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hypothetical_protein_MIV048L

Euk-Vir

Invertebrate_iridescent_virus_3

hypothetical_protein_MIV048L__YP_654620__Invertebrate_iridescent_virus_3__345201

Identity

Accession:
YP_654620 ↗
Protein ID:
hypothetical_protein_MIV048L
Kingdom:
euk

Quality

85.4 mean pLDDT

Taxonomy

Bamfordvirae› Nucleocytoviricota› Megaviricetes› Pimascovirales› Iridoviridae› Chloriridovirus› Invertebrate_iridescent_virus_3

TaxID: 345201

Cluster

View cluster (111 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 157-350
PDB
Domain cluster: rep: ribonucleoside-diphosphate_reductase_small_chain__YP_009001342__Pithovirus_sibericum__1450746__D163-306
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF00268.28 best Ribonuc_red_sm 117.0 1.40e-33 95.4% 59.1%
CATH (27)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4a5dB00 1.10.620.20 Mainly Alpha › Orthogonal Bundle › Ribonucleotide Reductase, subunit A › Ribonucleotide Reductase, subunit A 0.91 63.0 5.89e-01 93.3% 59.1%
2aniA00 1.10.620.20 Mainly Alpha › Orthogonal Bundle › Ribonucleotide Reductase, subunit A › Ribonucleotide Reductase, subunit A 0.90 83.0 6.79e-01 97.4% 57.7%
2rccA01 1.10.620.20 Mainly Alpha › Orthogonal Bundle › Ribonucleotide Reductase, subunit A › Ribonucleotide Reductase, subunit A 0.90 72.0 6.43e-01 89.7% 61.8%
1h0oA00 1.10.620.20 Mainly Alpha › Orthogonal Bundle › Ribonucleotide Reductase, subunit A › Ribonucleotide Reductase, subunit A 0.89 74.0 6.33e-01 97.9% 57.6%
5olkB01 1.10.620.20 Mainly Alpha › Orthogonal Bundle › Ribonucleotide Reductase, subunit A › Ribonucleotide Reductase, subunit A 0.88 81.0 7.00e-01 99.5% 65.6%
4bmoA00 1.10.620.20 Mainly Alpha › Orthogonal Bundle › Ribonucleotide Reductase, subunit A › Ribonucleotide Reductase, subunit A 0.87 78.0 6.65e-01 100.0% 61.7%
1biqA00 1.10.620.20 Mainly Alpha › Orthogonal Bundle › Ribonucleotide Reductase, subunit A › Ribonucleotide Reductase, subunit A 0.87 84.0 6.76e-01 100.0% 61.5%
6eboA00 1.10.620.20 Mainly Alpha › Orthogonal Bundle › Ribonucleotide Reductase, subunit A › Ribonucleotide Reductase, subunit A 0.87 75.0 6.26e-01 100.0% 55.9%
3ee4A00 1.10.620.20 Mainly Alpha › Orthogonal Bundle › Ribonucleotide Reductase, subunit A › Ribonucleotide Reductase, subunit A 0.82 67.0 5.73e-01 90.2% 56.4%
6v9zA02 1.20.1560.10 Mainly Alpha › Up-down Bundle › ABC transporter transmembrane region fold › ABC transporter type 1, transmembrane domain 0.73 53.0 4.40e-01 74.2% 88.6%
1qsdA00 1.20.58.90 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.71 38.0 5.21e-01 74.7% 100.0%
3ajmB02 1.20.120.330 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Nucleotidyltransferases domain 2 0.69 33.0 3.94e-01 87.1% 64.7%
4cqiA00 1.20.58.90 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.68 38.0 5.07e-01 84.0% 100.0%
3zdqA01 1.20.1560.10 Mainly Alpha › Up-down Bundle › ABC transporter transmembrane region fold › ABC transporter type 1, transmembrane domain 0.68 49.0 4.09e-01 74.7% 86.5%
4mrsA01 1.20.1560.10 Mainly Alpha › Up-down Bundle › ABC transporter transmembrane region fold › ABC transporter type 1, transmembrane domain 0.66 50.0 4.14e-01 78.4% 86.5%
1fewA00 1.20.58.70 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.62 44.0 4.67e-01 80.9% 80.9%
3dbyL00 1.20.1260.120 Mainly Alpha › Up-down Bundle › Ferritin › Protein of unknown function DUF2935 0.58 34.0 3.05e-01 89.7% 41.9%
