367 219.1.1.1 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Peptidase_C1 0.85 66.0 5.12e-01 100.0% 41.1%
4024611 219.1.1.0 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases 0.84 63.0 4.54e-01 97.9% 30.4%
3514380 219.1.1.110 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Peptidase_C1, Peptidase_C1_2 0.84 65.0 4.91e-01 100.0% 37.0%
3940207 219.1.1.1 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Peptidase_C1 0.84 63.0 5.15e-01 99.3% 45.1%
4505160 219.1.1.1 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Peptidase_C1 0.84 63.0 4.89e-01 97.9% 39.1%
4047160 219.1.1.1 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Peptidase_C1 0.84 61.0 5.02e-01 97.9% 44.2%
4024199 219.1.1.0 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases 0.84 63.0 4.68e-01 97.9% 34.0%
3674913 219.1.1.0 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases 0.84 55.0 4.99e-01 84.5% 51.4%
None 0.83 65.0 4.77e-01 97.9% 34.3%
3488949 219.1.1.1 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Peptidase_C1 0.83 62.0 5.08e-01 97.9% 45.5%
3676121 219.1.1.1 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Peptidase_C1 0.83 64.0 5.41e-01 99.3% 51.6%
4024702 219.1.1.1 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Peptidase_C1 0.83 63.0 5.03e-01 97.9% 43.1%
3261680 219.1.1.1 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Peptidase_C1 0.83 68.0 5.25e-01 97.2% 41.9%
3884055 219.1.1.110 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Peptidase_C1, Peptidase_C1_2 0.83 62.0 5.03e-01 97.9% 44.0%
3567565 219.1.1.1 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Peptidase_C1 0.83 63.0 4.84e-01 97.9% 38.3%
5056229 219.1.1.1 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Peptidase_C1 0.83 61.0 4.97e-01 97.9% 44.0%
3996190 219.1.1.1 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Peptidase_C1 0.82 63.0 6.14e-01 99.3% 72.5%
3509928 219.1.1.0 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases 0.82 63.0 4.37e-01 99.3% 27.4%
3807595 219.1.1.0 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases 0.82 62.0 4.54e-01 97.9% 32.4%
4783690 219.1.1.1 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Peptidase_C1 0.82 55.0 6.39e-01 85.2% 91.5%
4053732 219.1.1.1 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Peptidase_C1 0.82 62.0 4.67e-01 99.3% 35.4%
3392327 219.1.1.1 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Peptidase_C1 0.81 62.0 5.00e-01 97.9% 44.4%
3617140 219.1.1.0 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases 0.81 62.0 4.67e-01 97.9% 35.8%
3443485 219.1.1.0 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases 0.81 62.0 4.47e-01 97.9% 31.4%
3264598 219.1.1.1 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Peptidase_C1 0.81 63.0 5.44e-01 97.9% 55.4%
3865831 219.1.1.0 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases 0.81 62.0 4.62e-01 97.9% 34.5%
3940173 219.1.1.1 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Peptidase_C1 0.81 61.0 5.05e-01 99.3% 47.0%
4978305 219.1.1.1 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Peptidase_C1 0.81 64.0 4.88e-01 100.0% 39.3%
5034502 219.1.1.1 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Peptidase_C1 0.81 63.0 5.30e-01 100.0% 51.1%
3470973 219.1.1.110 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Peptidase_C1, Peptidase_C1_2 0.80 62.0 5.03e-01 99.3% 45.9%
3421122 219.1.1.1 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Peptidase_C1 0.80 63.0 5.04e-01 97.9% 45.6%
3401763 219.1.1.1 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Peptidase_C1 0.80 62.0 5.09e-01 99.3% 47.5%
3391656 219.1.1.1 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Peptidase_C1 0.80 65.0 4.89e-01 97.9% 38.4%
3229331 219.1.1.1 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Peptidase_C1 0.79 61.0 4.96e-01 97.9% 45.9%
3244679 219.1.1.1 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Peptidase_C1 0.79 73.0 5.24e-01 97.9% 37.6%
3620332 219.1.1.1 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Peptidase_C1 0.79 73.0 5.29e-01 97.2% 40.8%
3584686 219.1.1.1 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Peptidase_C1 0.79 70.0 5.52e-01 93.0% 61.1%
3250297 219.1.1.1 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Peptidase_C1 0.79 67.0 5.15e-01 94.4% 44.3%
None 0.79 63.0 4.59e-01 97.9% 34.1%
3705335 219.1.1.1 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Peptidase_C1 0.79 65.0 5.16e-01 97.9% 46.5%
3993857 219.1.1.1 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Peptidase_C1 0.78 74.0 5.56e-01 100.0% 47.3%
3426348 219.1.1.1 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Peptidase_C1 0.78 61.0 5.72e-01 97.9% 67.6%
3216614 219.1.1.1 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Peptidase_C1 0.77 67.0 4.94e-01 100.0% 39.4%
3519107 219.1.1.1 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Peptidase_C1 0.77 71.0 5.24e-01 97.9% 47.6%
3226100 219.1.1.1 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Peptidase_C1 0.76 62.0 4.89e-01 97.9% 44.1%
5005855 219.1.1.1 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Peptidase_C1 0.76 64.0 5.34e-01 97.2% 55.1%
3510485 219.1.1.1 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Peptidase_C1 0.76 70.0 5.23e-01 97.9% 48.0%
3395889 219.1.1.2 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Peptidase_C1,Propeptide_C1 0.76 70.0 5.25e-01 97.9% 45.9%
