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hypothetical_protein_MIV093L

Euk-Vir

Invertebrate_iridescent_virus_3

hypothetical_protein_MIV093L__YP_654665__Invertebrate_iridescent_virus_3__345201

Identity

Accession:
YP_654665 ↗
Protein ID:
hypothetical_protein_MIV093L
Kingdom:
euk

Quality

78.2 mean pLDDT

Taxonomy

Bamfordvirae› Nucleocytoviricota› Megaviricetes› Pimascovirales› Iridoviridae› Chloriridovirus› Invertebrate_iridescent_virus_3

TaxID: 345201

Cluster

View cluster (5 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 6-87
PDB
Domain cluster: rep: NC_031927.1__YP_009323018.1__BOW86_gp085__00085__D3-79
CATH (38)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1ln0A00 3.40.1440.10 Alpha Beta › 3-Layer(aba) Sandwich › GIY-YIG endonuclease › GIY-YIG endonuclease 0.83 74.0 7.12e-01 98.8% 85.9%
1f6fB02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.72 45.0 4.25e-01 92.7% 52.6%
3lb6C01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.71 42.0 4.09e-01 82.9% 53.4%
3lqmA02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.70 43.0 4.04e-01 92.7% 50.0%
5e55B02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.68 44.0 4.24e-01 92.7% 58.1%
3h20A01 3.30.1490.240 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › RepB DNA-primase, N-terminal domain 0.68 42.0 4.67e-01 81.7% 78.8%
4yrdA02 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.67 38.0 3.35e-01 81.7% 37.8%
5e53A02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.67 43.0 4.20e-01 92.7% 58.1%
2jxtA01 3.10.20.10 Alpha Beta › Roll › Ubiquitin-like (UB roll) › 0.67 49.0 5.12e-01 91.5% 85.5%
4pofA03 2.20.28.10 Mainly Beta › Single Sheet › Rubrerythrin, domain 2 › 0.67 41.0 5.01e-01 78.0% 100.0%
4lsdF00 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.67 42.0 3.99e-01 92.7% 53.1%
4gs7C02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.67 44.0 4.15e-01 92.7% 56.1%
2eddA01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.66 41.0 3.70e-01 92.7% 45.5%
1ltlA03 2.20.28.10 Mainly Beta › Single Sheet › Rubrerythrin, domain 2 › 0.65 39.0 4.65e-01 78.0% 100.0%
1vwxS02 3.10.20.10 Alpha Beta › Roll › Ubiquitin-like (UB roll) › 0.63 47.0 4.83e-01 93.9% 85.5%
2zl7A02 2.40.30.120 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Positive stranded ssRNA viruses 0.63 40.0 3.92e-01 79.3% 58.2%
2qsdA01 3.10.20.10 Alpha Beta › Roll › Ubiquitin-like (UB roll) › 0.63 41.0 4.50e-01 78.0% 82.1%
2pn5A03 2.60.40.1940 Mainly Beta › Sandwich › Immunoglobulin-like › 0.61 40.0 3.72e-01 82.9% 52.4%
1unnC00 3.30.1490.100 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › DNA polymerase, Y-family, little finger domain 0.61 42.0 3.81e-01 81.7% 53.2%
1qysA00 3.30.1710.10 Alpha Beta › 2-Layer Sandwich › top7, de novo designed protein › top7, de novo designed protein 0.60 38.0 3.73e-01 75.6% 57.6%
3hvnA01 3.90.840.10 Alpha Beta › Alpha-Beta Complex › HIV-1 Reverse Transcriptase; Chain A, domain 3 › Thiol-activated cytolysin superfamily/Thiol-activated cytolysin, alpha-beta domain 0.59 46.0 3.60e-01 82.9% 40.7%
2v5yA04 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.59 38.0 3.59e-01 80.5% 52.9%
3hrzC01 2.20.210.20 Mainly Beta › Single Sheet › ubp-family deubiquitinating enzyme fold › 0.59 35.0 4.21e-01 80.5% 98.0%
2hj1A00 3.10.20.280 Alpha Beta › Roll › Ubiquitin-like (UB roll) › RnfH-like 0.58 39.0 4.01e-01 75.6% 72.7%
1ca1A02 2.60.60.20 Mainly Beta › Sandwich › Lipoxygenase-1 › PLAT/LH2 domain 0.58 40.0 3.58e-01 81.7% 50.0%