2b0hA01 1.20.120.230 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Alpha-catenin/vinculin-like 0.57 35.0 4.27e-01 72.7% 92.2%
1o5hA00 1.20.120.680 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Formiminotetrahydrofolate cyclodeaminase monomer, up-and-down helical bundle 0.57 44.0 4.39e-01 97.9% 77.5%
4oydB00 1.10.132.20 Mainly Alpha › Orthogonal Bundle › Topoisomerase I; Chain A, domain 4 › Ribosome-recycling factor 0.56 34.0 4.26e-01 80.4% 99.1%
3efzB00 1.20.190.20 Mainly Alpha › Up-down Bundle › Delta-Endotoxin; domain 1 › 14-3-3 domain 0.55 47.0 4.47e-01 89.7% 79.6%
2lqgA00 1.20.120.230 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Alpha-catenin/vinculin-like 0.54 32.0 3.75e-01 89.7% 81.9%
1io1A01 1.20.1330.10 Mainly Alpha › Up-down Bundle › f41 fragment of flagellin, N-terminal domain › f41 fragment of flagellin, N-terminal domain 0.54 38.0 4.05e-01 72.7% 82.2%
1dn1B00 1.20.58.70 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.51 42.0 4.04e-01 85.6% 80.6%
4etrB00 1.20.1260.10 Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle 0.51 31.0 3.86e-01 87.6% 96.7%
4epzA00 1.25.40.810 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › UpxZ 0.50 33.0 3.68e-01 91.8% 83.1%
1dowA00 1.20.120.230 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Alpha-catenin/vinculin-like 0.50 39.0 3.85e-01 79.9% 87.3%
ECOD (32)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3386562 150.1.2.1 ↗ alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › Ferritin/Heme oxygenase › Heme oxygenase/Ribonucleotide reductase › Ribonuc_red_sm 0.92 82.0 6.68e-01 100.0% 55.1%
4488174 150.1.2.1 ↗ alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › Ferritin/Heme oxygenase › Heme oxygenase/Ribonucleotide reductase › Ribonuc_red_sm 0.90 83.0 6.69e-01 100.0% 55.5%
151585 150.1.2.1 ↗ alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › Ferritin/Heme oxygenase › Heme oxygenase/Ribonucleotide reductase › Ribonuc_red_sm 0.90 73.0 6.40e-01 95.4% 60.4%
4603349 150.1.2.1 ↗ alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › Ferritin/Heme oxygenase › Heme oxygenase/Ribonucleotide reductase › Ribonuc_red_sm 0.89 76.0 6.02e-01 100.0% 47.9%
2388926 150.1.2.1 ↗ alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › Ferritin/Heme oxygenase › Heme oxygenase/Ribonucleotide reductase › Ribonuc_red_sm 0.89 83.0 6.93e-01 100.0% 61.7%
3968133 150.1.2.1 ↗ alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › Ferritin/Heme oxygenase › Heme oxygenase/Ribonucleotide reductase › Ribonuc_red_sm 0.89 84.0 6.67e-01 100.0% 54.3%
4340194 150.1.2.1 ↗ alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › Ferritin/Heme oxygenase › Heme oxygenase/Ribonucleotide reductase › Ribonuc_red_sm 0.88 78.0 6.48e-01 100.0% 58.0%
1726039 150.1.2.1 ↗ alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › Ferritin/Heme oxygenase › Heme oxygenase/Ribonucleotide reductase › Ribonuc_red_sm 0.87 84.0 6.75e-01 99.5% 61.4%
56518 150.1.2.0 ↗ alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › Ferritin/Heme oxygenase › Heme oxygenase/Ribonucleotide reductase 0.87 84.0 6.73e-01 99.5% 61.4%
436631 150.1.2.1 ↗ alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › Ferritin/Heme oxygenase › Heme oxygenase/Ribonucleotide reductase › Ribonuc_red_sm 0.87 84.0 6.63e-01 99.5% 59.1%
2846952 150.1.2.1 ↗ alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › Ferritin/Heme oxygenase › Heme oxygenase/Ribonucleotide reductase › Ribonuc_red_sm 0.87 75.0 6.20e-01 100.0% 55.3%