3891882 219.1.1.1 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Peptidase_C1 0.75 67.0 5.13e-01 97.9% 45.6%
3813985 219.1.1.124 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › PF29469 0.75 51.0 4.29e-01 84.5% 43.1%
3242975 219.1.1.1 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Peptidase_C1 0.75 69.0 5.11e-01 97.9% 41.2%
3998812 219.1.1.1 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Peptidase_C1 0.75 68.0 4.97e-01 99.3% 39.7%
3479869 219.1.1.0 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases 0.75 69.0 5.18e-01 97.9% 46.0%
4377695 219.1.1.2 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Peptidase_C1,Propeptide_C1 0.75 69.0 5.21e-01 97.9% 47.0%
3489030 219.1.1.1 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Peptidase_C1 0.74 69.0 5.22e-01 97.9% 46.1%
3505106 219.1.1.1 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Peptidase_C1 0.74 68.0 6.19e-01 95.8% 75.6%
3564430 219.1.1.1 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Peptidase_C1 0.72 67.0 4.98e-01 99.3% 43.4%
4024826 219.1.1.1 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Peptidase_C1 0.70 62.0 4.38e-01 94.4% 34.4%
3669025 219.1.1.0 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases 0.69 59.0 4.63e-01 91.5% 46.0%
3830240 109.4.1.84 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › API5 0.69 60.0 3.89e-01 97.9% 23.0%
3832249 219.1.1.0 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases 0.66 58.0 4.57e-01 97.2% 48.0%
3466659 219.1.1.1 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Peptidase_C1 0.60 46.0 3.92e-01 85.2% 50.7%
D3 medium residues 247-397
PDB
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF00112.30 best Peptidase_C1 42.2 1.40e-10 88.1% 23.2%
CATH (11)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1sp4B00 3.90.70.10 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases 0.91 56.0 4.94e-01 91.4% 45.9%
3iutA00 3.90.70.10 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases 0.81 50.0 4.34e-01 91.4% 42.8%
4oelB00 2.40.50.170 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Cysteine proteinases. Chain C 0.81 30.0 4.66e-01 88.1% 79.7%
1deuB00 3.90.70.10 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases 0.80 53.0 4.29e-01 91.4% 38.7%
1jqpA02 3.90.70.10 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases 0.79 53.0 4.50e-01 91.4% 44.7%
2wbfX00 3.90.70.10 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases 0.79 58.0 4.67e-01 91.4% 42.6%
3pnrA00 3.90.70.10 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases 0.73 50.0 4.22e-01 91.4% 43.8%
2l89A00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.68 32.0 3.77e-01 83.4% 62.0%
2db9A01 3.90.70.200 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Plus-3 domain 0.64 37.0 3.98e-01 92.1% 64.7%
4fm4B02 2.30.30.50 Mainly Beta › Roll › SH3 type barrels. › 0.58 36.0 4.28e-01 85.4% 92.1%
2e12A00 2.30.30.720 Mainly Beta › Roll › SH3 type barrels. › Protein of unknown function (DUF3247) 0.58 31.0 3.81e-01 85.4% 82.8%
ECOD (22)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3495032 219.1.1.1 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Peptidase_C1 0.91 56.0 4.86e-01 91.4% 43.7%
3940207 219.1.1.1 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Peptidase_C1 0.86 56.0 4.63e-01 91.4% 40.6%
3226605 219.1.1.1 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Peptidase_C1 0.85 58.0 5.19e-01 91.4% 52.5%
3710887 219.1.1.1 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Peptidase_C1 0.82 50.0 4.45e-01 91.4% 45.3%
3793700 219.1.1.110 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Peptidase_C1, Peptidase_C1_2 0.81 53.0 5.24e-01 91.4% 62.5%
3574352 4.1.1.332 beta barrels › SH3 › SH3 › SH3 › Peptidase_C1 0.81 53.0 6.15e-01 91.4% 90.0%
3433434 219.1.1.1 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Peptidase_C1 0.80 53.0 4.61e-01 90.7% 47.0%
3791026 219.1.1.0 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases 0.79 54.0 4.14e-01 91.4% 32.5%
4960361 219.1.1.1 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Peptidase_C1 0.78 58.0 4.66e-01 91.4% 41.1%
3439789 219.1.1.0 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases 0.77 56.0 5.28e-01 90.7% 63.4%
4024702 219.1.1.1 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Peptidase_C1 0.76 52.0 4.30e-01 91.4% 41.2%
4024199 219.1.1.0 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases 0.75 52.0 3.93e-01 91.4% 32.4%
3776905 219.1.1.1 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Peptidase_C1 0.74 54.0 4.44e-01 91.4% 43.5%
3865831 219.1.1.0 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases 0.74 54.0 4.11e-01 91.4% 34.8%
3830352 4.1.1.94 beta barrels › SH3 › SH3 › SH3 › SAWADEE 0.61 33.0 4.31e-01 90.7% 94.1%
3770802 4.1.1.248 beta barrels › SH3 › SH3 › SH3 › CABIT 0.60 38.0 4.59e-01 90.7% 95.0%
3593474 219.1.1.0 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases 0.60 46.0 4.14e-01 100.0% 58.6%
3907178 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.59 39.0 4.52e-01 90.7% 94.3%
3731692 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.55 33.0 3.54e-01 84.1% 68.5%
3598651 219.1.1.0 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases 0.52 45.0 3.40e-01 90.7% 41.8%
3422852 4.1.1.85 beta barrels › SH3 › SH3 › SH3 › MTR4_beta-barrel 0.51 32.0 3.47e-01 76.8% 74.4%
4262943 220.1.1.184 beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_S11IP 0.51 35.0 3.80e-01 90.1% 84.8%
D4 medium residues 453-487
PDB