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hypothetical_protein_MIV084L
Euk-VirInvertebrate_iridescent_virus_3
hypothetical_protein_MIV084L__YP_654656__Invertebrate_iridescent_virus_3__345201
Identity
- Accession:
- YP_654656 ↗
- Protein ID:
- hypothetical_protein_MIV084L
- Kingdom:
- euk
Quality
65.0
mean pLDDT
Taxonomy
Bamfordvirae›
Nucleocytoviricota›
Megaviricetes›
Pimascovirales›
Iridoviridae›
Chloriridovirus›
Invertebrate_iridescent_virus_3
TaxID: 345201
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 6-51
Domain cluster:
representative
CATH (15)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1u7kA00 | 1.10.375.10 | Mainly Alpha › Orthogonal Bundle › Human Immunodeficiency Virus Type 1 Capsid Protein › Human Immunodeficiency Virus Type 1 Capsid Protein | 0.64 | 52.0 | 3.93e-01 | 100.0% | 67.9% |
| 7uuim02 | 1.10.1580.10 | Mainly Alpha › Orthogonal Bundle › Conserved Hypothetical Protein Ylqf; Chain: A; domain 2 › | 0.63 | 49.0 | 4.13e-01 | 97.8% | 49.4% |
| 2lfhA00 | 4.10.280.10 | Few Secondary Structures › Irregular › MYOD Basic-Helix-Loop-Helix Domain, subunit B › Helix-loop-helix DNA-binding domain | 0.63 | 48.0 | 4.30e-01 | 87.0% | 58.8% |
| 3ff5A00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.62 | 44.0 | 4.18e-01 | 89.1% | 64.8% |
| 3bkhA02 | 1.10.530.10 | Mainly Alpha › Orthogonal Bundle › Lysozyme › | 0.58 | 52.0 | 3.42e-01 | 100.0% | 33.0% |
| 2kbzA00 | 1.10.246.150 | Mainly Alpha › Orthogonal Bundle › Serum Albumin; Chain A, Domain 1 › | 0.58 | 42.0 | 3.46e-01 | 84.8% | 82.8% |
| 1z4hA01 | 1.10.238.160 | Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › | 0.57 | 43.0 | 4.11e-01 | 95.7% | 69.0% |
| 1p1tA00 | 3.30.70.330 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain | 0.57 | 47.0 | 3.74e-01 | 100.0% | 54.8% |
| 7apeB01 | 3.40.190.10 | Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II | 0.55 | 41.0 | 2.80e-01 | 82.6% | 24.9% |
| 1tizA00 | 1.10.238.10 | Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › EF-hand | 0.53 | 41.0 | 3.80e-01 | 95.7% | 97.0% |
| 4nheB01 | 3.40.50.720 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain | 0.53 | 37.0 | 2.74e-01 | 73.9% | 36.0% |
| 2fpqA00 | 3.90.1240.10 | Alpha Beta › Alpha-Beta Complex › Zincin-like › "Metalloproteases (""zincins""), catalytic domain like" | 0.53 | 44.0 | 2.60e-01 | 97.8% | 58.0% |
| 4r2fA02 | 3.40.190.10 | Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II | 0.53 | 46.0 | 3.02e-01 | 100.0% | 59.8% |
| 2z0qA01 | 1.20.900.10 | Mainly Alpha › Up-down Bundle › Dbl Homology Domain; Chain A › Dbl homology (DH) domain | 0.51 | 37.0 | 2.58e-01 | 84.8% | 44.6% |
| 3dsbA01 | 3.40.630.30 | Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) | 0.51 | 40.0 | 3.24e-01 | 93.5% | 82.2% |
ECOD (18)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3945172 | 3826.1.1.0 ↗ | alpha bundles › Copper-sensitive operon repressor (CsoR) › Copper-sensitive operon repressor (CsoR) › Copper-sensitive operon repressor (CsoR) | 0.66 | 55.0 | 3.66e-01 | 100.0% | 23.8% |
| 3635200 | 130.1.1.0 ↗ | alpha arrays › LEM/SAP HeH motif-like › LEM/SAP HeH motif › LEM/SAP HeH motif | 0.64 | 49.0 | 4.72e-01 | 100.0% | 74.5% |