3622487 604.7.1.1 ↗ alpha bundles › Spectrin repeat-like › Tubulin chaperone cofactor A › Tubulin chaperone cofactor A › TBCA 0.70 39.0 5.19e-01 73.2% 98.2%
3598836 604.7.1.0 ↗ alpha bundles › Spectrin repeat-like › Tubulin chaperone cofactor A › Tubulin chaperone cofactor A 0.67 39.0 5.09e-01 75.3% 100.0%
3701245 604.7.1.1 ↗ alpha bundles › Spectrin repeat-like › Tubulin chaperone cofactor A › Tubulin chaperone cofactor A › TBCA 0.67 38.0 5.00e-01 76.8% 99.1%
3276992 1075.1.2.1 ↗ alpha bundles › Type II ABC exporter transmembrane domain fold › Type II ABC exporter transmembrane domain-related › MacB transmembrane domain › FtsX 0.65 46.0 4.44e-01 71.6% 75.3%
3572847 604.1.1.162 ↗ alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat › DUF4716 0.64 35.0 4.45e-01 90.2% 89.6%
3937243 604.1.1.139 ↗ alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat › DUF7799 0.63 44.0 4.98e-01 90.7% 93.8%
3390615 5069.1.1.7 ↗ alpha bundles › Transmembrane heme-binding four-helical bundle › Transmembrane heme-binding four-helical bundle › Transmembrane di-heme cytochromes › Cytochrom_B561 0.61 45.0 4.33e-01 75.8% 97.3%
3699680 1075.1.2.1 ↗ alpha bundles › Type II ABC exporter transmembrane domain fold › Type II ABC exporter transmembrane domain-related › MacB transmembrane domain › FtsX 0.61 51.0 4.88e-01 90.2% 90.4%
3385321 601.1.2.0 ↗ alpha bundles › Four-helical up-and-down bundle › alpha-catenin-related › I/LWEQ domain (Pfam 01608) 0.60 44.0 4.26e-01 76.3% 67.0%
5047796 5001.1.1.0 ↗ alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like 0.59 41.0 3.81e-01 70.1% 59.6%
3358814 3684.1.1.2 ↗ alpha complex topology › PSPTO4464 C-terminal domain-like › PSPTO4464 C-terminal domain-like › PSPTO4464 C-terminal domain-like › BPS1 0.59 43.0 3.91e-01 83.0% 56.9%
4955374 5050.1.1.9 ↗ alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › MFS_1 0.59 42.0 4.00e-01 71.6% 85.3%
3715090 109.24.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › Helical domain in dedicator of cytokinesis protein 9 › Helical domain in dedicator of cytokinesis protein 9 0.58 35.0 4.45e-01 99.5% 100.0%
4979857 604.5.1.1 ↗ alpha bundles › Spectrin repeat-like › PhoU-like (Pfam 01895) › PhoU-like (Pfam 01895) › PhoU_div 0.56 44.0 4.18e-01 79.4% 88.2%
2492086 192.29.1.0 ↗ alpha bundles › Long alpha-hairpin › bMERB domain (bivalent Mical/EHBP Rab binding) › bMERB domain (bivalent Mical/EHBP Rab binding) 0.56 39.0 4.47e-01 71.6% 93.2%
3880244 603.2.1.24 ↗ alpha bundles › STAT-like › STAT › STAT › TBCA_PH 0.54 40.0 4.44e-01 75.3% 98.7%
4527272 1075.1.1.20 ↗ alpha bundles › Type II ABC exporter transmembrane domain fold › Type II ABC exporter transmembrane domain-related › ABCG5/ABCG8 transmembrane domain › ABC2_membrane+PDR_CDR 0.53 42.0 3.00e-01 83.0% 72.8%
3616967 603.1.1.97 ↗ alpha bundles › STAT-like › t-snare proteins › t-snare proteins › Syntaxin, SNARE 0.53 42.0 3.83e-01 82.5% 71.8%
4304173 1075.1.1.1 ↗ alpha bundles › Type II ABC exporter transmembrane domain fold › Type II ABC exporter transmembrane domain-related › ABCG5/ABCG8 transmembrane domain › ABC2_membrane 0.53 39.0 3.54e-01 76.3% 81.5%
3394756 150.1.1.0 ↗ alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › Ferritin/Heme oxygenase › Ferritin 0.51 41.0 3.57e-01 84.5% 75.0%
3938641 603.1.1.0 ↗ alpha bundles › STAT-like › t-snare proteins › t-snare proteins 0.51 40.0 3.97e-01 84.5% 77.6%