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hypothetical_protein_MIV080R
Euk-VirInvertebrate_iridescent_virus_3
hypothetical_protein_MIV080R__YP_654652__Invertebrate_iridescent_virus_3__345201
Identity
- Accession:
- YP_654652 ↗
- Protein ID:
- hypothetical_protein_MIV080R
- Kingdom:
- euk
Quality
84.1
mean pLDDT
Taxonomy
Bamfordvirae›
Nucleocytoviricota›
Megaviricetes›
Pimascovirales›
Iridoviridae›
Chloriridovirus›
Invertebrate_iridescent_virus_3
TaxID: 345201
Cluster
View cluster (31 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 24-72_129-238
Domain cluster:
rep: decapping_enzyme__YP_005296292__Cotia_virus_SPAn232__930275__D21-62_124-184_200-215
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF00293.35 best | NUDIX | 28.1 | 2.60e-06 | 71.1% | 44.0% |
CATH (18)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4k6eA00 | 3.90.79.10 | Alpha Beta › Alpha-Beta Complex › Nucleoside Triphosphate Pyrophosphohydrolase › Nucleoside Triphosphate Pyrophosphohydrolase | 0.74 | 57.0 | 5.99e-01 | 79.2% | 91.7% |
| 2kdvA00 | 3.90.79.10 | Alpha Beta › Alpha-Beta Complex › Nucleoside Triphosphate Pyrophosphohydrolase › Nucleoside Triphosphate Pyrophosphohydrolase | 0.73 | 58.0 | 5.77e-01 | 82.4% | 89.6% |
| 3grnA00 | 3.90.79.10 | Alpha Beta › Alpha-Beta Complex › Nucleoside Triphosphate Pyrophosphohydrolase › Nucleoside Triphosphate Pyrophosphohydrolase | 0.73 | 56.0 | 6.05e-01 | 81.1% | 92.0% |
| 2o1cA00 | 3.90.79.10 | Alpha Beta › Alpha-Beta Complex › Nucleoside Triphosphate Pyrophosphohydrolase › Nucleoside Triphosphate Pyrophosphohydrolase | 0.72 | 57.0 | 5.96e-01 | 81.8% | 92.5% |
| 1ryaA00 | 3.90.79.10 | Alpha Beta › Alpha-Beta Complex › Nucleoside Triphosphate Pyrophosphohydrolase › Nucleoside Triphosphate Pyrophosphohydrolase | 0.72 | 56.0 | 5.59e-01 | 79.9% | 86.3% |
| 3hhjB00 | 3.90.79.10 | Alpha Beta › Alpha-Beta Complex › Nucleoside Triphosphate Pyrophosphohydrolase › Nucleoside Triphosphate Pyrophosphohydrolase | 0.72 | 55.0 | 6.07e-01 | 81.1% | 96.2% |
| 4kyxA00 | 3.90.79.10 | Alpha Beta › Alpha-Beta Complex › Nucleoside Triphosphate Pyrophosphohydrolase › Nucleoside Triphosphate Pyrophosphohydrolase | 0.71 | 55.0 | 5.91e-01 | 81.8% | 92.1% |
| 3edsA00 | 3.90.79.10 | Alpha Beta › Alpha-Beta Complex › Nucleoside Triphosphate Pyrophosphohydrolase › Nucleoside Triphosphate Pyrophosphohydrolase | 0.71 | 50.0 | 5.46e-01 | 80.5% | 86.5% |
| 3o8sA00 | 3.90.79.10 | Alpha Beta › Alpha-Beta Complex › Nucleoside Triphosphate Pyrophosphohydrolase › Nucleoside Triphosphate Pyrophosphohydrolase | 0.71 | 52.0 | 5.69e-01 | 81.1% | 90.3% |
| 2qjoB02 | 3.90.79.10 | Alpha Beta › Alpha-Beta Complex › Nucleoside Triphosphate Pyrophosphohydrolase › Nucleoside Triphosphate Pyrophosphohydrolase | 0.70 | 55.0 | 5.76e-01 | 81.8% | 94.5% |
| 2b0vA00 | 3.90.79.10 | Alpha Beta › Alpha-Beta Complex › Nucleoside Triphosphate Pyrophosphohydrolase › Nucleoside Triphosphate Pyrophosphohydrolase | 0.68 | 53.0 | 5.53e-01 | 81.1% | 87.8% |
| 1sjyA00 | 3.90.79.10 | Alpha Beta › Alpha-Beta Complex › Nucleoside Triphosphate Pyrophosphohydrolase › Nucleoside Triphosphate Pyrophosphohydrolase | 0.68 | 53.0 | 5.41e-01 | 81.1% | 87.7% |