| 4030882 | 159.1.2.6 ↗ | alpha bundles › all-alpha NTP pyrophosphatases › all-alpha NTP pyrophosphatases › MazG-related › PhageMin_Tail | 0.64 | 52.0 | 3.43e-01 | 95.7% | 45.2% |
| 2876157 | 101.1.9.105 ↗ | alpha arrays › HTH › HTH › Putative DNA-binding domain › PF30176 | 0.62 | 46.0 | 4.47e-01 | 89.1% | 71.7% |
| 5049549 | 275.1.1.0 ↗ | a+b two layers › MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase › MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase › MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase | 0.59 | 45.0 | 3.78e-01 | 91.3% | 47.0% |
| 4028937 | 109.4.1.1255 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Adaptin_N, Cnd1 | 0.59 | 40.0 | 2.21e-01 | 71.7% | 9.9% |
| 4951056 | 1085.1.1.1 ↗ | few secondary structure elements › Archaea X-group 1085 › Archaea H-group 1085.1 › Archaea T-group 1085.1.1 › DHH_CID | 0.57 | 46.0 | 3.97e-01 | 100.0% | 75.3% |
| 4160831 | 109.4.1.1255 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Adaptin_N, Cnd1 | 0.57 | 47.0 | 2.61e-01 | 93.5% | 19.3% |
| 4945821 | 1085.1.1.0 ↗ | few secondary structure elements › Archaea X-group 1085 › Archaea H-group 1085.1 › Archaea T-group 1085.1.1 | 0.57 | 46.0 | 3.89e-01 | 100.0% | 71.1% |
| 5026659 | 1085.1.1.1 ↗ | few secondary structure elements › Archaea X-group 1085 › Archaea H-group 1085.1 › Archaea T-group 1085.1.1 › DHH_CID | 0.57 | 45.0 | 3.84e-01 | 100.0% | 72.2% |
| 4935756 | 242.2.1.0 ↗ | a+b two layers › Homing endonucleases-like › tRNA-intron endonuclease N-terminal domain-like › tRNA-intron endonuclease N-terminal domain-like | 0.56 | 40.0 | 3.77e-01 | 73.9% | 98.2% |
| 3496772 | 109.4.1.1255 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Adaptin_N, Cnd1 | 0.54 | 36.0 | 2.04e-01 | 71.7% | 11.9% |
| 3196095 | 109.4.1.22 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Adaptin_N | 0.52 | 35.0 | 2.31e-01 | 71.7% | 31.7% |
| 2325083 | 7523.1.1.8 ↗ | a/b three-layered sandwiches › Periplasmic binding protein-like II › Periplasmic binding protein-like II › Periplasmic binding protein-like II › SBP_bac_1 | 0.52 | 38.0 | 2.78e-01 | 82.6% | 25.3% |
| 5017698 | 101.1.1.187 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › HTH_33 | 0.51 | 41.0 | 3.70e-01 | 89.1% | 72.3% |
| 1523923 | 7523.1.1.8 ↗ | a/b three-layered sandwiches › Periplasmic binding protein-like II › Periplasmic binding protein-like II › Periplasmic binding protein-like II › SBP_bac_1 | 0.51 | 37.0 | 2.60e-01 | 78.3% | 74.8% |
| 2601812 | 7523.1.1.8 ↗ | a/b three-layered sandwiches › Periplasmic binding protein-like II › Periplasmic binding protein-like II › Periplasmic binding protein-like II › SBP_bac_1 | 0.51 | 36.0 | 2.56e-01 | 80.4% | 60.9% |
| 356407 | 213.1.1.1 ↗ | a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) › Acetyltransf_1 | 0.50 | 41.0 | 2.86e-01 | 91.3% | 48.0% |
D2
high
residues 577-724
Domain cluster:
rep: putative_coat_protein__YP_009158915__Fusarium_oxysporum_f._sp._dianthi_mycovirus_1__1679238__D675-740_754-821
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF02338.26 best | OTU | 57.2 | 3.50e-15 | 83.8% | 66.4% |