5kycB02 2.20.210.10 Mainly Beta › Single Sheet › ubp-family deubiquitinating enzyme fold › ubp-family deubiquitinating enzyme superfamily 0.56 36.0 4.19e-01 79.3% 100.0%
4kyzA00 3.30.70.600 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Ribosomal protein S10 0.56 36.0 2.90e-01 79.3% 31.7%
3r5lA00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.55 44.0 3.91e-01 86.6% 81.9%
4ca1B02 2.60.210.10 Mainly Beta › Sandwich › Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A › Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A 0.54 40.0 3.42e-01 78.0% 50.8%
7ylrA01 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.54 39.0 3.61e-01 76.8% 69.5%
1w99A02 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.53 40.0 3.06e-01 79.3% 38.2%
3rjaA02 3.40.462.20 Alpha Beta › 3-Layer(aba) Sandwich › Vanillyl-alcohol Oxidase; Chain A, domain 3 › 0.52 44.0 3.29e-01 97.6% 64.2%
3o2iA00 3.30.70.2710 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.51 41.0 3.97e-01 98.8% 76.3%
5y6qB02 3.30.390.50 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › CO dehydrogenase flavoprotein, C-terminal domain 0.51 37.0 3.48e-01 78.0% 69.8%
2jvfA00 3.30.1710.10 Alpha Beta › 2-Layer Sandwich › top7, de novo designed protein › top7, de novo designed protein 0.51 33.0 3.23e-01 79.3% 57.4%
2xskA00 2.60.40.2420 Mainly Beta › Sandwich › Immunoglobulin-like › 0.51 36.0 3.43e-01 80.5% 63.2%
7vxrA01 3.40.800.10 Alpha Beta › 3-Layer(aba) Sandwich › Arginase; Chain A › Ureohydrolase domain 0.50 42.0 3.99e-01 92.7% 92.9%
2z5bB01 3.30.230.90 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S5; domain 2 › 0.50 36.0 3.22e-01 74.4% 98.3%
ECOD (49)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4344289 821.1.1.1 ↗ a+b three layers › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG 0.79 71.0 6.09e-01 100.0% 64.6%
3963488 821.1.1.7 ↗ a+b three layers › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG endonuclease › LEM-3_GIY-YIG 0.77 71.0 6.32e-01 100.0% 73.0%
5053865 821.1.1.0 ↗ a+b three layers › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG endonuclease 0.77 63.0 6.17e-01 98.8% 81.1%
3182286 821.1.1.0 ↗ a+b three layers › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG endonuclease 0.74 68.0 5.15e-01 100.0% 67.0%
3783477 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.74 47.0 4.23e-01 82.9% 48.2%
4026479 821.1.1.1 ↗ a+b three layers › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG 0.68 61.0 5.24e-01 100.0% 66.2%
3231574 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.67 40.0 3.79e-01 81.7% 49.0%
4969863 3115.1.1.1 ↗ a+b two layers › GP2-like › RplX-like › RplX-like › Ribosomal_L18A 0.66 49.0 5.10e-01 95.1% 88.0%
4967222 3115.1.1.1 ↗ a+b two layers › GP2-like › RplX-like › RplX-like › Ribosomal_L18A 0.65 46.0 5.12e-01 81.7% 100.0%
5074648 3115.1.1.0 ↗ a+b two layers › GP2-like › RplX-like › RplX-like 0.65 49.0 5.04e-01 92.7% 88.0%
4996552 3115.1.1.1 ↗ a+b two layers › GP2-like › RplX-like › RplX-like › Ribosomal_L18A 0.65 49.0 4.85e-01 95.1% 77.6%
3345090 3115.1.1.1 ↗ a+b two layers › GP2-like › RplX-like › RplX-like › Ribosomal_L18A 0.65 48.0 4.43e-01 91.5% 60.2%
5014684 3115.1.1.0 ↗ a+b two layers › GP2-like › RplX-like › RplX-like 0.65 44.0 4.97e-01 82.9% 100.0%
5067865 3115.1.1.0 ↗ a+b two layers › GP2-like › RplX-like › RplX-like 0.65 48.0 5.07e-01 93.9% 92.9%
3994984 3115.1.1.0 ↗ a+b two layers › GP2-like › RplX-like › RplX-like 0.65 47.0 5.18e-01 80.5% 96.9%
4160542 3115.1.1.1 ↗ a+b two layers › GP2-like › RplX-like › RplX-like › Ribosomal_L18A 0.64 44.0 4.98e-01 79.3% 100.0%
