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hypothetical_protein_MPVG_00102

Euk-Vir

Micromonas_pusilla_virus_12T

hypothetical_protein_MPVG_00102__YP_007676169__Micromonas_pusilla_virus_12T__755272

Identity

Accession:
YP_007676169 ↗
Protein ID:
hypothetical_protein_MPVG_00102
Kingdom:
euk

Quality

78.2 mean pLDDT

Taxonomy

Bamfordvirae› Nucleocytoviricota› Megaviricetes› Algavirales› Phycodnaviridae› Prasinovirus› Micromonas_pusilla_virus_12T

TaxID: 755272

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 7-77
PDB
Domain cluster: representative
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF19060.6 best DVNP 84.9 5.90e-24 100.0% 89.9%
CATH (10)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1mkmB01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.57 29.0 2.91e-01 70.4% 46.1%
2dloA00 2.10.110.10 Mainly Beta › Ribbon › Cysteine Rich Protein › Cysteine Rich Protein 0.56 38.0 3.71e-01 70.4% 77.8%
3r4iA02 6.10.140.960 Special › Helix non-globular › Helix Hairpins › 0.56 29.0 3.11e-01 74.6% 55.0%
3wnkA02 3.20.20.80 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycosidases 0.56 39.0 2.51e-01 71.8% 60.8%
4yapA01 3.40.30.10 Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin 0.54 33.0 2.77e-01 95.8% 32.5%
4wz2C00 3.30.40.10 Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) 0.53 33.0 3.34e-01 70.4% 62.2%
2csyA01 3.30.40.10 Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) 0.52 32.0 3.51e-01 71.8% 75.0%
3r2qA01 3.40.30.10 Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin 0.52 30.0 2.85e-01 97.2% 43.8%
3p3vA00 3.40.35.10 Alpha Beta › 3-Layer(aba) Sandwich › Fructose Permease › Phosphotransferase system, sorbose subfamily IIB component 0.51 31.0 2.45e-01 88.7% 27.3%
1pmtA01 3.40.30.10 Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin 0.50 31.0 2.92e-01 95.8% 46.8%
ECOD (39)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3718286 376.1.1.8 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › U-box 0.74 42.0 4.26e-01 70.4% 57.1%
4180025 376.1.1.21 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-RING_2 0.69 48.0 4.08e-01 70.4% 59.1%
None — 0.67 40.0 3.98e-01 70.4% 57.3%
3395505 376.1.1.21 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-RING_2 0.66 37.0 4.52e-01 70.4% 86.7%
4853380 376.1.1.35 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-RING_14 0.62 45.0 4.26e-01 95.8% 64.7%
3897137 376.1.1.20 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-RING_UBOX 0.62 37.0 4.14e-01 70.4% 78.2%
3683169 376.1.1.1 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-C3HC4 0.62 54.0 4.75e-01 94.4% 87.0%
3567222 376.1.1.8 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › U-box 0.61 42.0 3.98e-01 71.8% 60.0%
4488994 376.1.1.1 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-C3HC4 0.60 42.0 4.42e-01 94.4% 80.0%
3666975 376.1.1.20 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-RING_UBOX 0.60 49.0 4.55e-01 85.9% 90.6%
4029669 376.1.1.1 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-C3HC4 0.60 38.0 4.20e-01 70.4% 83.6%
3840946 376.1.1.20 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-RING_UBOX 0.59 37.0 3.57e-01 70.4% 52.5%
3342185 376.1.1.1 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-C3HC4 0.59 50.0 4.48e-01 90.1% 84.2%
3749618 376.1.1.29 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-C3HC4_4 0.59 42.0 3.75e-01 100.0% 53.0%
3671742 376.1.1.8 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › U-box 0.59 38.0 4.35e-01 95.8% 87.3%
3294924 376.1.1.8 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › U-box 0.58 41.0 3.69e-01 73.2% 56.8%
3808059 376.1.1.1 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-C3HC4 0.58 49.0 4.40e-01 90.1% 90.5%
None — 0.58 41.0 3.76e-01 73.2% 58.9%
3886764 376.1.1.0 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box 0.57 40.0 3.88e-01 73.2% 93.8%
3263160 376.1.1.21 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-RING_2 0.57 50.0 4.32e-01 94.4% 81.9%
3249848 376.1.1.21 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-RING_2 0.57 49.0 4.57e-01 91.5% 95.3%
3430765 376.1.1.20 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-RING_UBOX 0.56 50.0 4.44e-01 98.6% 87.0%
3480324 3930.2.1.1 ↗ alpha bundles › Helical bundle insertion in helicase domains › Helical bundle in endoribonuclease Dicer › Helical bundle in endoribonuclease Dicer › Dicer_PBD 0.55 36.0 2.80e-01 73.2% 32.4%
3237486 376.1.1.20 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-RING_UBOX 0.55 43.0 4.53e-01 98.6% 90.8%
3431026 376.1.1.23 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-C3HC4_2 0.54 49.0 4.42e-01 98.6% 92.6%
4018018 376.1.1.21 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-RING_2 0.54 48.0 4.29e-01 100.0% 72.8%
3702126 376.1.1.27 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-RING_5 0.54 49.0 4.65e-01 98.6% 98.8%
3929205 376.1.1.22 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-C3HC4_3 0.53 36.0 3.48e-01 71.8% 62.5%
3793771 376.1.1.15 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-Nse 0.52 41.0 3.76e-01 95.8% 65.9%
3935843 376.1.1.27 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-RING_5 0.52 40.0 3.93e-01 100.0% 77.3%
4012820 376.1.1.0 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box 0.52 36.0 2.75e-01 94.4% 29.1%
4027964 7579.1.1.42 ↗ a/b three-layered sandwiches › alpha/beta-Hydrolases › alpha/beta-Hydrolases › alpha/beta-Hydrolases › Hydrolase_4 0.52 42.0 2.78e-01 93.0% 92.4%
3241153 376.1.1.0 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box 0.52 46.0 3.56e-01 100.0% 50.6%
3204711 376.1.1.1 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-C3HC4 0.52 34.0 2.92e-01 70.4% 39.2%
4332197 376.1.1.1 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-C3HC4 0.52 35.0 3.30e-01 70.4% 53.3%
3816782 376.1.1.1 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-C3HC4 0.51 48.0 4.73e-01 100.0% 100.0%
3185618 2003.1.2.18 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain 0.51 43.0 2.71e-01 95.8% 61.4%
3368659 376.1.1.27 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-RING_5 0.50 47.0 4.49e-01 100.0% 96.2%
3392056 376.1.1.23 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-C3HC4_2 0.50 45.0 4.29e-01 100.0% 91.8%