hypothetical_protein_MIV059L

Euk-Vir

Invertebrate_iridescent_virus_3

hypothetical_protein_MIV059L__YP_654631__Invertebrate_iridescent_virus_3__345201

Identity

75.8 mean pLDDT

Bamfordvirae› Nucleocytoviricota› Megaviricetes› Pimascovirales› Iridoviridae› Chloriridovirus› Invertebrate_iridescent_virus_3

TaxID: 345201

View cluster (15 members)

Download PDB Download Scores JSON

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 34-245

PDB

Domain cluster: rep: Hypothetical_protein_SPPV_50__NP_659626__Sheeppox_virus__10266__D1-82_143-236

Pfam (2)

Accession	Name	Score	E-value	Q cov	HMM cov
PF03159.25 best	XRN_N	89.6	3.00e-25	52.4%	43.1%
PF03159.25	XRN_N	55.9	6.10e-15	44.3%	32.8%

D2 high residues 285-445

PDB

Domain cluster: representative

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF17846.7 best	XRN_M	25.0	1.30e-05	45.3%	10.9%

ECOD (4)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3716031	3279.1.1.1 ↗	alpha arrays › Helical domain in 5'->3' exoribonucleases › Helical domain in 5'->3' exoribonucleases › Helical domain in 5'->3' exoribonucleases › XRN_M	0.78	68.0	5.42e-01	100.0%	50.0%
3600228	3279.1.1.0 ↗	alpha arrays › Helical domain in 5'->3' exoribonucleases › Helical domain in 5'->3' exoribonucleases › Helical domain in 5'->3' exoribonucleases	0.77	68.0	5.39e-01	100.0%	50.0%
4126373	302.1.1.1 ↗	a+b two layers › Reverse ferredoxin › Lesion bypass DNA polymerase (Y-family), little finger domain › Lesion bypass DNA polymerase (Y-family), little finger domain › IMS_C	0.51	26.0	3.31e-01	96.3%	84.4%
3307901	304.7.1.20 ↗	a+b two layers › Alpha-beta plaits › Protease propeptides/inhibitors › Protease propeptides/inhibitors › MBTP1_N	0.50	21.0	2.86e-01	98.8%	77.1%

D3 high residues 466-545

PDB

D4 medium residues 1-33_246-284

PDB

Domain cluster: representative

CATH (5)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
2ebiA01	1.10.10.60	Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like	0.60	41.0	4.27e-01	87.5%	77.3%
2gsvA00	6.10.140.40	Special › Helix non-globular › Helix Hairpins ›	0.59	38.0	3.89e-01	86.1%	70.1%
2yqzA02	1.10.8.900	Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 ›	0.52	31.0	3.19e-01	88.9%	60.3%
8b9zK01	1.10.287.3510	Mainly Alpha › Orthogonal Bundle › Helix Hairpins ›	0.52	34.0	3.24e-01	97.2%	53.8%
2zyhA01	3.40.50.1820	Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain	0.52	41.0	3.05e-01	93.1%	69.7%

ECOD (2)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3988812	614.1.1.27 ↗	alpha duplicates or obligate multimers › L27 domain › L27 domain › L27 domain › DDE_Tnp_1	0.54	32.0	3.16e-01	93.1%	52.5%
3812006	2006.1.1.0 ↗	a/b three-layered sandwiches › HAD domain-like › HAD domain-related › HAD-like	0.54	47.0	3.22e-01	100.0%	44.8%