5015713 3115.1.1.0 ↗ a+b two layers › GP2-like › RplX-like › RplX-like 0.63 44.0 5.04e-01 76.8% 100.0%
4013514 3115.1.1.0 ↗ a+b two layers › GP2-like › RplX-like › RplX-like 0.63 47.0 4.43e-01 95.1% 63.8%
5012895 3115.1.1.0 ↗ a+b two layers › GP2-like › RplX-like › RplX-like 0.63 41.0 4.70e-01 80.5% 100.0%
2106285 3115.1.1.1 ↗ a+b two layers › GP2-like › RplX-like › RplX-like › Ribosomal_L18A 0.63 46.0 4.29e-01 95.1% 61.1%
4968352 302.4.1.0 ↗ a+b two layers › Reverse ferredoxin › a+b domain in Acetophenone carboxylase (Apc) alpha subunit › a+b domain in Acetophenone carboxylase (Apc) alpha subunit 0.62 43.0 4.33e-01 84.1% 70.6%
5068178 302.4.1.0 ↗ a+b two layers › Reverse ferredoxin › a+b domain in Acetophenone carboxylase (Apc) alpha subunit › a+b domain in Acetophenone carboxylase (Apc) alpha subunit 0.62 48.0 4.58e-01 84.1% 72.6%
4951473 3115.1.1.1 ↗ a+b two layers › GP2-like › RplX-like › RplX-like › Ribosomal_L18A 0.61 43.0 4.73e-01 82.9% 98.4%
4937773 3115.1.1.1 ↗ a+b two layers › GP2-like › RplX-like › RplX-like › Ribosomal_L18A 0.61 41.0 4.65e-01 79.3% 100.0%
5049794 301.1.1.2 ↗ a+b three layers › Bacillus chorismate mutase-like › L30e-like › L30e-like › eRF1_3 0.60 49.0 4.05e-01 87.8% 61.4%
3603767 302.4.1.0 ↗ a+b two layers › Reverse ferredoxin › a+b domain in Acetophenone carboxylase (Apc) alpha subunit › a+b domain in Acetophenone carboxylase (Apc) alpha subunit 0.60 42.0 3.97e-01 84.1% 58.1%
2006900 302.4.1.0 ↗ a+b two layers › Reverse ferredoxin › a+b domain in Acetophenone carboxylase (Apc) alpha subunit › a+b domain in Acetophenone carboxylase (Apc) alpha subunit 0.60 39.0 3.70e-01 80.5% 52.9%
4151900 301.1.1.2 ↗ a+b three layers › Bacillus chorismate mutase-like › L30e-like › L30e-like › eRF1_3 0.60 49.0 4.03e-01 87.8% 61.8%
4979507 301.1.1.2 ↗ a+b three layers › Bacillus chorismate mutase-like › L30e-like › L30e-like › eRF1_3 0.59 48.0 3.93e-01 89.0% 60.4%
4448678 4.1.1.307 ↗ beta barrels › SH3 › SH3 › SH3 › PF26132 0.57 41.0 4.24e-01 76.8% 100.0%
3510040 3115.3.1.2 ↗ a+b two layers › GP2-like › P56 › P56 › DUF2922 0.57 41.0 4.18e-01 80.5% 78.8%
2806820 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.57 36.0 3.45e-01 80.5% 53.0%
146929 3115.3.1.1 ↗ a+b two layers › GP2-like › P56 › P56 › UDG-inhib_P56 0.57 35.0 3.89e-01 80.5% 87.5%
3979798 3115.1.1.0 ↗ a+b two layers › GP2-like › RplX-like › RplX-like 0.56 49.0 4.52e-01 98.8% 76.4%
4927132 815.1.1.0 ↗ a+b two layers › Chromosomal protein MC1 › Chromosomal protein MC1 › Chromosomal protein MC1 0.56 40.0 3.88e-01 79.3% 65.3%
3242230 2484.1.1.0 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.56 44.0 3.25e-01 87.8% 32.1%
4847420 5089.1.1.1 ↗ beta complex topology › Membrane attack complex/perforin (MACPF) and cholesterol-dependent cytolysin (CDC) domains › Membrane attack complex/perforin (MACPF) and cholesterol-dependent cytolysin (CDC) domains › Membrane attack complex/perforin (MACPF) and cholesterol-dependent cytolysin (CDC) domains › Thiol_cytolysin 0.56 43.0 3.03e-01 81.7% 45.3%
3965010 3115.4.1.1 ↗ a+b two layers › GP2-like › Uncharacterized conserved protein Il1583 › Uncharacterized conserved protein Il1583 › DUF1543 0.56 46.0 4.53e-01 92.7% 87.8%
3402906 10.32.1.0 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like 0.55 38.0 3.15e-01 72.0% 70.0%
3905094 302.1.1.1 ↗ a+b two layers › Reverse ferredoxin › Lesion bypass DNA polymerase (Y-family), little finger domain › Lesion bypass DNA polymerase (Y-family), little finger domain › IMS_C 0.55 42.0 3.61e-01 82.9% 54.8%
