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hypothetical_protein_MIV092R

Euk-Vir

Invertebrate_iridescent_virus_3

hypothetical_protein_MIV092R__YP_654664__Invertebrate_iridescent_virus_3__345201

Identity

Accession:
YP_654664 ↗
Protein ID:
hypothetical_protein_MIV092R
Kingdom:
euk

Quality

77.5 mean pLDDT

Taxonomy

Bamfordvirae› Nucleocytoviricota› Megaviricetes› Pimascovirales› Iridoviridae› Chloriridovirus› Invertebrate_iridescent_virus_3

TaxID: 345201

Cluster

Singleton — not in a non-trivial cluster

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 3-110
PDB
Domain cluster: rep: DNA-directed_RNA_polymerase_subunit_RPB5__YP_009310368__Golden_Marseillevirus__1720526__D1-112
D2 high residues 118-170
PDB
Domain cluster: rep: hypothetical_protein_KM759_gp094__YP_010087967__Lymphocystis_disease_virus_4__2704413__D104-154
CATH (32)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1dzfA02 3.90.940.20 Alpha Beta › Alpha-Beta Complex › Eukaryotic RPB6 RNA polymerase subunit › RPB5-like RNA polymerase subunit 0.89 82.0 7.26e-01 100.0% 89.0%
5yjwA00 3.50.50.100 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › 0.78 43.0 2.50e-01 100.0% 6.6%
3riqA00 2.160.20.20 Mainly Beta › 3 Solenoid › Pectate Lyase C-like › 0.74 41.0 2.32e-01 98.1% 5.4%
4hcsA00 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.72 43.0 3.96e-01 100.0% 47.8%
1rl2A01 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.65 40.0 3.96e-01 100.0% 57.1%
5cbeE00 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.64 41.0 3.83e-01 100.0% 54.7%
1kw3B01 3.10.180.10 Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1 0.63 42.0 3.18e-01 100.0% 27.3%
1icwB00 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.63 39.0 3.68e-01 100.0% 51.5%
4k6nA02 3.20.10.10 Alpha Beta › Alpha-Beta Barrel › D-amino Acid Aminotransferase; Chain A, domain 2 › D-amino Acid Aminotransferase, subunit A, domain 2 0.63 46.0 3.40e-01 81.1% 95.4%
2zyqA01 3.10.180.10 Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1 0.63 41.0 3.15e-01 100.0% 27.3%
1tg0A00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.60 37.0 3.49e-01 100.0% 50.0%
1rl1A00 2.60.40.790 Mainly Beta › Sandwich › Immunoglobulin-like › 0.59 35.0 2.94e-01 100.0% 33.7%
3oxhA02 3.10.180.10 Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1 0.59 43.0 3.41e-01 79.2% 87.7%
3lm4A01 3.10.180.10 Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1 0.58 41.0 3.12e-01 77.4% 57.4%
2dt4A00 3.30.1330.80 Alpha Beta › 2-Layer Sandwich › 60s Ribosomal Protein L30; Chain: A; › Hypothetical protein, similar to alpha- acetolactate decarboxylase; domain 2 0.57 39.0 2.84e-01 100.0% 26.6%
4it4E01 2.40.30.320 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › 0.57 48.0 3.89e-01 100.0% 84.2%
1xakA00 2.60.40.1550 Mainly Beta › Sandwich › Immunoglobulin-like › SARS coronavirus X4 0.56 40.0 3.72e-01 100.0% 60.3%
1mpyA01 3.10.180.10 Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1 0.55 40.0 3.04e-01 83.0% 56.4%
6hhuA01 2.60.40.1220 Mainly Beta › Sandwich › Immunoglobulin-like › 0.54 49.0 4.28e-01 100.0% 73.1%
3nqkA02 2.40.128.440 Mainly Beta › Beta Barrel › Lipocalin › Uncharacterised protein PF14274, DUF4361 0.54 40.0 2.84e-01 98.1% 26.2%
1egiA00 3.10.100.10 Alpha Beta › Roll › Mannose-Binding Protein A; Chain A › Mannose-Binding Protein A, subunit A 0.54 39.0 3.05e-01 81.1% 93.0%
2qqrA02 3.10.330.70 Alpha Beta › Roll › Vcp-like ATPase; Chain A, domain 2 › 0.53 35.0 3.60e-01 100.0% 69.8%
2yweA01 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.53 38.0 2.83e-01 81.1% 32.1%