| 3a6sA00 | 3.90.79.10 | Alpha Beta › Alpha-Beta Complex › Nucleoside Triphosphate Pyrophosphohydrolase › Nucleoside Triphosphate Pyrophosphohydrolase | 0.67 | 50.0 | 5.57e-01 | 81.8% | 96.8% |
| 2b06A00 | 3.90.79.10 | Alpha Beta › Alpha-Beta Complex › Nucleoside Triphosphate Pyrophosphohydrolase › Nucleoside Triphosphate Pyrophosphohydrolase | 0.66 | 52.0 | 5.33e-01 | 81.8% | 86.0% |
| 5c7qB00 | 3.90.79.10 | Alpha Beta › Alpha-Beta Complex › Nucleoside Triphosphate Pyrophosphohydrolase › Nucleoside Triphosphate Pyrophosphohydrolase | 0.65 | 51.0 | 4.94e-01 | 81.8% | 73.9% |
| 2o5fB00 | 3.90.79.10 | Alpha Beta › Alpha-Beta Complex › Nucleoside Triphosphate Pyrophosphohydrolase › Nucleoside Triphosphate Pyrophosphohydrolase | 0.65 | 53.0 | 5.35e-01 | 85.5% | 93.8% |
| 4jzsA00 | 3.90.79.10 | Alpha Beta › Alpha-Beta Complex › Nucleoside Triphosphate Pyrophosphohydrolase › Nucleoside Triphosphate Pyrophosphohydrolase | 0.65 | 56.0 | 5.63e-01 | 96.9% | 92.4% |
| 3a5zB01 | 2.30.30.30 | Mainly Beta › Roll › SH3 type barrels. › | 0.60 | 23.0 | 3.44e-01 | 100.0% | 82.5% |
ECOD (21)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2120699 | 221.4.1.1 ↗ | a+b two layers › beta-Grasp › Nudix › Nudix › NUDIX | 0.79 | 63.0 | 6.77e-01 | 82.4% | 97.1% |
| 3855125 | 221.4.1.1 ↗ | a+b two layers › beta-Grasp › Nudix › Nudix › NUDIX | 0.76 | 69.0 | 5.47e-01 | 94.3% | 86.8% |
| 5038614 | 221.4.1.1 ↗ | a+b two layers › beta-Grasp › Nudix › Nudix › NUDIX | 0.74 | 55.0 | 6.06e-01 | 82.4% | 93.1% |
| 5060978 | 221.4.1.1 ↗ | a+b two layers › beta-Grasp › Nudix › Nudix › NUDIX | 0.74 | 57.0 | 6.11e-01 | 81.1% | 90.0% |
| 3944800 | 221.4.1.1 ↗ | a+b two layers › beta-Grasp › Nudix › Nudix › NUDIX | 0.74 | 57.0 | 6.30e-01 | 81.1% | 96.9% |
| 1088358 | 221.4.1.1 ↗ | a+b two layers › beta-Grasp › Nudix › Nudix › NUDIX | 0.74 | 55.0 | 5.99e-01 | 81.8% | 91.0% |
| 4941147 | 221.4.1.1 ↗ | a+b two layers › beta-Grasp › Nudix › Nudix › NUDIX | 0.74 | 56.0 | 5.97e-01 | 81.1% | 88.6% |
| 4935762 | 221.4.1.1 ↗ | a+b two layers › beta-Grasp › Nudix › Nudix › NUDIX | 0.74 | 58.0 | 6.18e-01 | 81.1% | 92.1% |
| 4011356 | 221.4.1.0 ↗ | a+b two layers › beta-Grasp › Nudix › Nudix | 0.74 | 59.0 | 5.92e-01 | 83.0% | 83.1% |
| 3970070 | 221.4.1.0 ↗ | a+b two layers › beta-Grasp › Nudix › Nudix | 0.73 | 56.0 | 6.01e-01 | 78.6% | 90.0% |
| 4995185 | 221.4.1.1 ↗ | a+b two layers › beta-Grasp › Nudix › Nudix › NUDIX | 0.73 | 51.0 | 5.65e-01 | 81.8% | 86.9% |
| 4429837 | 221.4.1.1 ↗ | a+b two layers › beta-Grasp › Nudix › Nudix › NUDIX | 0.73 | 58.0 | 5.80e-01 | 81.8% | 88.1% |
| 5051216 | 221.4.1.1 ↗ | a+b two layers › beta-Grasp › Nudix › Nudix › NUDIX | 0.73 | 57.0 | 5.82e-01 | 80.5% | 88.4% |
| 6255 | 221.4.1.1 ↗ | a+b two layers › beta-Grasp › Nudix › Nudix › NUDIX | 0.72 | 56.0 | 5.59e-01 | 79.9% | 86.3% |
| 4031749 | 221.4.1.1 ↗ | a+b two layers › beta-Grasp › Nudix › Nudix › NUDIX | 0.72 | 55.0 | 6.15e-01 | 80.5% | 100.0% |
| 4937691 | 221.4.1.1 ↗ | a+b two layers › beta-Grasp › Nudix › Nudix › NUDIX | 0.72 | 51.0 | 5.52e-01 | 82.4% | 85.2% |