3285401 3986.2.1.0 ↗ a+b two layers › GTP-binding protein lepA C-terminal domain-like › Antitoxin Dmd › Antitoxin Dmd 0.54 34.0 3.57e-01 80.5% 69.3%
4927303 525.1.1.1 ↗ a+b two layers › Urease, gamma-subunit › Urease, gamma-subunit › Urease, gamma-subunit › Urease_gamma 0.52 39.0 3.46e-01 80.5% 88.3%
3760983 3335.1.1.3 ↗ beta barrels › Handle domain in transferrin-binding protein B › Handle domain in transferrin-binding protein B › Handle domain in transferrin-binding protein B › KCTD18_C 0.52 38.0 3.56e-01 76.8% 100.0%
4883192 3019.1.1.1 ↗ beta sandwiches › gp11/flagellar cap protein FliD insertion domain › gp11/flagellar cap protein FliD insertion domain › gp11/flagellar cap protein FliD insertion domain › Flagellin_IN 0.52 37.0 3.33e-01 78.0% 62.3%
4345353 322.1.1.2 ↗ a+b two layers › HPr-like › HPr-like › HPr-like › 3H 0.51 37.0 3.36e-01 78.0% 53.3%
3928420 3680.1.1.0 ↗ a+b complex topology › Zinc finger FYVE domain-containing protein 9 C-terminal domain › Zinc finger FYVE domain-containing protein 9 C-terminal domain › Zinc finger FYVE domain-containing protein 9 C-terminal domain 0.51 38.0 3.18e-01 80.5% 78.7%
3766042 221.1.1.76 ↗ a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › RA_2 0.51 37.0 3.36e-01 75.6% 66.4%
3941016 221.1.1.0 ↗ a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like 0.51 37.0 3.23e-01 78.0% 63.7%
2132899 2492.1.1.20 ↗ a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like › APOBEC3 0.51 44.0 3.44e-01 97.6% 67.8%
D2 high residues 119-264
PDB
Domain cluster: rep: N1R_p28-like_protein__YP_008004623__Choristoneura_rosaceana_entomopoxvirus_L__1293539__D80-201
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF10553.15 best MSV199 54.0 3.10e-14 93.2% 75.0%
CATH (4)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3elkA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.57 32.0 3.71e-01 76.0% 74.3%
2jtvA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.54 24.0 3.22e-01 74.7% 83.1%
6wimA02 3.10.20.310 Alpha Beta › Roll › Ubiquitin-like (UB roll) › membrane protein fhac 0.52 24.0 3.16e-01 71.9% 81.1%
2q04F00 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.50 36.0 3.23e-01 73.3% 80.8%
ECOD (12)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3978692 101.1.9.143 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain › Virulence_RhuM 0.68 47.0 4.70e-01 81.5% 68.0%
3474923 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.61 28.0 3.50e-01 89.7% 68.9%
5010381 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.60 30.0 3.44e-01 76.0% 60.9%
5075915 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.57 29.0 3.59e-01 72.6% 78.8%
3342515 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.57 34.0 3.75e-01 76.7% 73.9%
4936304 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.56 30.0 3.68e-01 76.7% 84.7%
3355197 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.55 33.0 3.87e-01 76.0% 85.0%
5022297 242.1.1.7 ↗ a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases › LAGLIDADG_3 0.55 28.0 3.40e-01 74.0% 72.6%
3600665 108.1.1.0 ↗ alpha arrays › EF-hand › EF-hand-related › EF-hand 0.55 36.0 4.02e-01 82.9% 86.4%
4988334 101.1.2.913 ↗ alpha arrays › HTH › HTH › winged helix domain › WH_Lhr 0.54 28.0 3.43e-01 74.7% 77.8%
1159602 242.1.1.7 ↗ a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases › LAGLIDADG_3 0.52 28.0 3.11e-01 76.0% 66.1%
5045022 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.51 28.0 3.07e-01 71.9% 63.3%