4huzA01 3.10.180.10 Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1 0.52 37.0 2.82e-01 83.0% 48.2%
1zswA01 3.10.180.10 Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1 0.52 38.0 2.80e-01 84.9% 48.3%
3j7aF03 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.52 40.0 3.62e-01 100.0% 62.0%
3teeA02 2.30.30.760 Mainly Beta › Roll › SH3 type barrels. › 0.52 39.0 3.49e-01 100.0% 58.9%
6az1E03 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.51 40.0 3.56e-01 100.0% 61.1%
1okgA03 3.30.1670.10 Alpha Beta › 2-Layer Sandwich › 3-mercaptopyruvate sulfurtransferase, domain 3 › 3-mercaptopyruvate sulfurtransferase, domain 3 0.51 41.0 3.81e-01 92.5% 88.4%
3deeA02 3.90.930.50 Alpha Beta › Alpha-Beta Complex › Outer Surface Protein A; domain 3 › 0.50 37.0 2.93e-01 100.0% 36.8%
4lduA02 2.40.330.10 Mainly Beta › Beta Barrel › At1g16640 B3 domain › DNA-binding pseudobarrel domain 0.50 44.0 3.49e-01 98.1% 97.2%
6v77B02 3.90.850.10 Alpha Beta › Alpha-Beta Complex › Fumarylacetoacetate hydrolase; domain 2 › Fumarylacetoacetase-like, C-terminal domain 0.50 45.0 2.98e-01 100.0% 94.4%
ECOD (41)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3824571 840.1.1.1 ↗ a+b two layers › RPB5-like RNA polymerase subunit › RPB5-like RNA polymerase subunit › RPB5-like RNA polymerase subunit › RNA_pol_Rpb5_C 0.92 86.0 7.50e-01 100.0% 86.7%
3607644 840.1.1.1 ↗ a+b two layers › RPB5-like RNA polymerase subunit › RPB5-like RNA polymerase subunit › RPB5-like RNA polymerase subunit › RNA_pol_Rpb5_C 0.92 85.0 7.48e-01 100.0% 87.8%
3596039 840.1.1.0 ↗ a+b two layers › RPB5-like RNA polymerase subunit › RPB5-like RNA polymerase subunit › RPB5-like RNA polymerase subunit 0.92 83.0 7.48e-01 98.1% 91.4%
4838977 840.1.1.1 ↗ a+b two layers › RPB5-like RNA polymerase subunit › RPB5-like RNA polymerase subunit › RPB5-like RNA polymerase subunit › RNA_pol_Rpb5_C 0.91 84.0 7.35e-01 100.0% 85.5%
4861748 840.1.1.1 ↗ a+b two layers › RPB5-like RNA polymerase subunit › RPB5-like RNA polymerase subunit › RPB5-like RNA polymerase subunit › RNA_pol_Rpb5_C 0.90 82.0 7.38e-01 100.0% 91.5%
4600910 840.1.1.0 ↗ a+b two layers › RPB5-like RNA polymerase subunit › RPB5-like RNA polymerase subunit › RPB5-like RNA polymerase subunit 0.90 82.0 7.42e-01 100.0% 95.7%
4253107 840.1.1.1 ↗ a+b two layers › RPB5-like RNA polymerase subunit › RPB5-like RNA polymerase subunit › RPB5-like RNA polymerase subunit › RNA_pol_Rpb5_C 0.89 82.0 7.26e-01 100.0% 89.0%
3033324 840.1.1.1 ↗ a+b two layers › RPB5-like RNA polymerase subunit › RPB5-like RNA polymerase subunit › RPB5-like RNA polymerase subunit › RNA_pol_Rpb5_C 0.83 73.0 6.66e-01 100.0% 90.3%
4341478 2.1.1.2 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Ribosomal_L2 0.72 43.0 3.66e-01 100.0% 37.6%
4399169 2.1.1.2 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Ribosomal_L2 0.69 41.0 4.01e-01 100.0% 53.3%
4675859 211.1.1.0 ↗ a+b two layers › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase 0.67 44.0 3.31e-01 100.0% 27.7%
None — 0.67 44.0 3.29e-01 100.0% 26.7%
4149036 211.1.1.19 ↗ a+b two layers › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › BphC_D1 0.66 43.0 3.25e-01 100.0% 26.7%
4982935 1.1.2.0 ↗ beta barrels › cradle loop barrel › RIFT-related › double psi 0.64 56.0 4.43e-01 100.0% 71.7%
5082629 1.1.2.16 ↗ beta barrels › cradle loop barrel › RIFT-related › double psi › MacB_PCD 0.62 54.0 4.08e-01 100.0% 63.1%
3489512 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.62 40.0 3.91e-01 100.0% 60.0%