| 322067 | 221.4.1.1 ↗ | a+b two layers › beta-Grasp › Nudix › Nudix › NUDIX | 0.70 | 55.0 | 5.73e-01 | 81.8% | 89.3% |
| 3284833 | 221.4.1.1 ↗ | a+b two layers › beta-Grasp › Nudix › Nudix › NUDIX | 0.69 | 52.0 | 5.39e-01 | 81.1% | 82.7% |
| 5018740 | 221.4.1.1 ↗ | a+b two layers › beta-Grasp › Nudix › Nudix › NUDIX | 0.69 | 55.0 | 5.40e-01 | 82.4% | 91.2% |
| 5073188 | 221.4.1.1 ↗ | a+b two layers › beta-Grasp › Nudix › Nudix › NUDIX | 0.67 | 50.0 | 5.56e-01 | 79.9% | 95.4% |
| 1247709 | 221.4.1.1 ↗ | a+b two layers › beta-Grasp › Nudix › Nudix › NUDIX | 0.63 | 57.0 | 5.61e-01 | 96.2% | 94.1% |
D2
high
residues 76-112
Domain cluster:
representative
CATH (6)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1zvwA01 | 1.20.970.10 | Mainly Alpha › Up-down Bundle › Transferase, Pyrimidine Nucleoside Phosphorylase; Chain A, domain 3 › Transferase, Pyrimidine Nucleoside Phosphorylase; Chain C | 0.70 | 58.0 | 4.97e-01 | 100.0% | 71.2% |
| 3q18A02 | 1.20.1050.10 | Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › | 0.70 | 52.0 | 3.69e-01 | 83.8% | 57.8% |
| 3eabG00 | 6.10.250.440 | Special › Helix non-globular › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › | 0.65 | 48.0 | 4.70e-01 | 100.0% | 75.0% |
| 2uyyA02 | 1.10.1040.10 | Mainly Alpha › Orthogonal Bundle › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 | 0.62 | 50.0 | 3.61e-01 | 97.3% | 35.8% |
| 3g0oA02 | 1.10.1040.10 | Mainly Alpha › Orthogonal Bundle › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 | 0.62 | 49.0 | 3.58e-01 | 100.0% | 36.4% |
| 1xdxA01 | 3.30.1140.40 | Alpha Beta › 2-Layer Sandwich › Ribosomal protein S3 C-terminal domain › Tctex-1 | 0.50 | 38.0 | 2.91e-01 | 89.2% | 50.0% |
ECOD (8)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5006724 | 4163.1.1.1 ↗ | alpha bundles › GINS helical bundle-like › GINS helical bundle-like › PSF1 N-terminal domain-like › Sld5 | 0.77 | 65.0 | 4.65e-01 | 100.0% | 79.1% |
| 3540717 | 1073.1.1.0 ↗ | alpha arrays › Mitochondrial calcium uniporter (MCU) › Mitochondrial calcium uniporter (MCU) › Mitochondrial calcium uniporter (MCU) | 0.75 | 59.0 | 5.64e-01 | 91.9% | 75.6% |
| 3496361 | 3469.1.1.0 ↗ | extended segments › Ubiquitin-binding motif (UBM) › Ubiquitin-binding motif (UBM) › Ubiquitin-binding motif (UBM) | 0.74 | 63.0 | 5.78e-01 | 100.0% | 74.0% |
| 5011187 | 4163.1.1.1 ↗ | alpha bundles › GINS helical bundle-like › GINS helical bundle-like › PSF1 N-terminal domain-like › Sld5 | 0.73 | 61.0 | 4.40e-01 | 100.0% | 70.4% |
| 4997249 | 4995.1.1.1 ↗ | alpha arrays › Methionine synthase domain-like › Methionine synthase domain-like › Methionine synthase domain-like › B12-binding_2 | 0.64 | 48.0 | 3.96e-01 | 94.6% | 51.8% |
| 4937490 | 101.1.3.0 ↗ | alpha arrays › HTH › HTH › tetra-helical, LuxR-like | 0.61 | 48.0 | 4.81e-01 | 94.6% | 90.0% |
| 4932301 | 2004.1.1.30 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Helicase_C | 0.61 | 51.0 | 3.18e-01 | 100.0% | 48.9% |
| 3287235 | 7579.1.1.3 ↗ | a/b three-layered sandwiches › alpha/beta-Hydrolases › alpha/beta-Hydrolases › alpha/beta-Hydrolases › Peptidase_S9 | 0.52 | 39.0 | 2.46e-01 | 100.0% | 50.2% |