4054514 3398.1.1.1 ↗ a/b three-layered sandwiches › STING C-terminal domain › STING C-terminal domain › STING C-terminal domain › TMEM173 0.62 44.0 2.99e-01 75.5% 42.6%
4015706 221.7.1.0 ↗ a+b two layers › beta-Grasp › E2-binding domain of E1 › E2-binding domain of E1 0.61 45.0 3.78e-01 81.1% 89.5%
4621658 241.4.1.0 ↗ a+b two layers › Type III secretory system chaperone-like › Hypothetical protein c14orf129, hspc210 › Hypothetical protein c14orf129, hspc210 0.61 43.0 3.08e-01 100.0% 27.6%
4024963 2004.1.1.14 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › GTP_EFTU 0.61 43.0 2.99e-01 77.4% 26.8%
3238003 241.4.1.1 ↗ a+b two layers › Type III secretory system chaperone-like › Hypothetical protein c14orf129, hspc210 › Hypothetical protein c14orf129, hspc210 › GSKIP_dom 0.60 43.0 3.15e-01 100.0% 29.6%
3740110 241.4.1.0 ↗ a+b two layers › Type III secretory system chaperone-like › Hypothetical protein c14orf129, hspc210 › Hypothetical protein c14orf129, hspc210 0.60 43.0 3.20e-01 100.0% 32.0%
3386884 1.1.2.0 ↗ beta barrels › cradle loop barrel › RIFT-related › double psi 0.60 54.0 4.11e-01 100.0% 72.5%
3775139 241.4.1.0 ↗ a+b two layers › Type III secretory system chaperone-like › Hypothetical protein c14orf129, hspc210 › Hypothetical protein c14orf129, hspc210 0.59 42.0 3.20e-01 100.0% 33.3%
3361876 241.4.1.1 ↗ a+b two layers › Type III secretory system chaperone-like › Hypothetical protein c14orf129, hspc210 › Hypothetical protein c14orf129, hspc210 › GSKIP_dom 0.59 42.0 3.14e-01 100.0% 32.0%
3520019 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.59 40.0 3.90e-01 100.0% 63.3%
4403811 241.4.1.0 ↗ a+b two layers › Type III secretory system chaperone-like › Hypothetical protein c14orf129, hspc210 › Hypothetical protein c14orf129, hspc210 0.58 42.0 3.15e-01 100.0% 33.3%
3282127 211.1.1.0 ↗ a+b two layers › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase 0.58 41.0 3.25e-01 77.4% 65.8%
3397690 395.1.1.3 ↗ few secondary structure elements › Midkine-related › Midkine-related › Midkine-related › JTB 0.57 44.0 4.28e-01 100.0% 75.0%
3998546 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.57 39.0 3.80e-01 100.0% 65.0%
4988096 1.1.13.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins 0.57 50.0 3.90e-01 100.0% 76.3%
4988786 1.1.2.16 ↗ beta barrels › cradle loop barrel › RIFT-related › double psi › MacB_PCD 0.55 47.0 3.84e-01 100.0% 63.8%
3907295 220.1.1.1 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.55 40.0 3.08e-01 100.0% 33.6%
6497 284.1.1.6 ↗ a+b two layers › FKBP-like › FKBP-like › FKBP-like › DUF1930 0.54 45.0 4.16e-01 98.1% 88.9%
3821958 387.1.5.19 ↗ few secondary structure elements › omega toxin-like › omega toxin-related › Scorpion toxin-like › Defensin 0.54 33.0 3.48e-01 88.7% 71.1%
3599038 284.1.1.0 ↗ a+b two layers › FKBP-like › FKBP-like › FKBP-like 0.53 46.0 4.22e-01 100.0% 92.9%
3507872 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.53 44.0 3.72e-01 100.0% 55.6%
3277466 220.1.1.305 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PF26662 0.53 47.0 3.50e-01 100.0% 42.3%
4037779 241.4.1.0 ↗ a+b two layers › Type III secretory system chaperone-like › Hypothetical protein c14orf129, hspc210 › Hypothetical protein c14orf129, hspc210 0.53 36.0 3.00e-01 100.0% 39.0%
3792647 7525.1.1.1 ↗ a/b three-layered sandwiches › Phosphoglycerate mutase-like › Phosphoglycerate mutase-like › Phosphoglycerate mutase-like › His_Phos_1 0.51 36.0 2.37e-01 77.4% 65.6%
3927505 304.3.1.0 ↗ a+b two layers › Alpha-beta plaits › HMA-related › HMA, heavy metal-associated domain 0.51 43.0 3.74e-01 94.3% 98.8%